Wall clock time and date at job start Tue Mar 31 2020 14:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48503 * 109.47093 * 269.99971 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.47082 * 149.99958 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00181 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99864 * 179.97438 * 10 9 7 12 12 O 1.21593 * 120.00321 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99684 * 180.02562 * 11 10 9 14 14 C 1.40192 * 119.99862 * 185.32049 * 13 11 10 15 15 C 1.38840 * 119.99004 * 213.53424 * 14 13 11 16 16 C 1.38118 * 120.04137 * 180.25002 * 15 14 13 17 17 C 1.38798 * 120.01726 * 359.50021 * 16 15 14 18 18 N 1.40087 * 120.00958 * 180.27309 * 17 16 15 19 19 C 1.47013 * 111.00166 * 63.63116 * 18 17 16 20 20 C 1.53098 * 109.26024 * 177.60763 * 19 18 17 21 21 O 1.43013 * 109.25928 * 56.84968 * 20 19 18 22 22 C 1.43016 * 113.73623 * 301.33058 * 21 20 19 23 23 C 1.47017 * 111.00050 * 299.99768 * 18 17 16 24 24 C 1.39050 * 119.98079 * 0.24688 * 17 16 15 25 25 F 1.35100 * 120.02541 * 180.02562 * 24 17 16 26 26 C 1.38246 * 119.95636 * 0.02562 * 24 17 16 27 27 H 0.97011 * 119.99898 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46965 * 60.00453 * 9 7 2 29 29 H 1.09002 * 109.47387 * 300.00217 * 9 7 2 30 30 H 0.97003 * 119.99613 * 0.02562 * 10 9 7 31 31 H 0.97002 * 120.00640 * 5.32033 * 13 11 10 32 32 H 1.07996 * 119.97867 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.98949 * 179.76552 * 16 15 14 34 34 H 1.08998 * 109.50917 * 297.54816 * 19 18 17 35 35 H 1.09009 * 109.50673 * 57.67162 * 19 18 17 36 36 H 1.09000 * 109.50581 * 296.91313 * 20 19 18 37 37 H 1.09002 * 109.50846 * 176.78995 * 20 19 18 38 38 H 1.09001 * 109.50826 * 298.73151 * 22 21 20 39 39 H 1.08996 * 109.54396 * 178.62464 * 22 21 20 40 40 H 1.09001 * 109.50416 * 302.32793 * 23 18 17 41 41 H 1.08999 * 109.50553 * 62.45825 * 23 18 17 42 42 H 1.08006 * 120.00794 * 179.97438 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7535 -4.8833 -0.0015 12 8 0.5580 -5.1055 -0.0006 13 7 2.6293 -5.9078 -0.0021 14 6 2.1659 -7.2261 -0.1144 15 6 2.8335 -8.2543 0.5374 16 6 2.3808 -9.5542 0.4233 17 6 1.2519 -9.8323 -0.3347 18 7 0.7896 -11.1500 -0.4456 19 6 0.3652 -11.6713 0.8618 20 6 -0.1869 -13.0884 0.6855 21 8 0.8103 -13.9103 0.0728 22 6 1.2462 -13.4322 -1.2027 23 6 1.8129 -12.0186 -1.0455 24 6 0.5795 -8.8025 -0.9835 25 9 -0.5198 -9.0721 -1.7211 26 6 1.0367 -7.5025 -0.8733 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8897 30 1 3.1565 -3.4354 -0.0021 31 1 3.5803 -5.7330 0.0751 32 1 3.7094 -8.0380 1.1309 33 1 2.9031 -10.3539 0.9275 34 1 1.2191 -11.6950 1.5389 35 1 -0.4107 -11.0273 1.2760 36 1 -1.0730 -13.0575 0.0515 37 1 -0.4499 -13.5004 1.6597 38 1 0.4018 -13.4113 -1.8916 39 1 2.0195 -14.0927 -1.5948 40 1 2.0938 -11.6282 -2.0236 41 1 2.6899 -12.0479 -0.3989 42 1 0.5153 -6.7020 -1.3772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785772070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:30 Heat of formation + Delta-G solvation = -101.997066 kcal Electronic energy + Delta-G solvation = -26594.741263 eV Core-core repulsion = 22488.630440 eV Total energy + Delta-G solvation = -4106.110823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85590 -41.77943 -40.97935 -39.38462 -37.14021 -36.15519 -35.13535 -34.26884 -32.18215 -31.69533 -30.62008 -29.12902 -27.14268 -25.01134 -24.99270 -24.25827 -23.02266 -22.10426 -21.27462 -20.00192 -19.32102 -18.40443 -18.11067 -17.42450 -17.19152 -17.07688 -16.66362 -16.54791 -16.39783 -16.21418 -15.92837 -15.91355 -15.65660 -15.24377 -15.01002 -14.86396 -14.38225 -14.08323 -14.00548 -13.62155 -13.42784 -13.24779 -12.91670 -12.82321 -12.73003 -12.55404 -12.35738 -12.22871 -11.60314 -11.49442 -11.42794 -11.21844 -10.82298 -10.74779 -9.98201 -9.88242 -9.61679 -9.10004 -8.29703 -6.46310 -0.03139 0.12394 1.43146 1.46257 1.55612 1.61628 1.97957 2.37919 2.51742 2.54810 2.93118 3.05794 3.14913 3.42859 3.72221 3.89065 3.93606 4.06510 4.13811 4.14840 4.22898 4.25336 4.46366 4.54015 4.60903 4.71090 4.79237 4.85949 4.94251 4.95953 5.00765 5.13894 5.18105 5.23362 5.31416 5.43169 5.59800 5.68659 5.77590 5.80944 6.11612 6.14527 6.19347 6.64618 7.11817 7.23883 7.53522 8.82431 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.039522 B = 0.002127 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.292596 B =13161.439740 C =13447.520305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.284 3.716 10 N -0.712 5.712 11 C 0.690 3.310 12 O -0.626 6.626 13 N -0.670 5.670 14 C 0.194 3.806 15 C -0.131 4.131 16 C -0.085 4.085 17 C 0.029 3.971 18 N -0.511 5.511 19 C 0.022 3.978 20 C 0.065 3.935 21 O -0.398 6.398 22 C 0.063 3.937 23 C 0.023 3.977 24 C 0.125 3.875 25 F -0.142 7.142 26 C -0.178 4.178 27 H 0.269 0.731 28 H -0.012 1.012 29 H -0.011 1.011 30 H 0.409 0.591 31 H 0.429 0.571 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.055 0.945 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.648 -26.322 1.086 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.161 3.839 10 N -0.365 5.365 11 C 0.390 3.610 12 O -0.506 6.506 13 N -0.320 5.320 14 C 0.097 3.903 15 C -0.152 4.152 16 C -0.106 4.106 17 C -0.067 4.067 18 N -0.234 5.234 19 C -0.104 4.104 20 C -0.012 4.012 21 O -0.317 6.317 22 C -0.014 4.014 23 C -0.103 4.103 24 C 0.104 3.896 25 F -0.121 7.121 26 C -0.201 4.201 27 H 0.078 0.922 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.245 0.755 31 H 0.269 0.731 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.046 -26.481 0.823 27.996 hybrid contribution 0.587 1.740 -0.007 1.836 sum 9.633 -24.741 0.815 26.563 Atomic orbital electron populations 1.70145 1.08287 1.28600 1.49868 1.26068 0.95778 1.03919 0.93904 0.85135 0.78502 0.76898 0.78541 1.19706 1.21115 1.17752 1.21592 0.94427 0.90278 1.52952 0.89523 1.18485 0.88051 0.83098 0.94285 1.45315 1.11374 1.03365 1.76476 1.16285 0.85023 0.81629 0.78029 1.90904 1.16354 1.84421 1.58967 1.42491 1.10524 1.02490 1.76476 1.17434 0.94446 0.83782 0.94613 1.21107 1.03080 0.90734 1.00311 1.21486 0.94787 0.97304 0.96977 1.18679 0.96641 0.89759 1.01624 1.59700 1.39749 0.99117 1.24845 1.22923 1.01221 0.97410 0.88878 1.22762 0.90397 0.88343 0.99654 1.87967 1.58609 1.50682 1.34410 1.22803 1.00088 0.93378 0.85088 1.22947 0.92941 0.93527 1.00933 1.17475 0.85306 0.92349 0.94471 1.91447 1.51304 1.94542 1.74786 1.21009 1.00453 0.95322 1.03290 0.92244 0.99408 0.99280 0.75475 0.73131 0.81136 0.81830 0.92141 0.90101 0.92637 0.86163 0.92656 0.85915 0.89314 0.92015 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.99 41.57 29.54 68.60 2.03 43.60 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.55 -29.42 9.28 25.60 0.24 -29.18 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.28 15.31 5.43 85.63 0.46 15.78 16 10 N -0.71 -29.08 5.55 -482.28 -2.68 -31.76 16 11 C 0.69 27.55 8.30 179.06 1.49 29.04 16 12 O -0.63 -31.46 14.03 -4.01 -0.06 -31.52 16 13 N -0.67 -18.30 5.36 -317.02 -1.70 -20.00 16 14 C 0.19 5.20 6.28 38.09 0.24 5.44 16 15 C -0.13 -2.34 9.96 22.39 0.22 -2.12 16 16 C -0.09 -1.44 8.62 22.38 0.19 -1.24 16 17 C 0.03 0.65 4.75 38.15 0.18 0.83 16 18 N -0.51 -10.16 4.54 -693.84 -3.15 -13.31 16 19 C 0.02 0.36 5.41 86.31 0.47 0.83 16 20 C 0.07 0.95 7.01 72.01 0.50 1.45 16 21 O -0.40 -6.58 10.83 -148.98 -1.61 -8.19 16 22 C 0.06 0.84 7.01 72.02 0.50 1.35 16 23 C 0.02 0.34 5.37 86.31 0.46 0.80 16 24 C 0.12 3.75 7.31 22.47 0.16 3.91 16 25 F -0.14 -4.77 17.07 44.97 0.77 -4.00 16 26 C -0.18 -5.91 8.63 22.41 0.19 -5.72 16 27 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.41 13.22 8.34 -92.71 -0.77 12.45 16 31 H 0.43 7.66 8.84 -92.71 -0.82 6.84 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.16 1.74 7.04 -2.91 -0.02 1.72 16 34 H 0.06 0.85 7.41 -2.39 -0.02 0.84 16 35 H 0.08 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 0.75 7.22 -2.39 -0.02 0.74 16 42 H 0.12 4.72 6.41 -2.91 -0.02 4.70 16 Total: -1.00 -76.27 354.66 -0.85 -77.12 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.52 Total: 21.66 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 5.78 Total: 21.78 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.24 Total: -120.45 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.67 Total: -39.71 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.77 Total: -4.00 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -76.27 -0.85 -77.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785772070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.874 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds