Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48500 * 109.46871 * 270.00000 * 3 2 1 5 5 H 1.48491 * 109.47101 * 30.00354 * 3 2 1 6 6 H 1.48504 * 109.46853 * 150.00601 * 3 2 1 7 7 C 1.37878 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99353 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00495 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00207 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99722 * 355.04320 * 11 10 9 13 13 N 1.34774 * 120.00008 * 175.04128 * 11 10 9 14 14 C 1.46924 * 120.63078 * 185.52166 * 13 11 10 15 15 C 1.53187 * 108.77761 * 233.58843 * 14 13 11 16 16 C 1.53049 * 109.31240 * 305.36595 * 15 14 13 17 17 O 1.42895 * 109.45952 * 181.38758 * 16 15 14 18 18 C 1.35959 * 117.00178 * 155.64487 * 17 16 15 19 19 C 1.39183 * 120.43895 * 355.38144 * 18 17 16 20 20 C 1.38449 * 118.40293 * 180.02562 * 19 18 17 21 21 C 1.38558 * 119.19780 * 359.97438 * 20 19 18 22 22 F 1.35102 * 119.58671 * 180.02562 * 21 20 19 23 23 N 1.31989 * 120.82209 * 359.97438 * 21 20 19 24 24 C 1.31929 * 121.74116 * 0.04054 * 23 21 20 25 25 C 1.53032 * 109.52691 * 61.36998 * 16 15 14 26 26 C 1.46922 * 120.62901 * 5.49832 * 13 11 10 27 27 H 0.97004 * 120.00075 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46719 * 60.00133 * 9 7 2 29 29 H 1.08999 * 109.47338 * 300.00746 * 9 7 2 30 30 H 0.97003 * 119.99626 * 0.02562 * 10 9 7 31 31 H 1.08998 * 109.58622 * 113.80109 * 14 13 11 32 32 H 1.09002 * 109.70119 * 353.44588 * 14 13 11 33 33 H 1.09005 * 109.50360 * 185.41488 * 15 14 13 34 34 H 1.09004 * 109.49878 * 65.31386 * 15 14 13 35 35 H 1.09000 * 109.45679 * 301.35682 * 16 15 14 36 36 H 1.07998 * 120.79770 * 359.97438 * 19 18 17 37 37 H 1.08002 * 120.40214 * 179.72847 * 20 19 18 38 38 H 1.08003 * 119.64045 * 179.97438 * 24 23 21 39 39 H 1.09002 * 109.49900 * 58.57767 * 25 16 15 40 40 H 1.08994 * 109.50224 * 178.68028 * 25 16 15 41 41 H 1.09002 * 109.58685 * 246.19580 * 26 13 11 42 42 H 1.08998 * 109.59121 * 6.48450 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0009 12 8 6.1143 -1.9012 -0.0920 13 7 5.7750 -4.0880 0.1001 14 6 7.2128 -4.3639 0.2230 15 6 7.6181 -5.3624 -0.8657 16 6 6.7292 -6.6046 -0.7695 17 8 7.1259 -7.5519 -1.7631 18 6 6.8303 -8.8573 -1.5242 19 6 6.2569 -9.2407 -0.3153 20 6 5.9738 -10.5813 -0.1165 21 6 6.2679 -11.4902 -1.1201 22 9 5.9944 -12.8002 -0.9346 23 7 6.8109 -11.0921 -2.2553 24 6 7.0952 -9.8238 -2.4815 25 6 5.2690 -6.2076 -0.9976 26 6 4.8370 -5.2187 0.0899 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6805 0.8889 29 1 3.8745 -0.6800 -0.8910 30 1 3.3695 -3.3126 -0.0010 31 1 7.4206 -4.7894 1.2047 32 1 7.7764 -3.4391 0.0988 33 1 8.6605 -5.6493 -0.7266 34 1 7.4948 -4.9019 -1.8460 35 1 6.8341 -7.0504 0.2196 36 1 6.0388 -8.5101 0.4495 37 1 5.5328 -10.9150 0.8111 38 1 7.5397 -9.5357 -3.4227 39 1 5.1681 -5.7390 -1.9766 40 1 4.6391 -7.0959 -0.9523 41 1 4.8511 -5.7140 1.0608 42 1 3.8307 -4.8570 -0.1212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = -60.639045 kcal Electronic energy + Delta-G solvation = -26620.516343 eV Core-core repulsion = 22516.198938 eV Total energy + Delta-G solvation = -4104.317405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.30178 -41.28597 -40.09184 -38.81573 -36.70036 -34.48017 -32.98524 -32.78226 -32.09907 -31.29353 -30.20106 -27.88661 -25.59387 -24.50201 -23.64471 -23.32792 -22.11061 -20.99564 -19.55356 -18.82648 -18.57300 -18.11598 -17.74786 -16.51246 -16.50360 -16.02166 -15.67218 -15.37214 -15.26530 -15.13513 -14.53374 -14.42140 -14.27316 -14.15472 -13.70001 -13.65100 -13.44221 -13.19911 -12.98462 -12.73214 -12.45883 -12.31536 -12.13733 -11.92153 -11.58958 -11.02804 -10.96475 -10.92989 -10.79568 -10.43432 -10.24184 -10.00335 -9.63757 -9.50727 -8.83252 -8.77741 -8.70206 -8.07935 -6.24490 -4.26836 0.45367 0.57009 2.48958 2.91370 3.08093 3.22137 3.25252 3.32305 3.40166 3.63479 3.94639 4.03543 4.19047 4.25718 4.30827 4.38860 4.47331 4.58297 4.61829 4.73841 4.96712 5.00010 5.11087 5.14797 5.23776 5.27718 5.28754 5.43012 5.45214 5.50470 5.73457 5.74791 5.87563 5.97701 6.49362 6.70480 6.71077 7.06459 7.15263 7.17100 7.29347 7.42077 8.19769 8.57379 8.73975 9.07835 9.36170 10.87365 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002304 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.807272 B =12150.236551 C =12930.924996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.722 5.722 11 C 0.700 3.300 12 O -0.598 6.598 13 N -0.639 5.639 14 C 0.135 3.865 15 C -0.129 4.129 16 C 0.085 3.915 17 O -0.296 6.296 18 C 0.080 3.920 19 C -0.141 4.141 20 C -0.148 4.148 21 C 0.262 3.738 22 F -0.114 7.114 23 N -0.476 5.476 24 C 0.108 3.892 25 C -0.160 4.160 26 C 0.116 3.884 27 H 0.268 0.732 28 H 0.023 0.977 29 H 0.020 0.980 30 H 0.391 0.609 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.176 0.824 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.368 -20.768 0.347 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.114 3.886 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.477 6.477 13 N -0.379 5.379 14 C 0.011 3.989 15 C -0.167 4.167 16 C 0.029 3.971 17 O -0.208 6.208 18 C 0.031 3.969 19 C -0.167 4.167 20 C -0.169 4.169 21 C 0.109 3.891 22 F -0.094 7.094 23 N -0.190 5.190 24 C -0.050 4.050 25 C -0.199 4.199 26 C -0.008 4.008 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.227 0.773 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.991 -20.471 -0.470 25.378 hybrid contribution -0.471 0.690 0.813 1.166 sum 14.520 -19.781 0.343 24.540 Atomic orbital electron populations 1.69876 1.06214 1.27471 1.49381 1.24780 0.94789 0.99182 0.93841 0.86807 0.80557 0.83169 0.79099 1.19815 1.20917 1.18471 1.21062 0.88493 0.95158 1.53416 0.90385 1.19387 0.94899 0.77564 0.96710 1.45588 1.03703 1.11156 1.77109 1.16010 0.83694 0.82134 0.78048 1.90862 1.55426 1.42819 1.58627 1.47308 1.06644 1.04611 1.79346 1.21320 0.81097 0.99672 0.96779 1.22040 0.99311 0.93468 1.01894 1.22615 0.95124 0.88423 0.90933 1.86209 1.75468 1.12394 1.46720 1.20137 0.96504 0.85870 0.94385 1.21709 1.00892 0.96697 0.97448 1.21707 1.02131 0.92606 1.00428 1.18033 0.99760 0.79672 0.91677 1.91624 1.91109 1.32012 1.94627 1.67065 1.12368 1.18457 1.21111 1.21921 0.99517 0.84509 0.99093 1.22518 0.95384 1.00306 1.01665 1.21519 0.94015 0.87234 0.98036 0.92229 0.95924 0.96221 0.77285 0.91775 0.87778 0.89692 0.89900 0.90490 0.82874 0.83070 0.80728 0.89673 0.90233 0.91304 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.54 -14.63 9.83 -34.44 -0.34 -14.96 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 9 C 0.24 5.75 4.50 -5.20 -0.02 5.73 16 10 N -0.72 -14.36 5.46 -66.42 -0.36 -14.72 16 11 C 0.70 13.15 8.29 -86.92 -0.72 12.42 16 12 O -0.60 -13.51 15.77 5.28 0.08 -13.43 16 13 N -0.64 -8.45 2.97 -178.50 -0.53 -8.98 16 14 C 0.14 1.42 6.44 -3.71 -0.02 1.39 16 15 C -0.13 -1.08 5.73 -26.61 -0.15 -1.23 16 16 C 0.09 0.64 2.11 -26.69 -0.06 0.58 16 17 O -0.30 -2.48 9.81 -19.61 -0.19 -2.67 16 18 C 0.08 0.63 6.56 -39.10 -0.26 0.37 16 19 C -0.14 -0.93 8.59 -39.15 -0.34 -1.27 16 20 C -0.15 -1.02 10.08 -39.39 -0.40 -1.42 16 21 C 0.26 2.47 8.41 -17.37 -0.15 2.32 16 22 F -0.11 -1.15 17.29 2.25 0.04 -1.11 16 23 N -0.48 -4.88 10.37 -13.48 -0.14 -5.02 16 24 C 0.11 0.91 11.13 -17.38 -0.19 0.72 16 25 C -0.16 -1.32 5.53 -26.61 -0.15 -1.47 16 26 C 0.12 1.13 6.39 -3.71 -0.02 1.10 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 29 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 30 H 0.39 6.81 5.81 -40.82 -0.24 6.57 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.30 7.00 -51.93 -0.36 0.94 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.45 5.91 -51.93 -0.31 0.14 16 36 H 0.15 0.70 5.94 -52.49 -0.31 0.39 16 37 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.55 7.59 -51.93 -0.39 0.16 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.95 5.65 -51.93 -0.29 0.66 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -33.45 348.55 -7.87 -41.32 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.21 Total: 1.81 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.91 Total: 6.38 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.26 Total: -54.05 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.11 Total: -16.10 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.45 -7.87 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.322 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds