Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85442 * 180.02562 * 4 3 2 6 6 C 1.38372 * 120.14566 * 0.02562 * 5 4 3 7 7 C 1.38321 * 120.28234 * 359.97438 * 6 5 4 8 8 C 1.37992 * 120.14671 * 359.71871 * 7 6 5 9 9 C 1.50703 * 120.07918 * 180.30348 * 8 7 6 10 10 C 1.50702 * 109.46638 * 265.28229 * 9 8 7 11 11 O 1.21289 * 120.00208 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99498 * 179.97438 * 10 9 8 13 13 C 1.40163 * 120.00038 * 179.97438 * 12 10 9 14 14 C 1.40410 * 125.96983 * 359.71495 * 13 12 10 15 15 C 1.35234 * 107.86301 * 179.82847 * 14 13 12 16 16 C 1.50704 * 126.06691 * 180.13922 * 15 14 13 17 17 N 1.34971 * 107.86428 * 0.42958 * 15 14 13 18 18 C 1.46504 * 125.97420 * 179.69396 * 17 15 14 19 19 C 1.50700 * 109.46734 * 270.01664 * 18 17 15 20 20 H 1.08001 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99854 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99753 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47277 * 60.00034 * 23 21 19 25 25 H 1.48501 * 109.47321 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47653 * 300.00193 * 23 21 19 27 27 N 1.31219 * 125.97414 * 180.02562 * 13 12 10 28 28 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 29 29 H 1.07995 * 120.07089 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.93016 * 179.97438 * 5 4 3 31 31 H 1.07992 * 119.85730 * 179.97438 * 6 5 4 32 32 H 1.08005 * 119.93079 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46890 * 25.28157 * 9 8 7 34 34 H 1.08994 * 109.47013 * 145.27975 * 9 8 7 35 35 H 0.97006 * 120.00367 * 359.97438 * 12 10 9 36 36 H 1.07992 * 126.06634 * 0.02562 * 14 13 12 37 37 H 1.08996 * 109.47281 * 270.34244 * 16 15 14 38 38 H 1.08997 * 109.46925 * 30.34447 * 16 15 14 39 39 H 1.08997 * 109.47107 * 150.34652 * 16 15 14 40 40 H 1.08997 * 109.47303 * 30.01910 * 18 17 15 41 41 H 1.09001 * 109.46925 * 150.02319 * 18 17 15 42 42 H 0.97000 * 119.99754 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0621 -1.1984 6 6 5.3751 0.0003 0.0000 7 6 4.6864 -0.0611 1.1981 8 6 3.3066 -0.0551 1.2053 9 6 2.5579 -0.1151 2.5118 10 6 2.2005 -1.5462 2.8206 11 8 2.5217 -2.4303 2.0549 12 7 1.5239 -1.8436 3.9477 13 6 1.1910 -3.1745 4.2347 14 6 1.4931 -4.2905 3.4379 15 6 1.0070 -5.3883 4.0601 16 6 1.1071 -6.8074 3.5628 17 7 0.4106 -4.9868 5.2024 18 6 -0.2541 -5.8551 6.1774 19 6 -1.7101 -5.9952 5.8148 20 1 -2.1013 -5.4880 4.9452 21 6 -2.5430 -6.7702 6.5936 22 7 -2.0669 -7.3868 7.6533 23 14 -4.3479 -6.9434 6.1445 24 1 -4.4659 -7.5399 4.7897 25 1 -5.0217 -7.8236 7.1327 26 1 -4.9910 -5.6049 6.1536 27 7 0.5376 -3.5948 5.2922 28 1 -1.0500 0.0005 0.0001 29 1 2.7702 0.1094 -2.1414 30 1 5.2297 0.1094 -2.1305 31 1 6.4550 -0.0001 -0.0001 32 1 5.2299 -0.1087 2.1302 33 1 3.1858 0.2827 3.3090 34 1 1.6470 0.4787 2.4362 35 1 1.2674 -1.1366 4.5603 36 1 2.0227 -4.2751 2.4968 37 1 0.2429 -7.0357 2.9391 38 1 2.0189 -6.9236 2.9770 39 1 1.1319 -7.4894 4.4128 40 1 0.2183 -6.8374 6.1707 41 1 -0.1679 -5.4173 7.1719 42 1 -2.6528 -7.9323 8.2011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810833674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = 118.695833 kcal Electronic energy + Delta-G solvation = -25495.133394 eV Core-core repulsion = 21829.361757 eV Total energy + Delta-G solvation = -3665.771636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78881 -39.98411 -38.75678 -34.81931 -34.10503 -33.40084 -32.89172 -31.42509 -30.83316 -30.39669 -28.18709 -26.51517 -26.29775 -23.57371 -23.23248 -22.31440 -21.01949 -19.77352 -19.26885 -18.83516 -16.77414 -16.64101 -16.57291 -16.08023 -16.02867 -15.47662 -15.13423 -14.90307 -14.35572 -14.06153 -13.97743 -13.89159 -13.46164 -13.05259 -12.90046 -12.52702 -12.47201 -12.27789 -12.06477 -11.69771 -11.66180 -11.48159 -11.39775 -11.30341 -11.09776 -10.81546 -10.57165 -10.45065 -10.23886 -9.93167 -9.58899 -9.53796 -9.04003 -8.65168 -8.64005 -7.92745 -7.44498 -6.25699 -4.33323 0.74942 1.12229 2.35438 2.61442 2.78304 2.89593 2.94377 3.22898 3.26676 3.31056 3.72882 3.74662 3.96266 4.12711 4.30273 4.37445 4.59389 4.79834 4.81519 4.97034 5.07960 5.16286 5.20238 5.37752 5.44353 5.47836 5.71718 5.76501 5.89992 5.93166 6.11503 6.18591 6.24467 6.26538 6.30355 6.45156 6.56563 6.69487 6.74547 6.93611 7.05404 7.40383 7.46586 7.65799 7.67915 7.88819 8.05771 8.28978 8.65843 8.74902 9.32838 10.81561 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.002569 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.164484 B =10895.644641 C =11341.666061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.150 4.150 3 C 0.028 3.972 4 C -0.097 4.097 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.104 4.104 8 C -0.043 4.043 9 C -0.101 4.101 10 C 0.521 3.479 11 O -0.505 6.505 12 N -0.633 5.633 13 C 0.264 3.736 14 C -0.290 4.290 15 C 0.091 3.909 16 C -0.084 4.084 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.275 1.275 27 N -0.321 5.321 28 H 0.224 0.776 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.410 0.590 36 H 0.158 0.842 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.318 15.492 -13.984 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.150 4.150 3 C 0.028 3.972 4 C -0.115 4.115 5 C -0.137 4.137 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.043 4.043 9 C -0.141 4.141 10 C 0.306 3.694 11 O -0.377 6.377 12 N -0.281 5.281 13 C 0.012 3.988 14 C -0.321 4.321 15 C -0.041 4.041 16 C -0.142 4.142 17 N -0.100 5.100 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.152 5.152 28 H 0.240 0.760 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.245 0.755 36 H 0.176 0.824 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.892 15.004 -13.208 23.259 hybrid contribution -1.096 -0.007 -0.426 1.176 sum 10.796 14.997 -13.634 22.964 Atomic orbital electron populations 1.24933 0.95824 0.99004 0.99001 1.19937 0.91998 1.01559 1.01537 1.15773 0.86528 1.01729 0.93205 1.21149 0.94238 0.99310 0.96803 1.21061 0.93830 1.00493 0.98327 1.21206 1.00071 0.99296 0.92281 1.20935 0.92868 0.99727 0.98701 1.19279 0.93406 0.99099 0.92527 1.20651 1.02444 0.94410 0.96585 1.20384 0.77712 0.90963 0.80313 1.90671 1.51616 1.48370 1.47088 1.42490 1.56130 1.05733 1.23709 1.18994 0.99756 0.84897 0.95193 1.21237 1.16435 0.89047 1.05364 1.21062 0.97061 0.97024 0.88905 1.20330 1.02505 0.89871 1.01498 1.48984 1.40425 1.03000 1.17542 1.19678 0.92236 0.87294 0.86656 1.21280 0.92843 1.30766 1.12563 0.91842 1.24926 0.99415 0.94892 0.94539 1.69913 1.36503 1.31014 1.15566 0.86411 0.83636 0.78276 0.78337 1.19934 1.20938 1.19994 1.77251 1.24679 0.91873 1.21384 0.75972 0.85645 0.85588 0.85648 0.85475 0.87313 0.87553 0.75529 0.82418 0.90446 0.90847 0.90854 0.92815 0.93027 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.15 -1.87 11.80 -38.84 -0.46 -2.32 16 3 C 0.03 0.33 5.72 -107.00 -0.61 -0.28 16 4 C -0.10 -0.99 9.75 -39.20 -0.38 -1.37 16 5 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 6 C -0.11 -0.94 10.04 -39.50 -0.40 -1.34 16 7 C -0.10 -1.01 9.67 -39.64 -0.38 -1.39 16 8 C -0.04 -0.48 4.41 -104.23 -0.46 -0.94 16 9 C -0.10 -1.02 5.34 -29.03 -0.16 -1.18 16 10 C 0.52 7.63 7.79 -10.99 -0.09 7.55 16 11 O -0.50 -9.19 13.16 5.55 0.07 -9.12 16 12 N -0.63 -9.87 5.45 -11.13 -0.06 -9.93 16 13 C 0.26 5.44 8.11 -154.38 -1.25 4.19 16 14 C -0.29 -6.10 9.52 -39.83 -0.38 -6.48 16 15 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 16 C -0.08 -1.47 10.11 36.01 0.36 -1.10 16 17 N -0.32 -7.62 3.59 -58.32 -0.21 -7.83 16 18 C 0.26 6.70 5.99 -5.19 -0.03 6.67 16 19 C -0.54 -14.86 9.39 -34.44 -0.32 -15.19 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 23 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 N -0.32 -7.49 12.59 31.44 0.40 -7.09 16 28 H 0.22 1.70 7.80 -54.09 -0.42 1.27 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.11 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.11 0.95 7.28 -51.93 -0.38 0.57 16 35 H 0.41 5.04 8.82 -40.82 -0.36 4.68 16 36 H 0.16 3.28 5.91 -52.49 -0.31 2.97 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.28 7.07 -51.93 -0.37 0.92 16 40 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 41 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -34.41 373.00 -8.64 -43.05 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.13 Total: 6.37 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -5.05 Total: -12.83 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.86 Total: -49.25 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.41 -8.64 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810833674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.744 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds