Wall clock time and date at job start Tue Mar 31 2020 14:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48502 * 109.46862 * 239.99895 * 3 2 1 5 5 H 1.48494 * 109.47432 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47268 * 120.00284 * 3 2 1 7 7 C 1.37880 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99753 * 170.00050 * 10 9 7 12 12 C 1.53053 * 109.35981 * 183.19043 * 11 10 9 13 13 N 1.46962 * 109.36363 * 301.59803 * 12 11 10 14 14 C 1.46902 * 110.99604 * 183.19083 * 13 12 11 15 15 C 1.50706 * 109.46577 * 169.99972 * 14 13 12 16 16 C 1.38261 * 119.98703 * 269.72303 * 15 14 13 17 17 C 1.38225 * 120.04924 * 179.73083 * 16 15 14 18 18 C 1.38214 * 120.02580 * 0.54250 * 17 16 15 19 19 N 1.48008 * 120.01436 * 179.74849 * 18 17 16 20 20 O 1.21805 * 119.99482 * 359.97438 * 19 18 17 21 21 O 1.21793 * 120.00280 * 179.97438 * 19 18 17 22 22 C 1.38436 * 119.97490 * 359.73666 * 18 17 16 23 23 F 1.35103 * 120.02734 * 179.97438 * 22 18 17 24 24 C 1.38171 * 119.98491 * 89.99989 * 15 14 13 25 25 C 1.46952 * 110.87866 * 59.32024 * 13 12 11 26 26 C 1.46952 * 110.99968 * 293.80150 * 10 9 7 27 27 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46962 * 59.99875 * 9 7 2 29 29 H 1.08998 * 109.47513 * 300.00010 * 9 7 2 30 30 H 1.08999 * 109.49097 * 63.22812 * 11 10 9 31 31 H 1.09000 * 109.48830 * 303.15378 * 11 10 9 32 32 H 1.09004 * 109.48868 * 181.63526 * 12 11 10 33 33 H 1.08996 * 109.49096 * 61.56557 * 12 11 10 34 34 H 1.09000 * 109.46894 * 50.00205 * 14 13 12 35 35 H 1.09000 * 109.47263 * 289.99771 * 14 13 12 36 36 H 1.08003 * 119.97720 * 359.97438 * 16 15 14 37 37 H 1.08007 * 119.98712 * 180.27696 * 17 16 15 38 38 H 1.08006 * 120.01726 * 0.02562 * 24 15 14 39 39 H 1.09000 * 109.48724 * 60.65076 * 25 13 12 40 40 H 1.09001 * 109.48623 * 180.70590 * 25 13 12 41 41 H 1.08996 * 109.48806 * 296.77717 * 26 10 9 42 42 H 1.08994 * 109.49073 * 56.82039 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5211 -4.8939 0.2408 12 6 2.5567 -6.0186 0.3122 13 7 3.3188 -6.0597 -0.9437 14 6 4.2734 -7.1763 -0.9439 15 6 4.8563 -7.3384 -2.3241 16 6 4.2427 -8.1731 -3.2398 17 6 4.7731 -8.3185 -4.5079 18 6 5.9241 -7.6382 -4.8583 19 7 6.4949 -7.7984 -6.2144 20 8 5.9506 -8.5303 -7.0217 21 8 7.5089 -7.1984 -6.5231 22 6 6.5426 -6.8067 -3.9404 23 9 7.6680 -6.1416 -4.2817 24 6 6.0071 -6.6574 -2.6721 25 6 4.0032 -4.7815 -1.1830 26 6 2.9678 -3.6568 -1.2543 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5574 -0.8880 29 1 0.6248 -2.5563 0.8919 30 1 0.8249 -5.0918 -0.5743 31 1 0.9742 -4.8428 1.1823 32 1 2.0489 -6.9716 0.4607 33 1 3.2364 -5.8348 1.1442 34 1 3.7595 -8.0935 -0.6564 35 1 5.0738 -6.9701 -0.2333 36 1 3.3459 -8.7088 -2.9653 37 1 4.2904 -8.9673 -5.2238 38 1 6.4890 -6.0092 -1.9551 39 1 4.6995 -4.5837 -0.3680 40 1 4.5502 -4.8326 -2.1245 41 1 2.2880 -3.8406 -2.0863 42 1 3.4752 -2.7037 -1.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801525890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:02 Heat of formation + Delta-G solvation = -4.586705 kcal Electronic energy + Delta-G solvation = -26972.290546 eV Core-core repulsion = 22870.403753 eV Total energy + Delta-G solvation = -4101.886793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.63046 -42.37098 -40.23365 -38.64636 -36.78173 -35.53879 -33.09328 -32.20105 -31.52191 -30.58391 -29.06093 -27.18150 -25.48036 -24.02305 -23.73334 -23.16394 -21.96211 -21.42172 -19.77003 -19.37979 -18.95910 -17.88270 -17.61180 -16.96483 -16.40978 -16.33699 -15.99174 -15.61763 -15.04357 -14.95973 -14.66210 -14.37347 -14.19308 -13.79035 -13.60223 -13.57029 -12.93089 -12.69187 -12.31910 -12.24113 -12.04367 -11.83589 -11.79383 -11.38305 -11.36660 -11.27376 -11.02335 -10.87541 -10.73926 -10.55504 -10.42455 -10.00446 -9.84959 -9.57780 -9.27631 -8.52238 -8.45246 -7.35960 -6.08928 -4.11021 -0.59333 0.33467 0.92534 1.02699 2.62681 3.18909 3.29059 3.33661 3.35927 3.69777 3.85605 3.99965 4.17001 4.36401 4.39272 4.71950 4.77452 4.83002 4.96094 5.06719 5.12122 5.22446 5.24917 5.26550 5.34616 5.53566 5.62308 5.67953 5.71147 5.76808 5.86533 6.00151 6.10742 6.27607 6.42062 6.54401 6.87335 6.91641 7.21699 7.26508 7.35313 7.71362 7.99208 8.09926 8.45452 8.95863 9.53629 11.01861 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002792 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.505121 B =10027.619281 C =11069.616255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.533 5.533 14 C 0.081 3.919 15 C 0.012 3.988 16 C -0.109 4.109 17 C -0.028 4.028 18 C -0.090 4.090 19 N 0.032 4.968 20 O -0.159 6.159 21 O -0.151 6.151 22 C 0.174 3.826 23 F -0.103 7.103 24 C -0.152 4.152 25 C 0.051 3.949 26 C 0.068 3.932 27 H 0.263 0.737 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.410 -19.773 -3.724 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.264 5.264 11 C -0.074 4.074 12 C -0.065 4.065 13 N -0.259 5.259 14 C -0.046 4.046 15 C 0.011 3.989 16 C -0.128 4.128 17 C -0.047 4.047 18 C -0.175 4.175 19 N 0.551 4.449 20 O -0.374 6.374 21 O -0.368 6.368 22 C 0.153 3.847 23 F -0.080 7.080 24 C -0.172 4.172 25 C -0.077 4.077 26 C -0.061 4.061 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.174 0.826 37 H 0.180 0.820 38 H 0.177 0.823 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.002 -19.528 -3.070 21.721 hybrid contribution 0.718 1.110 -0.477 1.406 sum 9.721 -18.417 -3.547 21.125 Atomic orbital electron populations 1.69940 1.06078 1.26994 1.50699 1.24987 0.94867 0.99334 0.95328 0.86565 0.79470 0.82739 0.78669 1.20234 1.21295 1.20156 1.21094 0.93377 0.89956 1.50504 0.92005 1.19694 0.89978 0.87192 0.96166 1.62306 1.28291 1.02808 1.32995 1.22074 0.94654 0.89879 1.00749 1.22206 0.96094 0.99019 0.89209 1.62244 1.24822 1.02938 1.35847 1.21203 0.95652 0.96975 0.90783 1.20163 0.91165 0.90814 0.96725 1.21175 1.00777 0.99556 0.91291 1.21025 0.90861 0.95187 0.97631 1.21261 1.01947 1.09744 0.84573 1.43351 1.00210 0.99051 1.02240 1.94537 1.62485 1.34782 1.45577 1.94617 1.12870 1.46031 1.83246 1.17312 0.83892 0.90940 0.92599 1.91682 1.46871 1.77232 1.92256 1.21272 0.98167 1.03096 0.94662 1.22409 0.96563 0.88519 1.00202 1.21969 0.95393 0.97294 0.91428 0.92788 0.99042 0.95162 0.95008 0.90719 0.90798 0.93843 0.88645 0.92654 0.82625 0.81964 0.82323 0.93834 0.91224 0.95270 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.94 8.47 -34.44 -0.29 -14.23 16 8 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 10 N -0.54 -10.91 4.70 -235.92 -1.11 -12.02 16 11 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 12 C 0.06 0.76 5.61 -3.76 -0.02 0.74 16 13 N -0.53 -6.17 4.70 -235.91 -1.11 -7.27 16 14 C 0.08 0.63 5.12 -4.97 -0.03 0.61 16 15 C 0.01 0.10 4.89 -104.64 -0.51 -0.42 16 16 C -0.11 -0.73 9.70 -39.58 -0.38 -1.11 16 17 C -0.03 -0.22 9.55 -39.59 -0.38 -0.60 16 18 C -0.09 -0.96 6.86 -79.89 -0.55 -1.51 16 19 N 0.03 0.42 4.45 33.99 0.15 0.57 16 20 O -0.16 -2.06 18.45 -29.46 -0.54 -2.61 16 21 O -0.15 -2.18 17.42 -29.46 -0.51 -2.69 16 22 C 0.17 1.80 7.25 -39.42 -0.29 1.51 16 23 F -0.10 -1.22 15.48 2.25 0.03 -1.18 16 24 C -0.15 -1.28 7.90 -39.52 -0.31 -1.60 16 25 C 0.05 0.69 5.25 -3.77 -0.02 0.67 16 26 C 0.07 1.24 5.43 -3.77 -0.02 1.22 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.55 7.97 -51.93 -0.41 0.14 16 35 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.16 0.98 7.61 -52.48 -0.40 0.58 16 38 H 0.16 1.14 7.99 -52.48 -0.42 0.72 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.85 5.95 -51.93 -0.31 0.55 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.76 6.79 -51.93 -0.35 1.40 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -31.22 353.90 -10.59 -41.81 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -5.61 Total: -5.18 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.94 Total: -7.48 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -1.33 Total: -44.23 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -1.06 Total: -5.30 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.03 Total: -1.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.22 -10.59 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801525890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.221 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds