Wall clock time and date at job start Tue Mar 31 2020 15:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39558 * 120.14266 * 324.82717 * 3 2 1 5 5 C 1.37947 * 119.85218 * 179.97438 * 4 3 2 6 6 C 1.38363 * 120.14679 * 359.72764 * 5 4 3 7 7 C 1.38324 * 120.28460 * 0.55089 * 6 5 4 8 8 C 1.38001 * 120.14182 * 359.44599 * 7 6 5 9 9 C 1.50694 * 120.07365 * 180.29718 * 8 7 6 10 10 C 1.50702 * 109.47036 * 265.00332 * 9 8 7 11 11 O 1.21282 * 120.00235 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99965 * 180.02562 * 10 9 8 13 13 C 1.39467 * 120.00071 * 180.02562 * 12 10 9 14 14 C 1.36104 * 126.21694 * 359.68794 * 13 12 10 15 15 C 1.39750 * 107.83211 * 179.84950 * 14 13 12 16 16 C 1.50701 * 125.84323 * 180.14930 * 15 14 13 17 17 N 1.30855 * 108.32405 * 0.42098 * 15 14 13 18 18 N 1.35258 * 126.21722 * 180.02562 * 13 12 10 19 19 C 1.46498 * 126.04518 * 359.96419 * 18 13 12 20 20 C 1.50698 * 109.47266 * 90.00199 * 19 18 13 21 21 H 1.07997 * 120.00127 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99868 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00070 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99727 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46858 * 59.99940 * 24 22 20 26 26 H 1.48495 * 109.46777 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46746 * 299.99874 * 24 22 20 28 28 H 4.52091 * 14.02176 * 359.97438 * 4 2 1 29 29 H 1.07996 * 120.07253 * 359.95673 * 4 3 2 30 30 H 1.08001 * 119.92264 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.85902 * 180.27965 * 6 5 4 32 32 H 1.08002 * 119.93308 * 179.72790 * 7 6 5 33 33 H 1.08997 * 109.47196 * 25.00481 * 9 8 7 34 34 H 1.09000 * 109.47147 * 145.00427 * 9 8 7 35 35 H 0.97001 * 119.99509 * 359.97438 * 12 10 9 36 36 H 1.08004 * 126.08617 * 359.97438 * 14 13 12 37 37 H 1.09000 * 109.46853 * 270.29048 * 16 15 14 38 38 H 1.08999 * 109.47417 * 30.29333 * 16 15 14 39 39 H 1.09007 * 109.47477 * 150.29506 * 16 15 14 40 40 H 1.09006 * 109.47479 * 209.99988 * 19 18 13 41 41 H 1.08998 * 109.47120 * 329.99690 * 19 18 13 42 42 H 0.97001 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3073 -0.9856 0.6952 5 6 4.6867 -0.9795 0.6907 6 6 5.3751 -0.0019 -0.0056 7 6 4.6860 0.9817 -0.6919 8 6 3.3060 0.9870 -0.6955 9 6 2.5569 2.0554 -1.4493 10 6 2.1999 3.1773 -0.5085 11 8 2.5217 3.1151 0.6592 12 7 1.5222 4.2493 -0.9646 13 6 1.1923 5.2878 -0.0941 14 6 1.4845 5.3475 1.2339 15 6 0.9802 6.5530 1.7293 16 6 1.0818 7.0329 3.1542 17 7 0.3994 7.1912 0.7456 18 7 0.5182 6.4157 -0.4148 19 6 0.0042 6.7651 -1.7414 20 6 -1.3997 6.2380 -1.8910 21 1 -1.8626 5.6966 -1.0793 22 6 -2.0928 6.4462 -3.0647 23 7 -1.5289 7.1050 -4.0533 24 14 -3.8328 5.7922 -3.2503 25 1 -4.7021 6.3956 -2.2085 26 1 -4.3533 6.1454 -4.5955 27 1 -3.8257 4.3154 -3.0949 28 1 -1.0500 -0.0005 0.0009 29 1 2.7712 -1.7516 1.2357 30 1 5.2306 -1.7424 1.2280 31 1 6.4551 -0.0043 -0.0097 32 1 5.2291 1.7446 -1.2299 33 1 3.1843 2.4408 -2.2529 34 1 1.6458 1.6313 -1.8712 35 1 1.2645 4.2988 -1.8984 36 1 2.0139 4.5977 1.8031 37 1 0.2181 6.6813 3.7185 38 1 1.9940 6.6421 3.6051 39 1 1.1069 8.1226 3.1698 40 1 -0.0007 7.8491 -1.8554 41 1 0.6420 6.3222 -2.5063 42 1 -2.0164 7.2511 -4.8791 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810324172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:03 Heat of formation + Delta-G solvation = 98.981409 kcal Electronic energy + Delta-G solvation = -26008.610181 eV Core-core repulsion = 22341.983663 eV Total energy + Delta-G solvation = -3666.626518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45226 -41.03661 -39.78085 -36.26766 -35.59156 -34.90643 -33.88253 -33.72645 -31.18249 -30.85644 -30.13918 -28.44167 -27.81323 -24.82715 -24.27048 -23.61459 -22.19776 -21.25404 -20.74406 -19.67106 -18.89620 -18.39213 -17.83309 -17.17147 -17.03345 -16.67157 -16.27570 -16.13061 -15.93081 -15.46320 -15.30061 -14.60278 -14.56531 -14.42850 -14.17828 -14.05120 -13.79660 -13.66479 -13.39919 -13.21088 -13.12072 -12.89440 -12.71201 -12.42806 -12.29766 -12.18076 -12.11739 -11.93493 -11.70584 -11.49363 -11.39426 -10.95668 -10.77084 -9.78644 -9.64640 -9.41696 -9.07652 -8.37349 -6.54960 -0.01789 0.38804 0.78997 1.34730 1.37100 1.39336 1.47963 1.63150 1.74034 2.04847 2.07743 2.20795 2.35134 2.93093 3.00471 3.35060 3.53238 3.74542 3.82259 3.88035 4.16667 4.24818 4.30483 4.43227 4.55467 4.61476 4.66648 4.71290 4.73461 4.82531 4.87071 4.88945 4.94398 5.07120 5.18218 5.19996 5.22963 5.49013 5.49711 5.54990 5.56576 5.75858 5.94822 6.02295 6.14536 6.28018 6.54581 6.55820 6.95515 7.02695 7.17128 8.68969 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.003731 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.386923 B = 7503.028949 C = 8825.253026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.181 4.181 3 C -0.001 4.001 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.062 4.062 9 C -0.093 4.093 10 C 0.524 3.476 11 O -0.531 6.531 12 N -0.640 5.640 13 C 0.302 3.698 14 C -0.309 4.309 15 C 0.058 3.942 16 C -0.060 4.060 17 N -0.332 5.332 18 N -0.367 5.367 19 C 0.273 3.727 20 C -0.558 4.558 21 H 0.046 0.954 22 C 0.029 3.971 23 N -0.913 5.913 24 Si 0.968 3.032 25 H -0.278 1.278 26 H -0.271 1.271 27 H -0.264 1.264 28 H 0.246 0.754 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.422 0.578 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.049 0.951 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.194 -16.256 5.322 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.181 4.181 3 C -0.001 4.001 4 C -0.128 4.128 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.062 4.062 9 C -0.132 4.132 10 C 0.313 3.687 11 O -0.406 6.406 12 N -0.288 5.288 13 C 0.080 3.920 14 C -0.341 4.341 15 C -0.107 4.107 16 C -0.119 4.119 17 N -0.157 5.157 18 N -0.152 5.152 19 C 0.154 3.846 20 C -0.596 4.596 21 H 0.064 0.936 22 C -0.173 4.173 23 N -0.551 5.551 24 Si 0.791 3.209 25 H -0.204 1.204 26 H -0.196 1.196 27 H -0.189 1.189 28 H 0.263 0.737 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.259 0.741 36 H 0.182 0.818 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.755 -15.203 5.435 19.971 hybrid contribution -1.191 -0.497 -0.699 1.468 sum 10.564 -15.700 4.737 19.507 Atomic orbital electron populations 1.25647 0.96672 0.98535 0.98204 1.20497 0.92899 1.02220 1.02437 1.16094 0.86513 0.97363 1.00114 1.21400 0.95256 0.97727 0.98373 1.21442 0.93250 0.99660 0.99112 1.21608 1.01598 0.93770 0.95811 1.21265 0.92324 0.99516 0.99962 1.19414 0.94283 0.94361 0.98178 1.20706 1.03627 0.91395 0.97517 1.21185 0.76154 0.81920 0.89481 1.90621 1.52664 1.78472 1.18840 1.43018 1.55801 1.17140 1.12886 1.18311 0.96837 0.85246 0.91648 1.21435 1.17689 1.02694 0.92280 1.22870 0.96539 0.93712 0.97548 1.20219 1.03948 1.01798 0.85918 1.77300 1.26527 1.19967 0.91883 1.49160 1.42946 1.13322 1.09772 1.19222 0.94376 0.96990 0.74013 1.21372 0.99563 1.37877 1.00752 0.93550 1.25671 1.02427 0.94565 0.94631 1.69976 1.39568 1.40003 1.05539 0.85462 0.78604 0.79196 0.77591 1.20393 1.19606 1.18872 0.73736 0.84763 0.82684 0.82712 0.83731 0.83913 0.86770 0.74084 0.81844 0.89772 0.88701 0.90532 0.95527 0.93322 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 19.25 74.32 1.43 -2.89 16 2 C -0.18 -4.97 11.80 30.02 0.35 -4.62 16 3 C 0.00 -0.02 5.72 -21.40 -0.12 -0.14 16 4 C -0.11 -2.29 9.75 22.52 0.22 -2.07 16 5 C -0.12 -1.89 10.03 22.23 0.22 -1.66 16 6 C -0.11 -1.74 10.04 22.32 0.22 -1.51 16 7 C -0.11 -2.16 9.67 22.23 0.21 -1.95 16 8 C -0.06 -1.47 4.41 -19.61 -0.09 -1.56 16 9 C -0.09 -2.15 5.35 29.10 0.16 -1.99 16 10 C 0.52 16.81 7.79 87.66 0.68 17.49 16 11 O -0.53 -20.11 13.16 -3.04 -0.04 -20.15 16 12 N -0.64 -22.89 5.42 -308.57 -1.67 -24.56 16 13 C 0.30 13.21 7.66 131.32 1.01 14.21 16 14 C -0.31 -13.11 9.58 22.14 0.21 -12.89 16 15 C 0.06 2.41 7.21 43.07 0.31 2.72 16 16 C -0.06 -1.76 10.44 71.24 0.74 -1.01 16 17 N -0.33 -16.09 12.57 -47.45 -0.60 -16.68 16 18 N -0.37 -17.92 3.60 -348.73 -1.26 -19.18 16 19 C 0.27 14.17 6.01 85.63 0.51 14.69 16 20 C -0.56 -30.66 9.39 25.60 0.24 -30.42 16 21 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 22 C 0.03 1.54 5.46 84.66 0.46 2.00 16 23 N -0.91 -49.94 13.29 21.45 0.28 -49.66 16 24 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 28 H 0.25 4.38 7.80 -4.42 -0.03 4.35 16 29 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.14 2.28 8.05 -2.39 -0.02 2.26 16 34 H 0.11 2.52 7.28 -2.39 -0.02 2.50 16 35 H 0.42 13.79 7.96 -92.71 -0.74 13.05 16 36 H 0.16 6.80 5.83 -2.91 -0.02 6.78 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.05 2.42 7.50 -2.39 -0.02 2.41 16 42 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -73.24 373.78 5.84 -67.39 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.31 Total: 30.42 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 6.78 Total: -11.61 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -3.24 Total: -110.08 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.04 Total: -20.15 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -73.24 5.84 -67.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810324172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.375 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds