Wall clock time and date at job start Tue Mar 31 2020 14:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47172 * 175.62070 * 3 2 1 5 5 C 1.36969 * 120.00054 * 264.55504 * 4 3 2 6 6 H 1.07998 * 120.00094 * 121.44774 * 5 4 3 7 7 C 1.38980 * 119.99885 * 301.44701 * 5 4 3 8 8 N 1.31417 * 119.99683 * 171.72886 * 7 5 4 9 9 Si 1.86793 * 120.00133 * 351.73129 * 7 5 4 10 10 H 1.48500 * 109.47132 * 90.82840 * 9 7 5 11 11 H 1.48497 * 109.47362 * 210.82998 * 9 7 5 12 12 H 1.48504 * 109.47219 * 330.83372 * 9 7 5 13 13 C 1.34778 * 120.00023 * 84.55386 * 4 3 2 14 14 O 1.21653 * 119.99617 * 5.07191 * 13 4 3 15 15 C 1.47173 * 120.00012 * 185.07472 * 13 4 3 16 16 C 1.46740 * 126.89352 * 353.11363 * 15 13 4 17 17 C 1.34413 * 106.52520 * 179.71626 * 16 15 13 18 18 C 1.50694 * 125.55503 * 180.24109 * 17 16 15 19 19 N 1.36757 * 108.89068 * 0.42602 * 17 16 15 20 20 C 1.39766 * 124.95441 * 179.82117 * 19 17 16 21 21 C 1.38957 * 119.68823 * 315.25327 * 20 19 17 22 22 C 1.38404 * 119.10754 * 179.97438 * 21 20 19 23 23 C 1.38800 * 118.48805 * 359.97438 * 22 21 20 24 24 C 1.38120 * 119.29244 * 0.02994 * 23 22 21 25 25 N 1.31902 * 120.84212 * 359.97147 * 24 23 22 26 26 C 1.35541 * 110.09882 * 359.55274 * 19 17 16 27 27 C 1.50697 * 125.86902 * 180.26564 * 26 19 17 28 28 H 4.40644 * 5.51389 * 180.02562 * 4 1 2 29 29 H 1.09009 * 109.47185 * 55.62811 * 3 2 1 30 30 H 1.08997 * 109.47509 * 295.62294 * 3 2 1 31 31 H 0.96993 * 119.99767 * 179.97438 * 8 7 5 32 32 H 1.07999 * 126.74025 * 359.94278 * 16 15 13 33 33 H 1.09001 * 109.47377 * 273.46963 * 18 17 16 34 34 H 1.09004 * 109.47225 * 33.47098 * 18 17 16 35 35 H 1.08998 * 109.47136 * 153.46574 * 18 17 16 36 36 H 1.08001 * 120.44395 * 0.02562 * 21 20 19 37 37 H 1.08007 * 120.75619 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.35698 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.57641 * 179.97438 * 24 23 22 40 40 H 1.08995 * 109.47163 * 89.99920 * 27 26 19 41 41 H 1.09006 * 109.47304 * 210.00322 * 27 26 19 42 42 H 1.09004 * 109.46811 * 330.00284 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3781 -0.1055 5 6 3.4679 1.8944 -1.3293 6 1 2.9695 2.7795 -1.6963 7 6 4.4483 1.2795 -2.0987 8 7 4.6562 1.6732 -3.3352 9 14 5.4706 -0.1065 -1.3754 10 1 4.8105 -1.4069 -1.6560 11 1 6.8233 -0.0957 -1.9880 12 1 5.5905 0.0809 0.0928 13 6 3.2535 2.1372 1.0017 14 8 3.0455 1.6515 2.0976 15 6 3.6360 3.5535 0.8851 16 6 4.0558 4.2551 -0.3335 17 6 4.3011 5.5276 0.0233 18 6 4.7556 6.6255 -0.9035 19 7 4.0750 5.6626 1.3653 20 6 4.2318 6.8484 2.0884 21 6 5.3594 7.6346 1.8850 22 6 5.5022 8.8066 2.6072 23 6 4.5073 9.1527 3.5110 24 6 3.4132 8.3233 3.6621 25 7 3.3048 7.2122 2.9596 26 6 3.6710 4.4804 1.8908 27 6 3.3206 4.2297 3.3349 28 1 -1.0503 -0.0004 0.0002 29 1 3.0096 -0.5794 -0.8483 30 1 3.0095 -0.4436 0.9266 31 1 5.3407 1.2442 -3.8721 32 1 4.1461 3.8330 -1.3234 33 1 5.8426 6.6077 -0.9823 34 1 4.3173 6.4730 -1.8898 35 1 4.4356 7.5898 -0.5089 36 1 6.1138 7.3354 1.1724 37 1 6.3677 9.4380 2.4700 38 1 4.5882 10.0603 4.0907 39 1 2.6366 8.5879 4.3644 40 1 2.2580 4.4172 3.4888 41 1 3.5476 3.1944 3.5895 42 1 3.9030 4.8964 3.9710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799088199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:26 Heat of formation + Delta-G solvation = 131.241945 kcal Electronic energy + Delta-G solvation = -26975.443833 eV Core-core repulsion = 23310.216237 eV Total energy + Delta-G solvation = -3665.227596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49769 -39.70379 -38.36028 -35.10150 -33.24115 -32.90702 -32.48313 -31.88145 -31.48582 -29.29586 -28.70007 -26.76432 -25.17996 -23.82181 -23.68721 -23.47232 -20.86853 -19.82760 -18.70165 -18.05059 -16.86458 -16.60574 -16.47389 -16.17808 -15.70216 -14.98903 -14.87149 -14.57270 -14.29858 -13.78756 -13.68348 -13.36744 -13.12538 -12.91756 -12.83891 -12.68631 -12.62778 -12.32677 -12.25879 -11.93391 -11.82798 -11.66088 -11.53510 -11.01021 -10.78861 -10.64279 -10.16416 -10.11860 -9.77488 -9.73694 -9.46510 -9.35541 -9.07975 -8.58724 -7.86010 -7.63196 -7.30190 -6.38908 -4.23356 0.71582 0.99991 2.43302 2.85471 3.07326 3.13072 3.25840 3.36254 3.41834 3.57650 3.59269 4.19189 4.33102 4.52942 4.55866 4.73488 4.76577 4.82772 4.86856 4.93884 5.21934 5.31109 5.37939 5.48519 5.57067 5.68313 5.80697 5.83960 5.88703 6.09011 6.13792 6.17735 6.24932 6.32808 6.39590 6.42921 6.53473 6.61531 6.76294 7.06724 7.42596 7.52585 7.68467 7.77726 7.95097 8.14658 8.31067 8.34439 9.03956 9.35938 9.74290 10.67757 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.004206 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.442707 B = 6655.138916 C = 7628.040008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.159 4.159 3 C 0.202 3.798 4 N -0.468 5.468 5 C -0.336 4.336 6 H 0.107 0.893 7 C 0.073 3.927 8 N -0.869 5.869 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.257 1.257 13 C 0.575 3.425 14 O -0.592 6.592 15 C -0.186 4.186 16 C -0.109 4.109 17 C -0.028 4.028 18 C -0.076 4.076 19 N -0.402 5.402 20 C 0.353 3.647 21 C -0.172 4.172 22 C -0.058 4.058 23 C -0.188 4.188 24 C 0.123 3.877 25 N -0.490 5.490 26 C 0.097 3.903 27 C -0.076 4.076 28 H 0.210 0.790 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.275 0.725 32 H 0.192 0.808 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 13.278 8.560 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.161 4.161 3 C 0.080 3.920 4 N -0.189 5.189 5 C -0.464 4.464 6 H 0.124 0.876 7 C -0.135 4.135 8 N -0.504 5.504 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.181 1.181 13 C 0.367 3.633 14 O -0.477 6.477 15 C -0.195 4.195 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.133 4.133 19 N -0.081 5.081 20 C 0.126 3.874 21 C -0.194 4.194 22 C -0.084 4.084 23 C -0.209 4.209 24 C -0.036 4.036 25 N -0.202 5.202 26 C -0.014 4.014 27 C -0.133 4.133 28 H 0.227 0.773 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.208 0.792 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.429 12.694 9.109 15.689 hybrid contribution 1.014 -0.087 -0.102 1.023 sum 2.443 12.607 9.008 15.685 Atomic orbital electron populations 1.24631 0.95624 1.01483 1.03743 1.23866 0.95010 0.99246 0.97959 1.18690 0.83560 0.87573 1.02184 1.43332 1.58494 1.10113 1.06922 1.19095 1.20031 1.14351 0.92875 0.87590 1.25538 0.95786 0.97263 0.94876 1.69655 1.32252 1.41619 1.06899 0.86885 0.80213 0.82177 0.81152 1.19795 1.21011 1.18100 1.17577 0.77122 0.85157 0.83421 1.90588 1.55579 1.74483 1.27012 1.20136 1.12584 0.93667 0.93149 1.23367 0.99464 0.89840 1.00511 1.20426 1.13039 0.98082 0.81463 1.20295 1.00957 0.94182 0.97881 1.41043 1.54620 1.05239 1.07206 1.18319 0.90145 0.87194 0.91743 1.21908 0.97846 0.96619 1.03006 1.21490 0.98551 0.95018 0.93388 1.22145 0.96035 1.01883 1.00791 1.22623 0.96824 0.88423 0.95685 1.67256 1.27786 1.17621 1.07513 1.20443 1.01394 0.83606 0.95975 1.20390 1.01404 1.03435 0.88115 0.77286 0.89033 0.89392 0.91477 0.79150 0.91479 0.89897 0.92846 0.83932 0.84146 0.84369 0.82110 0.90983 0.88443 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.57 19.25 29.55 0.57 -4.00 16 2 C -0.16 -3.53 13.62 -37.13 -0.51 -4.04 16 3 C 0.20 4.65 4.43 -6.83 -0.03 4.62 16 4 N -0.47 -11.70 1.78 -119.24 -0.21 -11.91 16 5 C -0.34 -8.67 6.64 -14.98 -0.10 -8.77 16 6 H 0.11 2.90 6.19 -52.49 -0.32 2.57 16 7 C 0.07 1.87 5.38 -17.45 -0.09 1.78 16 8 N -0.87 -23.11 13.96 55.50 0.77 -22.33 16 9 Si 0.87 20.25 25.46 -169.99 -4.33 15.92 16 10 H -0.27 -6.07 6.94 56.52 0.39 -5.68 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.58 14.51 7.56 -12.63 -0.10 14.41 16 14 O -0.59 -15.39 14.43 5.23 0.08 -15.32 16 15 C -0.19 -4.32 6.15 -103.35 -0.64 -4.96 16 16 C -0.11 -2.37 9.13 -37.50 -0.34 -2.71 16 17 C -0.03 -0.52 6.66 -81.75 -0.54 -1.06 16 18 C -0.08 -1.06 8.82 36.00 0.32 -0.75 16 19 N -0.40 -7.41 2.88 -54.12 -0.16 -7.56 16 20 C 0.35 5.44 6.21 -154.41 -0.96 4.48 16 21 C -0.17 -2.06 8.32 -39.25 -0.33 -2.39 16 22 C -0.06 -0.51 10.17 -39.31 -0.40 -0.91 16 23 C -0.19 -1.55 10.11 -39.42 -0.40 -1.94 16 24 C 0.12 1.28 11.18 -17.56 -0.20 1.08 16 25 N -0.49 -7.22 9.21 -12.30 -0.11 -7.34 16 26 C 0.10 2.00 6.84 -81.47 -0.56 1.45 16 27 C -0.08 -1.41 9.05 36.00 0.33 -1.09 16 28 H 0.21 3.07 7.80 -54.08 -0.42 2.65 16 29 H 0.09 2.06 5.38 -51.92 -0.28 1.78 16 30 H 0.09 1.96 7.52 -51.93 -0.39 1.57 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.19 4.48 5.03 -52.49 -0.26 4.21 16 33 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.67 6.98 -51.93 -0.36 0.31 16 36 H 0.14 1.59 7.00 -52.49 -0.37 1.23 16 37 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.10 1.94 6.35 -51.93 -0.33 1.61 16 42 H 0.05 0.83 7.46 -51.93 -0.39 0.44 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -31.87 354.83 -7.38 -39.26 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.80 Total: 8.72 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.97 Total: -4.78 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.29 Total: -49.15 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.33 Total: 15.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.87 -7.38 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799088199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.500 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds