Wall clock time and date at job start Tue Mar 31 2020 14:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50699 * 115.55288 * 2 1 4 4 N 1.31799 * 119.08741 * 214.41545 * 3 2 1 5 5 C 1.32507 * 120.99516 * 180.02562 * 4 3 2 6 6 C 1.38204 * 119.18389 * 0.02562 * 5 4 3 7 7 C 1.39514 * 118.34134 * 359.97438 * 6 5 4 8 8 N 1.38946 * 120.53002 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00185 * 174.55067 * 8 7 6 10 10 O 1.21540 * 120.00192 * 5.76811 * 9 8 7 11 11 C 1.47843 * 119.99926 * 185.76631 * 9 8 7 12 12 C 1.39941 * 120.02639 * 359.72371 * 11 9 8 13 13 C 1.38328 * 120.35221 * 179.76182 * 12 11 9 14 14 C 1.37757 * 120.41197 * 0.52028 * 13 12 11 15 15 C 1.40746 * 120.04802 * 359.73825 * 14 13 12 16 16 C 1.41434 * 120.17836 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00065 * 33.55418 * 16 15 14 18 18 C 1.39940 * 120.00184 * 213.56150 * 16 15 14 19 19 N 1.30822 * 119.99644 * 358.18333 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 178.18535 * 18 16 15 21 21 H 1.48499 * 109.47121 * 89.99648 * 20 18 16 22 22 H 1.48495 * 109.47225 * 209.99814 * 20 18 16 23 23 H 1.48501 * 109.47202 * 329.99978 * 20 18 16 24 24 C 1.39023 * 120.02363 * 180.02562 * 11 9 8 25 25 N 1.31739 * 119.08415 * 34.39898 * 3 2 1 26 26 C 1.53005 * 117.50000 * 145.67207 * 2 1 3 27 27 C 1.52999 * 117.50053 * 214.33085 * 2 1 3 28 28 H 1.09004 * 109.47207 * 85.58060 * 1 2 3 29 29 H 1.08996 * 109.47472 * 205.57967 * 1 2 3 30 30 H 1.09004 * 109.47126 * 325.57953 * 1 2 3 31 31 H 1.07996 * 120.40683 * 179.97438 * 5 4 3 32 32 H 1.08003 * 120.83134 * 179.72936 * 6 5 4 33 33 H 0.97000 * 119.99904 * 354.55249 * 8 7 6 34 34 H 1.07999 * 119.82276 * 0.02797 * 12 11 9 35 35 H 1.07994 * 119.79240 * 180.25466 * 13 12 11 36 36 H 1.08007 * 119.97267 * 179.76088 * 14 13 12 37 37 H 0.97005 * 119.99546 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.20489 * 359.95752 * 24 11 9 39 39 H 1.08997 * 117.49922 * 214.99852 * 26 2 1 40 40 H 1.08998 * 117.49561 * 0.02562 * 26 2 1 41 41 H 1.09010 * 117.49578 * 359.97438 * 27 2 1 42 42 H 1.09003 * 117.50123 * 144.96932 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 7 3.3135 1.5278 -0.6510 5 6 3.9179 2.7068 -0.6755 6 6 3.3454 3.7715 -0.0057 7 6 2.1453 3.5589 0.6732 8 7 1.5305 4.5973 1.3620 9 6 0.3186 4.4104 1.9214 10 8 -0.1902 3.3066 1.9148 11 6 -0.3919 5.5481 2.5433 12 6 0.1959 6.8180 2.5564 13 6 -0.4650 7.8882 3.1320 14 6 -1.7041 7.7144 3.7082 15 6 -2.3088 6.4435 3.7094 16 6 -3.5812 6.2621 4.2997 17 1 -4.3128 7.0557 4.2606 18 6 -3.8923 5.0543 4.9345 19 7 -3.0192 4.0803 4.9510 20 14 -5.5543 4.8331 5.7582 21 1 -6.5231 4.2806 4.7777 22 1 -5.4189 3.8961 6.9022 23 1 -6.0421 6.1469 6.2494 24 6 -1.6417 5.3558 3.1209 25 7 1.5991 2.3471 0.6504 26 6 2.2364 -1.1208 0.7653 27 6 2.2364 -1.1207 -0.7654 28 1 -0.3634 0.0792 -1.0246 29 1 -0.3634 -0.9269 0.4437 30 1 -0.3633 0.8478 0.5809 31 1 4.8467 2.8338 -1.2116 32 1 3.8174 4.7430 -0.0045 33 1 1.9734 5.4566 1.4403 34 1 1.1689 6.9641 2.1110 35 1 -0.0047 8.8651 3.1335 36 1 -2.2121 8.5542 4.1590 37 1 -3.2350 3.2430 5.3907 38 1 -2.0974 4.3766 3.1168 39 1 3.1713 -0.8747 1.2688 40 1 1.6111 -1.8583 1.2685 41 1 1.6111 -1.8583 -1.2686 42 1 3.1711 -0.8745 -1.2693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798235090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:47 Heat of formation + Delta-G solvation = 53.171197 kcal Electronic energy + Delta-G solvation = -26046.520676 eV Core-core repulsion = 22377.907678 eV Total energy + Delta-G solvation = -3668.612998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40494 -40.88833 -39.03430 -38.51039 -36.37546 -35.54837 -34.12302 -32.53758 -31.45930 -31.25064 -29.52548 -27.31309 -26.10613 -25.67428 -23.83397 -23.26533 -22.79920 -21.51442 -21.24059 -19.68874 -18.72907 -18.28154 -17.53964 -16.90708 -16.65468 -16.62460 -16.41261 -16.38353 -15.67934 -15.57740 -15.10513 -14.96436 -14.72944 -14.47611 -14.33696 -14.07377 -13.58495 -13.29775 -12.91624 -12.89673 -12.86469 -12.73893 -12.49516 -12.35441 -12.19972 -11.96942 -11.74284 -11.57034 -11.51359 -11.27110 -11.18101 -11.06094 -10.65339 -9.94555 -9.78810 -9.49810 -9.32282 -8.54845 -6.45723 -0.20635 0.11095 0.46998 0.99636 1.36286 1.44467 1.51222 1.69929 2.02113 2.20387 2.60529 2.78158 2.81154 3.00331 3.30576 3.62353 3.68749 3.75319 3.86290 4.04685 4.06555 4.21863 4.36177 4.42181 4.45328 4.53627 4.72460 4.81550 4.84958 4.86528 4.95467 4.99307 5.05908 5.11145 5.14925 5.27568 5.32369 5.39492 5.48623 5.56112 5.74701 5.82843 5.92225 6.07102 6.26487 6.40756 6.59054 6.88646 6.92594 7.06053 7.31314 8.37224 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.003425 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.154994 B = 8172.078515 C = 9954.980215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.101 4.101 3 C 0.362 3.638 4 N -0.550 5.550 5 C 0.169 3.831 6 C -0.256 4.256 7 C 0.380 3.620 8 N -0.640 5.640 9 C 0.551 3.449 10 O -0.511 6.511 11 C -0.146 4.146 12 C -0.183 4.183 13 C -0.101 4.101 14 C -0.200 4.200 15 C 0.061 3.939 16 C -0.499 4.499 17 H 0.082 0.918 18 C 0.023 3.977 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.251 1.251 24 C -0.115 4.115 25 N -0.549 5.549 26 C -0.150 4.150 27 C -0.124 4.124 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.219 0.781 32 H 0.191 0.809 33 H 0.436 0.564 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.112 0.888 37 H 0.282 0.718 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.335 -2.572 -10.019 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.103 4.103 3 C 0.095 3.905 4 N -0.267 5.267 5 C 0.006 3.994 6 C -0.281 4.281 7 C 0.141 3.859 8 N -0.289 5.289 9 C 0.341 3.659 10 O -0.383 6.383 11 C -0.149 4.149 12 C -0.202 4.202 13 C -0.119 4.119 14 C -0.220 4.220 15 C 0.059 3.941 16 C -0.529 4.529 17 H 0.101 0.899 18 C -0.189 4.189 19 N -0.470 5.470 20 Si 0.809 3.191 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.136 4.136 25 N -0.270 5.270 26 C -0.188 4.188 27 C -0.161 4.161 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.235 0.765 32 H 0.209 0.791 33 H 0.278 0.722 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.489 -4.354 -9.872 17.273 hybrid contribution -0.534 1.102 0.865 1.499 sum 12.955 -3.252 -9.007 16.110 Atomic orbital electron populations 1.21191 0.90891 1.02482 1.01665 1.19856 0.94632 0.84846 1.10987 1.22199 0.87627 0.93518 0.87187 1.68157 1.10412 1.26736 1.21379 1.23790 0.98564 0.85660 0.91405 1.22678 0.96403 1.05222 1.03796 1.19208 0.90148 0.87088 0.89458 1.43447 1.18804 1.14545 1.52112 1.19094 0.80736 0.88789 0.77305 1.90810 1.66270 1.26455 1.54798 1.19709 0.96854 0.93518 1.04832 1.20974 1.01197 0.90967 1.07092 1.20975 0.94485 0.98886 0.97571 1.21590 0.97151 0.97164 1.06066 1.17980 0.94046 0.91823 0.90291 1.19836 0.99709 1.00533 1.32869 0.89943 1.26839 1.02090 0.94292 0.95697 1.69869 1.36498 1.04700 1.35970 0.85108 0.76687 0.79368 0.77975 1.19036 1.19715 1.17484 1.21683 0.94585 1.00247 0.97043 1.68068 1.36272 1.00112 1.22530 1.23178 1.01506 0.98214 0.95911 1.23157 1.02409 0.97028 0.93528 0.92177 0.90478 0.93847 0.76461 0.79141 0.72182 0.83908 0.83764 0.86965 0.90758 0.87610 0.89433 0.86746 0.86259 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.25 9.79 71.98 0.70 -2.55 16 2 C -0.10 -2.93 2.62 -52.93 -0.14 -3.06 16 3 C 0.36 11.90 7.12 138.76 0.99 12.89 16 4 N -0.55 -14.55 9.30 -188.07 -1.75 -16.30 16 5 C 0.17 3.24 11.29 84.58 0.96 4.20 16 6 C -0.26 -5.23 10.04 22.57 0.23 -5.00 16 7 C 0.38 12.16 7.45 133.01 0.99 13.15 16 8 N -0.64 -20.72 5.32 -310.62 -1.65 -22.37 16 9 C 0.55 24.48 7.73 86.79 0.67 25.15 16 10 O -0.51 -27.27 14.64 -3.84 -0.06 -27.33 16 11 C -0.15 -6.72 5.87 -20.13 -0.12 -6.84 16 12 C -0.18 -6.69 9.55 22.70 0.22 -6.48 16 13 C -0.10 -3.75 10.01 22.18 0.22 -3.53 16 14 C -0.20 -9.00 9.78 22.77 0.22 -8.77 16 15 C 0.06 3.25 5.55 -21.32 -0.12 3.13 16 16 C -0.50 -27.14 9.05 23.47 0.21 -26.93 16 17 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 18 C 0.02 1.20 5.40 85.26 0.46 1.66 16 19 N -0.84 -47.86 10.61 21.82 0.23 -47.63 16 20 Si 0.99 40.26 29.56 68.60 2.03 42.29 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 24 C -0.11 -6.34 8.21 23.01 0.19 -6.15 16 25 N -0.55 -21.15 7.05 -185.25 -1.31 -22.46 16 26 C -0.15 -3.51 9.88 30.62 0.30 -3.21 16 27 C -0.12 -2.58 9.73 30.62 0.30 -2.28 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.02 7.90 -2.39 -0.02 2.00 16 30 H 0.04 1.76 7.37 -2.38 -0.02 1.74 16 31 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.44 10.00 6.76 -92.71 -0.63 9.37 16 34 H 0.14 3.66 6.40 -2.91 -0.02 3.64 16 35 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 36 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 37 H 0.28 14.92 8.30 -92.70 -0.77 14.15 16 38 H 0.11 6.62 5.71 -2.91 -0.02 6.60 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 40 H 0.11 2.34 8.05 -2.39 -0.02 2.32 16 41 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.11 2.27 7.50 -2.39 -0.02 2.25 16 Total: -1.00 -77.09 359.36 4.22 -72.87 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.44 Total: 35.54 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 6.29 Total: -14.61 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -4.48 Total: -108.76 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.06 Total: -27.33 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -77.09 4.22 -72.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798235090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.039 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds