Wall clock time and date at job start Tue Mar 31 2020 15:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39558 * 120.14266 * 324.82717 * 3 2 1 5 5 C 1.37947 * 119.85218 * 179.97438 * 4 3 2 6 6 C 1.38363 * 120.14679 * 359.72764 * 5 4 3 7 7 C 1.38324 * 120.28460 * 0.55089 * 6 5 4 8 8 C 1.38001 * 120.14182 * 359.44599 * 7 6 5 9 9 C 1.50694 * 120.07365 * 180.29718 * 8 7 6 10 10 C 1.50702 * 109.47036 * 265.00332 * 9 8 7 11 11 O 1.21282 * 120.00235 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99965 * 180.02562 * 10 9 8 13 13 C 1.39467 * 120.00071 * 180.02562 * 12 10 9 14 14 C 1.36104 * 126.21694 * 359.68794 * 13 12 10 15 15 C 1.39750 * 107.83211 * 179.84950 * 14 13 12 16 16 C 1.50701 * 125.84323 * 180.14930 * 15 14 13 17 17 N 1.30855 * 108.32405 * 0.42098 * 15 14 13 18 18 N 1.35258 * 126.21722 * 180.02562 * 13 12 10 19 19 C 1.46498 * 126.04518 * 359.96419 * 18 13 12 20 20 C 1.50698 * 109.47266 * 90.00199 * 19 18 13 21 21 H 1.07997 * 120.00127 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99868 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00070 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46858 * 59.99940 * 24 22 20 26 26 H 1.48495 * 109.46777 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46746 * 299.99874 * 24 22 20 28 28 H 4.52091 * 14.02176 * 359.97438 * 4 2 1 29 29 H 1.07996 * 120.07253 * 359.95673 * 4 3 2 30 30 H 1.08001 * 119.92264 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.85902 * 180.27965 * 6 5 4 32 32 H 1.08002 * 119.93308 * 179.72790 * 7 6 5 33 33 H 1.08997 * 109.47196 * 25.00481 * 9 8 7 34 34 H 1.09000 * 109.47147 * 145.00427 * 9 8 7 35 35 H 0.97001 * 119.99509 * 359.97438 * 12 10 9 36 36 H 1.08004 * 126.08617 * 359.97438 * 14 13 12 37 37 H 1.09000 * 109.46853 * 270.29048 * 16 15 14 38 38 H 1.08999 * 109.47417 * 30.29333 * 16 15 14 39 39 H 1.09007 * 109.47477 * 150.29506 * 16 15 14 40 40 H 1.09006 * 109.47479 * 209.99988 * 19 18 13 41 41 H 1.08998 * 109.47120 * 329.99690 * 19 18 13 42 42 H 0.97001 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3073 -0.9856 0.6952 5 6 4.6867 -0.9795 0.6907 6 6 5.3751 -0.0019 -0.0056 7 6 4.6860 0.9817 -0.6919 8 6 3.3060 0.9870 -0.6955 9 6 2.5569 2.0554 -1.4493 10 6 2.1999 3.1773 -0.5085 11 8 2.5217 3.1151 0.6592 12 7 1.5222 4.2493 -0.9646 13 6 1.1923 5.2878 -0.0941 14 6 1.4845 5.3475 1.2339 15 6 0.9802 6.5530 1.7293 16 6 1.0818 7.0329 3.1542 17 7 0.3994 7.1912 0.7456 18 7 0.5182 6.4157 -0.4148 19 6 0.0042 6.7651 -1.7414 20 6 -1.3997 6.2380 -1.8910 21 1 -1.8626 5.6966 -1.0793 22 6 -2.0928 6.4462 -3.0647 23 7 -1.5289 7.1050 -4.0533 24 14 -3.8328 5.7922 -3.2503 25 1 -4.7021 6.3956 -2.2085 26 1 -4.3533 6.1454 -4.5955 27 1 -3.8257 4.3154 -3.0949 28 1 -1.0500 -0.0005 0.0009 29 1 2.7712 -1.7516 1.2357 30 1 5.2306 -1.7424 1.2280 31 1 6.4551 -0.0043 -0.0097 32 1 5.2291 1.7446 -1.2299 33 1 3.1843 2.4408 -2.2529 34 1 1.6458 1.6313 -1.8712 35 1 1.2645 4.2988 -1.8984 36 1 2.0139 4.5977 1.8031 37 1 0.2181 6.6813 3.7185 38 1 1.9940 6.6421 3.6051 39 1 1.1069 8.1226 3.1698 40 1 -0.0007 7.8491 -1.8554 41 1 0.6420 6.3222 -2.5063 42 1 -2.0164 7.2511 -4.8791 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810324172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:04 Heat of formation + Delta-G solvation = 117.117983 kcal Electronic energy + Delta-G solvation = -26007.823721 eV Core-core repulsion = 22341.983663 eV Total energy + Delta-G solvation = -3665.840057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88762 -39.89608 -38.65430 -34.69152 -34.02982 -33.74361 -32.85171 -32.04935 -30.34041 -29.29407 -28.68859 -27.25315 -26.02117 -23.46777 -23.00828 -22.40781 -21.02876 -19.70116 -19.29200 -18.77896 -17.00163 -16.69476 -16.52893 -16.20698 -15.95833 -15.33917 -14.90116 -14.87753 -14.37554 -14.00931 -13.90774 -13.82227 -13.36392 -12.98295 -12.79676 -12.75269 -12.49534 -12.36215 -11.96861 -11.78391 -11.61445 -11.56255 -11.41144 -11.22622 -11.09517 -10.88281 -10.48271 -10.37337 -10.31965 -9.91952 -9.83312 -9.48054 -8.97854 -8.72763 -8.57870 -7.90005 -7.41209 -6.34166 -4.42659 0.82054 1.18718 2.29993 2.70853 2.84381 2.98146 3.14041 3.16994 3.21824 3.26536 3.63116 3.76936 3.94789 4.20723 4.23805 4.46000 4.66967 4.85527 4.86299 4.99145 5.05047 5.25789 5.29132 5.38371 5.45539 5.54620 5.65619 5.83311 5.97582 6.04989 6.17423 6.21316 6.24883 6.29919 6.31003 6.38068 6.45670 6.69083 6.77451 6.84228 7.04814 7.49664 7.53594 7.58728 7.65167 7.79443 7.93949 8.34308 8.62431 8.71864 9.24829 10.72936 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003731 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.386923 B = 7503.028949 C = 8825.253026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.153 4.153 3 C 0.029 3.971 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.104 4.104 8 C -0.041 4.041 9 C -0.102 4.102 10 C 0.522 3.478 11 O -0.505 6.505 12 N -0.641 5.641 13 C 0.303 3.697 14 C -0.296 4.296 15 C 0.050 3.950 16 C -0.062 4.062 17 N -0.287 5.287 18 N -0.345 5.345 19 C 0.257 3.743 20 C -0.541 4.541 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.224 0.776 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.416 0.584 36 H 0.160 0.840 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.352 -14.698 5.069 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C 0.029 3.971 4 C -0.115 4.115 5 C -0.138 4.138 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.042 4.042 9 C -0.142 4.142 10 C 0.309 3.691 11 O -0.378 6.378 12 N -0.288 5.288 13 C 0.081 3.919 14 C -0.328 4.328 15 C -0.115 4.115 16 C -0.121 4.121 17 N -0.112 5.112 18 N -0.131 5.131 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.082 0.918 22 C -0.136 4.136 23 N -0.528 5.528 24 Si 0.733 3.267 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.240 0.760 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.252 0.748 36 H 0.178 0.822 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.895 -13.626 5.193 18.203 hybrid contribution -1.034 -0.927 -0.700 1.555 sum 9.862 -14.553 4.493 18.145 Atomic orbital electron populations 1.24953 0.95841 0.99026 0.98594 1.19929 0.91998 1.01581 1.01828 1.15772 0.86533 0.96034 0.98734 1.21142 0.94218 0.97798 0.98388 1.21048 0.93827 0.99206 0.99686 1.21194 1.00025 0.94665 0.97034 1.20943 0.92857 0.98678 0.99758 1.19283 0.93394 0.94206 0.97296 1.20656 1.02678 0.93041 0.97815 1.20357 0.77591 0.82021 0.89176 1.90652 1.51755 1.78027 1.17325 1.42801 1.55565 1.17519 1.12964 1.17926 0.97996 0.85260 0.90735 1.21258 1.17030 1.02226 0.92261 1.22023 0.98947 0.94445 0.96037 1.20015 1.02008 1.01004 0.89033 1.77350 1.24216 1.18452 0.91173 1.49337 1.41449 1.12167 1.10100 1.19602 0.94720 0.98983 0.72755 1.21307 0.98510 1.37277 1.00826 0.91787 1.24931 0.98811 0.94689 0.95208 1.69903 1.38078 1.39672 1.05130 0.86413 0.83487 0.79360 0.77448 1.19856 1.20883 1.19986 0.75969 0.85668 0.85630 0.85680 0.85462 0.87166 0.87292 0.74763 0.82225 0.91357 0.91189 0.91569 0.92587 0.93852 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 19.25 29.55 0.57 -1.51 16 2 C -0.15 -2.10 11.80 -38.83 -0.46 -2.56 16 3 C 0.03 0.38 5.72 -107.00 -0.61 -0.23 16 4 C -0.10 -1.07 9.75 -39.20 -0.38 -1.45 16 5 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 6 C -0.11 -1.03 10.04 -39.50 -0.40 -1.43 16 7 C -0.10 -1.11 9.67 -39.64 -0.38 -1.49 16 8 C -0.04 -0.51 4.41 -104.23 -0.46 -0.97 16 9 C -0.10 -1.22 5.35 -29.04 -0.16 -1.38 16 10 C 0.52 8.46 7.79 -10.98 -0.09 8.37 16 11 O -0.50 -9.57 13.16 5.56 0.07 -9.50 16 12 N -0.64 -11.39 5.42 -11.47 -0.06 -11.45 16 13 C 0.30 6.52 7.66 -153.17 -1.17 5.35 16 14 C -0.30 -6.25 9.58 -39.78 -0.38 -6.63 16 15 C 0.05 1.04 7.21 -82.44 -0.59 0.44 16 16 C -0.06 -0.95 10.44 36.01 0.38 -0.58 16 17 N -0.29 -6.80 12.57 33.65 0.42 -6.38 16 18 N -0.35 -8.20 3.60 -61.58 -0.22 -8.42 16 19 C 0.26 6.45 6.01 -5.20 -0.03 6.42 16 20 C -0.54 -14.55 9.39 -34.44 -0.32 -14.88 16 21 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.26 13.29 55.43 0.74 -23.53 16 24 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.22 2.06 7.80 -54.09 -0.42 1.64 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.11 1.23 7.28 -51.93 -0.38 0.86 16 35 H 0.42 6.74 7.96 -40.82 -0.33 6.42 16 36 H 0.16 3.33 5.83 -52.48 -0.31 3.02 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -33.25 373.78 -8.59 -41.84 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.17 Total: 8.54 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -4.99 Total: -12.34 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.88 Total: -49.77 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.25 -8.59 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810324172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.957 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds