Wall clock time and date at job start Tue Mar 31 2020 14:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99848 * 2 1 4 4 H 1.48506 * 109.47350 * 274.26979 * 3 2 1 5 5 H 1.48493 * 109.47106 * 34.26964 * 3 2 1 6 6 H 1.48494 * 109.47234 * 154.27315 * 3 2 1 7 7 C 1.37874 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00258 * 180.29730 * 7 2 1 10 10 C 1.52997 * 115.55355 * 94.43670 * 9 7 2 11 11 N 1.46898 * 109.47068 * 304.99156 * 10 9 7 12 12 C 1.46903 * 110.99599 * 185.66461 * 11 10 9 13 13 C 1.50706 * 109.46846 * 184.24811 * 12 11 10 14 14 C 1.38260 * 119.94348 * 274.66886 * 13 12 11 15 15 C 1.38140 * 120.05714 * 179.72640 * 14 13 12 16 16 C 1.38736 * 119.94204 * 0.56750 * 15 14 13 17 17 O 1.35898 * 120.05619 * 179.68108 * 16 15 14 18 18 C 1.42896 * 117.00068 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.47337 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.46995 * 180.02562 * 19 18 17 21 21 Cl 1.80301 * 109.46826 * 180.02562 * 20 19 18 22 22 C 1.38735 * 119.88594 * 359.70906 * 16 15 14 23 23 C 1.38140 * 119.94578 * 359.97438 * 22 16 15 24 24 C 1.53003 * 117.49349 * 308.76705 * 9 7 2 25 25 C 1.53005 * 117.49721 * 240.11199 * 9 7 2 26 26 H 0.96998 * 120.00356 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.46640 * 64.98966 * 10 9 7 28 28 H 1.08998 * 109.46959 * 184.98393 * 10 9 7 29 29 H 1.00896 * 111.00291 * 61.70802 * 11 10 9 30 30 H 1.09005 * 109.46869 * 304.24144 * 12 11 10 31 31 H 1.09001 * 109.47410 * 64.24790 * 12 11 10 32 32 H 1.08004 * 119.97116 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.02913 * 180.25259 * 15 14 13 34 34 H 1.09001 * 109.47149 * 300.00054 * 18 17 16 35 35 H 1.09001 * 109.47144 * 59.99604 * 18 17 16 36 36 H 1.08995 * 109.46859 * 300.00296 * 19 18 17 37 37 H 1.09000 * 109.46587 * 59.99986 * 19 18 17 38 38 H 1.08995 * 109.46980 * 299.99469 * 20 19 18 39 39 H 1.08991 * 109.47324 * 60.00466 * 20 19 18 40 40 H 1.08001 * 120.02471 * 179.97438 * 22 16 15 41 41 H 1.08001 * 119.97274 * 180.02562 * 23 22 16 42 42 H 1.09000 * 117.50364 * 0.02562 * 24 9 7 43 43 H 1.09010 * 117.49635 * 145.02144 * 24 9 7 44 44 H 1.08997 * 117.50076 * 214.97603 * 25 9 7 45 45 H 1.08998 * 117.50210 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4063 2.0986 -1.3962 5 1 1.4946 2.6249 0.7883 6 1 3.5888 1.4158 0.6077 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0062 10 6 4.1653 -1.3050 1.3850 11 7 3.6561 -0.2371 2.2558 12 6 4.3597 -0.2290 3.5453 13 6 3.7421 0.8078 4.4480 14 6 4.1563 2.1247 4.3710 15 6 3.5877 3.0780 5.1933 16 6 2.6087 2.7110 6.1052 17 8 2.0525 3.6458 6.9198 18 6 2.5230 4.9881 6.7831 19 6 1.7858 5.8906 7.7746 20 6 2.2893 7.3278 7.6277 21 17 1.4211 8.3911 8.7967 22 6 2.1989 1.3879 6.1845 23 6 2.7660 0.4396 5.3553 24 6 4.2226 -0.3410 -1.0462 25 6 4.2232 -1.8667 -1.1693 26 1 -0.4850 0.8400 -0.0004 27 1 3.9280 -2.2748 1.8226 28 1 5.2461 -1.2068 1.2836 29 1 2.6595 -0.3227 2.3881 30 1 4.2770 -1.2113 4.0105 31 1 5.4110 0.0095 3.3841 32 1 4.9221 2.4090 3.6645 33 1 3.9087 4.1072 5.1300 34 1 3.5931 5.0206 6.9878 35 1 2.3368 5.3367 5.7672 36 1 0.7159 5.8579 7.5694 37 1 1.9718 5.5421 8.7905 38 1 3.3593 7.3607 7.8327 39 1 2.1030 7.6760 6.6118 40 1 1.4373 1.0996 6.8938 41 1 2.4470 -0.5905 5.4164 42 1 3.6005 0.2206 -1.7432 43 1 5.1565 0.1409 -0.7564 44 1 5.1574 -2.3881 -0.9605 45 1 3.6015 -2.3097 -1.9474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811501587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:19 Heat of formation + Delta-G solvation = -1.828080 kcal Electronic energy + Delta-G solvation = -24342.016317 eV Core-core repulsion = 20772.125865 eV Total energy + Delta-G solvation = -3569.890452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.21327 -38.12493 -37.19696 -36.59864 -34.54454 -33.70508 -31.99215 -30.95854 -30.26724 -27.06361 -26.09322 -25.07353 -23.17961 -23.14748 -21.70486 -21.52894 -20.83028 -18.82231 -18.28024 -16.75196 -16.36902 -16.22769 -15.63478 -15.04946 -14.84825 -14.66572 -14.65589 -14.06241 -14.04155 -13.82178 -13.40619 -13.34822 -13.24138 -12.95613 -12.48080 -12.36838 -12.00777 -11.82196 -11.81492 -11.57465 -11.07620 -11.00805 -10.95652 -10.91299 -10.81067 -10.71563 -10.50182 -10.23614 -9.87944 -9.38953 -8.96062 -8.90586 -8.53125 -8.43985 -8.05178 -7.40390 -6.01348 -4.08203 1.43331 1.50382 1.69872 3.00939 3.48127 3.59911 3.81998 3.88077 4.24284 4.37153 4.47171 4.65449 4.71342 4.79453 4.81253 4.83653 4.94709 4.97977 5.09850 5.29357 5.31577 5.42135 5.43197 5.48575 5.57431 5.69876 5.77586 5.86976 5.96790 6.12417 6.15069 6.24704 6.33370 6.40522 6.42173 6.53149 6.56154 6.79797 6.80576 6.81802 7.10217 7.18476 7.36185 7.79771 7.88671 8.18476 8.56090 8.98163 9.62650 11.08417 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.002467 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.948370 B =11348.102923 C =11994.279565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.299 1.299 5 H -0.306 1.306 6 H -0.207 1.207 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.009 3.991 10 C 0.102 3.898 11 N -0.672 5.672 12 C 0.098 3.902 13 C -0.109 4.109 14 C -0.058 4.058 15 C -0.210 4.210 16 C 0.121 3.879 17 O -0.315 6.315 18 C 0.061 3.939 19 C -0.131 4.131 20 C -0.030 4.030 21 Cl -0.178 7.178 22 C -0.150 4.150 23 C -0.072 4.072 24 C -0.194 4.194 25 C -0.187 4.187 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.357 0.643 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.781 10.764 16.262 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.121 4.121 3 Si 0.701 3.299 4 H -0.227 1.227 5 H -0.234 1.234 6 H -0.128 1.128 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.027 4.027 11 N -0.306 5.306 12 C -0.031 4.031 13 C -0.109 4.109 14 C -0.077 4.077 15 C -0.229 4.229 16 C 0.076 3.924 17 O -0.229 6.229 18 C -0.015 4.015 19 C -0.169 4.169 20 C -0.093 4.093 21 Cl -0.152 7.152 22 C -0.168 4.168 23 C -0.091 4.091 24 C -0.231 4.231 25 C -0.225 4.225 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.178 0.822 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.816 11.403 16.237 21.711 hybrid contribution -0.085 0.398 0.080 0.415 sum 8.730 11.801 16.316 21.948 Atomic orbital electron populations 1.69925 1.06762 1.27202 1.49965 1.25013 0.94507 0.99488 0.93135 0.86988 0.84146 0.82002 0.76776 1.22731 1.23389 1.12834 1.20236 0.86564 0.94252 1.52261 0.91011 1.19380 0.94738 0.98934 0.86197 1.21475 0.96387 0.91007 0.93833 1.60682 1.10375 1.48892 1.10633 1.20848 0.98121 0.94630 0.89473 1.19838 0.98400 0.95077 0.97626 1.20822 0.98486 0.92015 0.96332 1.21172 1.01036 1.00320 1.00376 1.18922 0.93420 0.89046 0.91013 1.86004 1.62145 1.16863 1.57903 1.22625 0.98379 0.80776 0.99728 1.21796 1.02273 0.91729 1.01065 1.24145 0.98800 0.91041 0.95282 1.98735 1.80808 1.70263 1.65388 1.20350 1.03331 0.90059 1.03110 1.20925 0.94823 0.99253 0.94102 1.22862 1.01534 0.93001 1.05666 1.22895 1.01100 0.94584 1.03960 0.92797 0.95913 0.93471 0.82230 0.95128 0.91079 0.85643 0.85885 0.91780 0.91628 0.89377 0.89499 0.88504 0.88398 0.85374 0.85349 0.90034 0.90890 0.91277 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.08 2.31 5.13 -17.82 -0.09 2.21 16 3 Si 0.87 21.93 23.18 -169.99 -3.94 17.99 16 4 H -0.30 -7.69 7.08 56.52 0.40 -7.29 16 5 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.21 -4.81 5.17 56.52 0.29 -4.52 16 7 C -0.50 -13.55 8.73 -34.44 -0.30 -13.85 16 8 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 9 C 0.01 0.20 1.37 -155.66 -0.21 -0.02 16 10 C 0.10 2.00 5.61 -3.83 -0.02 1.98 16 11 N -0.67 -12.99 3.86 -115.05 -0.44 -13.44 16 12 C 0.10 1.51 5.82 -4.97 -0.03 1.48 16 13 C -0.11 -1.64 5.35 -104.60 -0.56 -2.20 16 14 C -0.06 -0.83 9.71 -39.61 -0.38 -1.22 16 15 C -0.21 -2.76 9.04 -39.43 -0.36 -3.12 16 16 C 0.12 1.65 6.69 -39.21 -0.26 1.39 16 17 O -0.31 -3.86 10.14 -19.42 -0.20 -4.05 16 18 C 0.06 0.51 4.74 37.16 0.18 0.69 16 19 C -0.13 -0.89 5.71 -26.73 -0.15 -1.05 16 20 C -0.03 -0.16 6.66 37.16 0.25 0.09 16 21 Cl -0.18 -1.38 29.15 -51.86 -1.51 -2.89 16 22 C -0.15 -2.07 9.99 -39.43 -0.39 -2.47 16 23 C -0.07 -1.03 9.67 -39.61 -0.38 -1.41 16 24 C -0.19 -4.16 7.06 -26.69 -0.19 -4.35 16 25 C -0.19 -3.81 9.96 -26.69 -0.27 -4.08 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.36 7.74 7.23 -39.29 -0.28 7.46 16 30 H 0.03 0.44 8.04 -51.93 -0.42 0.02 16 31 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 34 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 35 H 0.07 0.53 7.66 -51.93 -0.40 0.14 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.08 1.89 6.31 -51.93 -0.33 1.57 16 43 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -31.15 375.94 -10.15 -41.30 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.32 Total: 8.00 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -3.18 Total: -25.91 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.33 Total: -40.09 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.20 Total: -4.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.94 Total: 17.99 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.51 Total: -2.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.15 -10.15 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811501587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.468 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds