Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37919 * 119.93398 * 2 1 4 4 C 1.39595 * 119.85997 * 180.30048 * 3 2 1 5 5 C 1.47794 * 120.12316 * 179.67297 * 4 3 2 6 6 O 1.21562 * 119.99109 * 119.07964 * 5 4 3 7 7 N 1.34769 * 120.00485 * 299.07753 * 5 4 3 8 8 C 1.46505 * 119.99801 * 5.10650 * 7 5 4 9 9 C 1.50696 * 109.47318 * 270.00082 * 8 7 5 10 10 H 1.08005 * 120.00001 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00101 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00153 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00021 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47498 * 89.99618 * 13 11 9 15 15 H 1.48497 * 109.47339 * 209.99832 * 13 11 9 16 16 H 1.48504 * 109.47024 * 329.99704 * 13 11 9 17 17 C 1.46495 * 120.00414 * 185.10999 * 7 5 4 18 18 C 1.53001 * 109.47191 * 263.45815 * 17 7 5 19 19 C 1.53000 * 109.46815 * 64.40757 * 18 17 7 20 20 C 1.53000 * 109.47030 * 184.40497 * 18 17 7 21 21 C 1.39629 * 119.74532 * 359.40454 * 4 3 2 22 22 C 1.50697 * 120.06920 * 180.29962 * 21 4 3 23 23 C 1.37874 * 119.86304 * 0.27036 * 21 4 3 24 24 C 1.38495 * 119.93419 * 179.67977 * 2 1 3 25 25 Cl 1.73604 * 119.86626 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.47001 * 270.31921 * 1 2 3 27 27 H 1.08993 * 109.47411 * 30.32123 * 1 2 3 28 28 H 1.09000 * 109.46966 * 150.32740 * 1 2 3 29 29 H 1.07989 * 120.06488 * 359.97192 * 3 2 1 30 30 H 1.09001 * 109.47383 * 30.00080 * 8 7 5 31 31 H 1.09000 * 109.47065 * 150.00275 * 8 7 5 32 32 H 0.97001 * 120.00311 * 180.02562 * 12 11 9 33 33 H 1.09009 * 109.46958 * 23.45555 * 17 7 5 34 34 H 1.09001 * 109.47492 * 143.45365 * 17 7 5 35 35 H 1.08997 * 109.47052 * 304.41253 * 18 17 7 36 36 H 1.08998 * 109.46995 * 184.23814 * 19 18 17 37 37 H 1.09000 * 109.47446 * 304.23711 * 19 18 17 38 38 H 1.09000 * 109.47182 * 64.24377 * 19 18 17 39 39 H 1.09000 * 109.46664 * 60.00570 * 20 18 17 40 40 H 1.09003 * 109.46504 * 179.97438 * 20 18 17 41 41 H 1.08993 * 109.47351 * 300.00340 * 20 18 17 42 42 H 1.08998 * 109.47009 * 94.64305 * 22 21 4 43 43 H 1.08997 * 109.47174 * 214.64616 * 22 21 4 44 44 H 1.08997 * 109.47251 * 334.64346 * 22 21 4 45 45 H 1.08003 * 119.93555 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5912 1.1934 -0.0063 5 6 4.3345 2.4708 -0.0137 6 8 5.0866 2.7415 0.9022 7 7 4.1786 3.3354 -1.0356 8 6 3.1904 3.0620 -2.0821 9 6 3.8355 2.2647 -3.1863 10 1 4.8773 1.9888 -3.1154 11 6 3.0957 1.8875 -4.2869 12 7 1.8273 2.2239 -4.3735 13 14 3.8952 0.8986 -5.6553 14 1 3.7479 -0.5512 -5.3694 15 1 3.2359 1.2178 -6.9470 16 1 5.3374 1.2429 -5.7373 17 6 4.9973 4.5486 -1.1002 18 6 4.2149 5.7238 -0.5106 19 6 3.9592 5.4713 0.9766 20 6 5.0251 7.0109 -0.6775 21 6 4.2824 -0.0198 -0.0001 22 6 5.7894 -0.0302 0.0000 23 6 3.5834 -1.2081 0.0067 24 6 2.1981 -1.2002 0.0067 25 17 1.3249 -2.7006 0.0144 26 1 -0.3633 0.0057 1.0276 27 1 -0.3634 0.8870 -0.5188 28 1 -0.3633 -0.8929 -0.5087 29 1 1.6553 2.1304 -0.0005 30 1 2.3618 2.4935 -1.6599 31 1 2.8172 4.0038 -2.4844 32 1 1.3068 1.9582 -5.1477 33 1 5.9138 4.3992 -0.5293 34 1 5.2474 4.7633 -2.1392 35 1 3.2624 5.8238 -1.0311 36 1 3.3380 6.2712 1.3794 37 1 3.4479 4.5167 1.1005 38 1 4.9097 5.4462 1.5095 39 1 5.2072 7.1907 -1.7370 40 1 4.4675 7.8481 -0.2578 41 1 5.9775 6.9107 -0.1570 42 1 6.1521 -0.1105 1.0247 43 1 6.1468 -0.8811 -0.5799 44 1 6.1591 0.8936 -0.4449 45 1 4.1169 -2.1472 0.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793246738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = -51.586011 kcal Electronic energy + Delta-G solvation = -26385.685070 eV Core-core repulsion = 22813.636953 eV Total energy + Delta-G solvation = -3572.048117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57049 -39.81250 -37.60862 -37.29584 -35.74680 -34.77236 -34.18374 -32.00380 -30.28118 -29.33114 -28.02834 -27.36061 -25.93817 -25.18711 -24.08259 -22.57836 -21.04732 -19.93657 -18.55019 -18.08794 -17.44626 -17.15275 -17.14122 -16.42471 -15.87638 -15.54036 -15.35072 -15.16956 -14.82526 -14.35774 -14.30741 -14.15419 -13.91017 -13.74474 -13.65321 -13.34849 -13.19335 -13.12820 -12.96312 -12.88243 -12.78482 -12.73484 -12.63423 -12.38534 -12.27562 -12.13762 -11.94934 -11.82484 -11.70554 -11.57423 -11.51135 -10.81622 -10.54501 -9.76679 -9.47650 -9.34437 -8.17766 -6.29308 -0.06278 0.27941 1.08620 1.38140 1.40718 1.48322 1.68552 2.21592 2.42246 2.66484 3.13681 3.58573 3.71670 3.76556 3.94623 4.04948 4.05796 4.19516 4.25437 4.42328 4.51992 4.64060 4.66947 4.69229 4.73195 4.77868 4.80575 4.83416 4.89050 4.93711 5.01825 5.03418 5.07717 5.08202 5.21394 5.23418 5.25873 5.32676 5.42500 5.43433 5.47676 5.67155 5.75901 5.85463 6.09367 6.53790 6.81707 7.25612 7.41745 8.87672 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.005824 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.541235 B = 4806.510260 C = 6276.793737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.074 4.074 4 C -0.114 4.114 5 C 0.563 3.437 6 O -0.574 6.574 7 N -0.587 5.587 8 C 0.244 3.756 9 C -0.536 4.536 10 H 0.047 0.953 11 C 0.028 3.972 12 N -0.914 5.914 13 Si 0.943 3.057 14 H -0.278 1.278 15 H -0.280 1.280 16 H -0.270 1.270 17 C 0.120 3.880 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.051 4.051 22 C -0.104 4.104 23 C -0.113 4.113 24 C -0.028 4.028 25 Cl -0.057 7.057 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.042 0.958 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -2.067 8.364 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.093 4.093 4 C -0.117 4.117 5 C 0.352 3.648 6 O -0.456 6.456 7 N -0.315 5.315 8 C 0.124 3.876 9 C -0.575 4.575 10 H 0.065 0.935 11 C -0.172 4.172 12 N -0.553 5.553 13 Si 0.769 3.231 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.195 1.195 17 C -0.003 4.003 18 C -0.127 4.127 19 C -0.185 4.185 20 C -0.192 4.192 21 C -0.052 4.052 22 C -0.161 4.161 23 C -0.132 4.132 24 C -0.055 4.055 25 Cl -0.028 7.028 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.710 -2.038 8.678 8.943 hybrid contribution 0.069 -0.537 -1.187 1.305 sum 0.779 -2.575 7.491 7.960 Atomic orbital electron populations 1.20856 0.88515 1.03778 1.03660 1.19836 0.98078 0.90763 1.00368 1.20979 0.92368 0.98031 0.97948 1.19907 0.94371 0.93702 1.03684 1.18284 0.81305 0.83513 0.81731 1.90673 1.40455 1.77847 1.36627 1.48139 1.38647 1.21193 1.23559 1.19302 0.87446 0.96014 0.84858 1.21552 0.96773 1.34808 1.04380 0.93458 1.25480 0.95200 0.96665 0.99899 1.69979 1.07834 1.46717 1.30753 0.85783 0.78911 0.79264 0.79180 1.20336 1.20581 1.19514 1.21562 0.93940 0.83708 1.01056 1.21452 0.99385 0.95313 0.96543 1.21659 1.01265 1.00213 0.95321 1.21700 0.99902 0.95467 1.02160 1.19913 0.97228 0.90962 0.97139 1.20747 0.89377 1.02677 1.03283 1.20958 0.91824 0.98716 1.01665 1.20953 0.92463 0.86986 1.05086 1.98327 1.76366 1.31305 1.96794 0.88939 0.91146 0.90521 0.85285 0.93992 0.96214 0.92528 0.90920 0.91033 0.92144 0.91771 0.95354 0.92979 0.92210 0.91165 0.92084 0.89498 0.89287 0.93658 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 9.61 71.24 0.68 -2.35 16 2 C -0.09 -2.99 5.88 -19.88 -0.12 -3.11 16 3 C -0.07 -2.79 7.33 22.52 0.17 -2.63 16 4 C -0.11 -4.52 4.95 -20.09 -0.10 -4.62 16 5 C 0.56 23.57 4.58 86.77 0.40 23.97 16 6 O -0.57 -24.97 14.67 -3.91 -0.06 -25.03 16 7 N -0.59 -24.57 2.22 -829.63 -1.84 -26.41 16 8 C 0.24 11.60 4.93 85.63 0.42 12.02 16 9 C -0.54 -27.89 9.38 25.60 0.24 -27.65 16 10 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 11 C 0.03 1.48 5.46 84.66 0.46 1.94 16 12 N -0.91 -49.83 13.29 21.45 0.28 -49.54 16 13 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.12 4.37 4.95 86.38 0.43 4.79 16 18 C -0.11 -3.31 3.12 -10.79 -0.03 -3.34 16 19 C -0.13 -3.93 8.27 71.98 0.60 -3.33 16 20 C -0.13 -3.20 9.19 71.98 0.66 -2.54 16 21 C -0.05 -1.83 5.91 -19.62 -0.12 -1.95 16 22 C -0.10 -3.30 9.39 71.23 0.67 -2.63 16 23 C -0.11 -3.55 9.49 22.25 0.21 -3.34 16 24 C -0.03 -0.89 6.32 22.40 0.14 -0.75 16 25 Cl -0.06 -1.51 27.27 -2.72 -0.07 -1.58 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 28 H 0.08 1.99 6.89 -2.39 -0.02 1.97 16 29 H 0.13 4.76 7.26 -2.92 -0.02 4.74 16 30 H 0.04 2.06 4.44 -2.39 -0.01 2.05 16 31 H 0.02 1.00 7.96 -2.39 -0.02 0.98 16 32 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.07 2.65 7.31 -2.38 -0.02 2.63 16 34 H 0.07 2.63 8.12 -2.39 -0.02 2.61 16 35 H 0.06 2.00 8.03 -2.39 -0.02 1.98 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.03 1.00 6.13 -2.39 -0.01 0.99 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.09 2.34 8.12 -2.39 -0.02 2.32 16 44 H 0.04 1.65 6.75 -2.39 -0.02 1.63 16 45 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -59.02 377.33 6.03 -52.99 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.98 Total: 20.89 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.71 Total: -15.52 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.55 Total: -75.95 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal Total: -59.02 6.03 -52.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793246738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.404 kcal (2) G-P(sol) polarization free energy of solvation -59.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds