Wall clock time and date at job start Tue Mar 31 2020 15:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85442 * 180.02562 * 4 3 2 6 6 C 1.38372 * 120.14566 * 0.02562 * 5 4 3 7 7 C 1.38321 * 120.28234 * 359.97438 * 6 5 4 8 8 C 1.37992 * 120.14671 * 359.71871 * 7 6 5 9 9 C 1.50703 * 120.07918 * 180.30348 * 8 7 6 10 10 C 1.50702 * 109.46638 * 265.28229 * 9 8 7 11 11 O 1.21289 * 120.00208 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99498 * 179.97438 * 10 9 8 13 13 C 1.40163 * 120.00038 * 179.97438 * 12 10 9 14 14 C 1.40410 * 125.96983 * 359.71495 * 13 12 10 15 15 C 1.35234 * 107.86301 * 179.82847 * 14 13 12 16 16 C 1.50704 * 126.06691 * 180.13922 * 15 14 13 17 17 N 1.34971 * 107.86428 * 0.42958 * 15 14 13 18 18 C 1.46504 * 125.97420 * 179.69396 * 17 15 14 19 19 C 1.50700 * 109.46734 * 270.01664 * 18 17 15 20 20 H 1.08001 * 120.00406 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99854 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99753 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47277 * 60.00034 * 23 21 19 25 25 H 1.48501 * 109.47321 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47653 * 300.00193 * 23 21 19 27 27 N 1.31219 * 125.97414 * 180.02562 * 13 12 10 28 28 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 29 29 H 1.07995 * 120.07089 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.93016 * 179.97438 * 5 4 3 31 31 H 1.07992 * 119.85730 * 179.97438 * 6 5 4 32 32 H 1.08005 * 119.93079 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46890 * 25.28157 * 9 8 7 34 34 H 1.08994 * 109.47013 * 145.27975 * 9 8 7 35 35 H 0.97006 * 120.00367 * 359.97438 * 12 10 9 36 36 H 1.07992 * 126.06634 * 0.02562 * 14 13 12 37 37 H 1.08996 * 109.47281 * 270.34244 * 16 15 14 38 38 H 1.08997 * 109.46925 * 30.34447 * 16 15 14 39 39 H 1.08997 * 109.47107 * 150.34652 * 16 15 14 40 40 H 1.08997 * 109.47303 * 30.01910 * 18 17 15 41 41 H 1.09001 * 109.46925 * 150.02319 * 18 17 15 42 42 H 0.97000 * 119.99754 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0621 -1.1984 6 6 5.3751 0.0003 0.0000 7 6 4.6864 -0.0611 1.1981 8 6 3.3066 -0.0551 1.2053 9 6 2.5579 -0.1151 2.5118 10 6 2.2005 -1.5462 2.8206 11 8 2.5217 -2.4303 2.0549 12 7 1.5239 -1.8436 3.9477 13 6 1.1910 -3.1745 4.2347 14 6 1.4931 -4.2905 3.4379 15 6 1.0070 -5.3883 4.0601 16 6 1.1071 -6.8074 3.5628 17 7 0.4106 -4.9868 5.2024 18 6 -0.2541 -5.8551 6.1774 19 6 -1.7101 -5.9952 5.8148 20 1 -2.1013 -5.4880 4.9452 21 6 -2.5430 -6.7702 6.5936 22 7 -2.0669 -7.3868 7.6533 23 14 -4.3479 -6.9434 6.1445 24 1 -4.4659 -7.5399 4.7897 25 1 -5.0217 -7.8236 7.1327 26 1 -4.9910 -5.6049 6.1536 27 7 0.5376 -3.5948 5.2922 28 1 -1.0500 0.0005 0.0001 29 1 2.7702 0.1094 -2.1414 30 1 5.2297 0.1094 -2.1305 31 1 6.4550 -0.0001 -0.0001 32 1 5.2299 -0.1087 2.1302 33 1 3.1858 0.2827 3.3090 34 1 1.6470 0.4787 2.4362 35 1 1.2674 -1.1366 4.5603 36 1 2.0227 -4.2751 2.4968 37 1 0.2429 -7.0357 2.9391 38 1 2.0189 -6.9236 2.9770 39 1 1.1319 -7.4894 4.4128 40 1 0.2183 -6.8374 6.1707 41 1 -0.1679 -5.4173 7.1719 42 1 -2.6528 -7.9323 8.2011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810833674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:07 Heat of formation + Delta-G solvation = 99.348378 kcal Electronic energy + Delta-G solvation = -25495.972362 eV Core-core repulsion = 21829.361757 eV Total energy + Delta-G solvation = -3666.610605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32953 -41.06350 -39.78286 -36.33491 -35.30530 -34.88549 -33.80427 -32.96612 -32.61815 -31.14277 -29.28846 -28.20470 -27.88159 -25.09594 -24.23677 -23.48656 -22.12247 -21.27567 -20.73187 -19.65462 -18.81342 -17.94663 -17.73520 -17.27533 -16.96336 -16.92526 -16.30812 -16.10773 -15.98500 -15.51204 -15.20504 -14.74938 -14.58262 -14.34369 -14.10917 -13.84155 -13.78855 -13.73676 -13.56228 -13.21489 -13.05212 -12.86186 -12.67135 -12.41042 -12.25123 -12.16899 -12.12627 -12.07362 -11.56722 -11.38139 -11.36504 -10.93466 -10.74032 -9.77209 -9.60088 -9.40045 -9.15298 -8.33724 -6.51504 -0.00204 0.40027 0.90665 1.33874 1.38490 1.39488 1.43841 1.49248 1.76051 2.09633 2.19652 2.28704 2.40928 2.95960 3.03305 3.37598 3.56327 3.73009 3.90914 3.98506 4.15007 4.18117 4.32617 4.42288 4.47044 4.56620 4.68427 4.68942 4.75107 4.78967 4.87290 4.96416 4.99239 5.08521 5.13036 5.19706 5.24165 5.50179 5.52381 5.56030 5.57705 5.79868 5.93187 6.03481 6.24267 6.27814 6.56782 6.60369 6.98308 7.12894 7.19337 8.72138 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.002569 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.164484 B =10895.644641 C =11341.666061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.181 4.181 3 C -0.001 4.001 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.063 4.063 9 C -0.090 4.090 10 C 0.522 3.478 11 O -0.540 6.540 12 N -0.625 5.625 13 C 0.274 3.726 14 C -0.300 4.300 15 C 0.087 3.913 16 C -0.082 4.082 17 N -0.343 5.343 18 C 0.276 3.724 19 C -0.554 4.554 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.266 1.266 25 H -0.272 1.272 26 H -0.275 1.275 27 N -0.357 5.357 28 H 0.248 0.752 29 H 0.133 0.867 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.425 0.575 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.025 0.975 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.878 16.352 -15.177 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.181 4.181 3 C -0.001 4.001 4 C -0.130 4.130 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.131 4.131 8 C -0.063 4.063 9 C -0.129 4.129 10 C 0.310 3.690 11 O -0.415 6.415 12 N -0.275 5.275 13 C 0.020 3.980 14 C -0.330 4.330 15 C -0.044 4.044 16 C -0.140 4.140 17 N -0.125 5.125 18 C 0.157 3.843 19 C -0.592 4.592 20 H 0.067 0.933 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.794 3.206 24 H -0.191 1.191 25 H -0.197 1.197 26 H -0.200 1.200 27 N -0.188 5.188 28 H 0.265 0.735 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.137 0.863 35 H 0.263 0.737 36 H 0.180 0.820 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.469 15.897 -14.405 24.813 hybrid contribution -1.154 -0.199 -0.152 1.181 sum 11.315 15.697 -14.557 24.214 Atomic orbital electron populations 1.25662 0.96642 0.98416 0.98120 1.20464 0.92838 1.02349 1.02471 1.16103 0.86668 1.03032 0.94313 1.21396 0.95222 0.99628 0.96729 1.21426 0.93337 0.99189 0.99702 1.21604 1.01555 0.98012 0.91838 1.21270 0.92499 0.99199 1.00087 1.19467 0.94226 1.00136 0.92490 1.20700 1.03707 0.90957 0.97551 1.21275 0.76149 0.92545 0.78984 1.90644 1.52828 1.49961 1.48025 1.42671 1.56125 1.04152 1.24595 1.19348 0.97780 0.86979 0.93911 1.21394 1.16807 0.89259 1.05586 1.21726 0.95761 0.98944 0.87921 1.20463 1.04317 0.87480 1.01725 1.48788 1.42020 1.03349 1.18348 1.19243 0.91821 0.87279 0.85977 1.21398 0.94048 1.31298 1.12484 0.93315 1.25731 1.03639 0.94190 0.94227 1.69996 1.38145 1.31229 1.16201 0.85418 0.78280 0.78278 0.78598 1.19063 1.19663 1.20029 1.77176 1.26695 0.91821 1.23092 0.73534 0.84943 0.82961 0.82921 0.83642 0.83647 0.86293 0.73672 0.81976 0.89909 0.87692 0.91163 0.93040 0.95716 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 19.25 74.32 1.43 -2.24 16 2 C -0.18 -4.46 11.80 30.02 0.35 -4.10 16 3 C 0.00 -0.03 5.72 -21.40 -0.12 -0.15 16 4 C -0.11 -2.19 9.75 22.52 0.22 -1.97 16 5 C -0.12 -1.81 10.03 22.23 0.22 -1.58 16 6 C -0.11 -1.64 10.04 22.32 0.22 -1.42 16 7 C -0.11 -1.93 9.67 22.23 0.21 -1.72 16 8 C -0.06 -1.32 4.41 -19.61 -0.09 -1.40 16 9 C -0.09 -1.65 5.34 29.10 0.16 -1.50 16 10 C 0.52 14.72 7.79 87.66 0.68 15.41 16 11 O -0.54 -19.37 13.16 -3.06 -0.04 -19.41 16 12 N -0.63 -18.98 5.45 -307.51 -1.68 -20.66 16 13 C 0.27 11.31 8.11 133.32 1.08 12.39 16 14 C -0.30 -12.62 9.52 22.11 0.21 -12.41 16 15 C 0.09 3.76 6.92 41.38 0.29 4.04 16 16 C -0.08 -2.82 10.11 71.24 0.72 -2.10 16 17 N -0.34 -16.87 3.59 -338.44 -1.22 -18.09 16 18 C 0.28 14.74 5.99 85.63 0.51 15.25 16 19 C -0.55 -31.34 9.39 25.60 0.24 -31.10 16 20 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 21 C 0.02 1.28 5.46 84.65 0.46 1.74 16 22 N -0.92 -52.03 13.29 21.45 0.28 -51.75 16 23 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 N -0.36 -16.99 12.59 -54.44 -0.69 -17.67 16 28 H 0.25 3.47 7.80 -4.42 -0.03 3.43 16 29 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.15 1.57 8.05 -2.39 -0.02 1.55 16 34 H 0.12 1.91 7.28 -2.39 -0.02 1.89 16 35 H 0.43 9.96 8.82 -92.70 -0.82 9.15 16 36 H 0.16 6.70 5.91 -2.91 -0.02 6.68 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.07 2.45 7.07 -2.39 -0.02 2.43 16 40 H 0.05 2.73 7.04 -2.39 -0.02 2.71 16 41 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -75.82 373.00 5.74 -70.08 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.24 Total: 25.13 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 6.81 Total: -12.85 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.29 Total: -108.17 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.04 Total: -19.41 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.82 5.74 -70.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810833674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.427 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds