Wall clock time and date at job start Tue Mar 31 2020 14:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99848 * 2 1 4 4 H 1.48506 * 109.47350 * 274.26979 * 3 2 1 5 5 H 1.48493 * 109.47106 * 34.26964 * 3 2 1 6 6 H 1.48494 * 109.47234 * 154.27315 * 3 2 1 7 7 C 1.37874 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00258 * 180.29730 * 7 2 1 10 10 C 1.52997 * 115.55355 * 94.43670 * 9 7 2 11 11 N 1.46898 * 109.47068 * 304.99156 * 10 9 7 12 12 C 1.46903 * 110.99599 * 185.66461 * 11 10 9 13 13 C 1.50706 * 109.46846 * 184.24811 * 12 11 10 14 14 C 1.38260 * 119.94348 * 274.66886 * 13 12 11 15 15 C 1.38140 * 120.05714 * 179.72640 * 14 13 12 16 16 C 1.38736 * 119.94204 * 0.56750 * 15 14 13 17 17 O 1.35898 * 120.05619 * 179.68108 * 16 15 14 18 18 C 1.42896 * 117.00068 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.47337 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.46995 * 180.02562 * 19 18 17 21 21 Cl 1.80301 * 109.46826 * 180.02562 * 20 19 18 22 22 C 1.38735 * 119.88594 * 359.70906 * 16 15 14 23 23 C 1.38140 * 119.94578 * 359.97438 * 22 16 15 24 24 C 1.53003 * 117.49349 * 308.76705 * 9 7 2 25 25 C 1.53005 * 117.49721 * 240.11199 * 9 7 2 26 26 H 0.96998 * 120.00356 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.46640 * 64.98966 * 10 9 7 28 28 H 1.08998 * 109.46959 * 184.98393 * 10 9 7 29 29 H 1.00896 * 111.00291 * 61.70802 * 11 10 9 30 30 H 1.09005 * 109.46869 * 304.24144 * 12 11 10 31 31 H 1.09001 * 109.47410 * 64.24790 * 12 11 10 32 32 H 1.08004 * 119.97116 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.02913 * 180.25259 * 15 14 13 34 34 H 1.09001 * 109.47149 * 300.00054 * 18 17 16 35 35 H 1.09001 * 109.47144 * 59.99604 * 18 17 16 36 36 H 1.08995 * 109.46859 * 300.00296 * 19 18 17 37 37 H 1.09000 * 109.46587 * 59.99986 * 19 18 17 38 38 H 1.08995 * 109.46980 * 299.99469 * 20 19 18 39 39 H 1.08991 * 109.47324 * 60.00466 * 20 19 18 40 40 H 1.08001 * 120.02471 * 179.97438 * 22 16 15 41 41 H 1.08001 * 119.97274 * 180.02562 * 23 22 16 42 42 H 1.09000 * 117.50364 * 0.02562 * 24 9 7 43 43 H 1.09010 * 117.49635 * 145.02144 * 24 9 7 44 44 H 1.08997 * 117.50076 * 214.97603 * 25 9 7 45 45 H 1.08998 * 117.50210 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4063 2.0986 -1.3962 5 1 1.4946 2.6249 0.7883 6 1 3.5888 1.4158 0.6077 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0062 10 6 4.1653 -1.3050 1.3850 11 7 3.6561 -0.2371 2.2558 12 6 4.3597 -0.2290 3.5453 13 6 3.7421 0.8078 4.4480 14 6 4.1563 2.1247 4.3710 15 6 3.5877 3.0780 5.1933 16 6 2.6087 2.7110 6.1052 17 8 2.0525 3.6458 6.9198 18 6 2.5230 4.9881 6.7831 19 6 1.7858 5.8906 7.7746 20 6 2.2893 7.3278 7.6277 21 17 1.4211 8.3911 8.7967 22 6 2.1989 1.3879 6.1845 23 6 2.7660 0.4396 5.3553 24 6 4.2226 -0.3410 -1.0462 25 6 4.2232 -1.8667 -1.1693 26 1 -0.4850 0.8400 -0.0004 27 1 3.9280 -2.2748 1.8226 28 1 5.2461 -1.2068 1.2836 29 1 2.6595 -0.3227 2.3881 30 1 4.2770 -1.2113 4.0105 31 1 5.4110 0.0095 3.3841 32 1 4.9221 2.4090 3.6645 33 1 3.9087 4.1072 5.1300 34 1 3.5931 5.0206 6.9878 35 1 2.3368 5.3367 5.7672 36 1 0.7159 5.8579 7.5694 37 1 1.9718 5.5421 8.7905 38 1 3.3593 7.3607 7.8327 39 1 2.1030 7.6760 6.6118 40 1 1.4373 1.0996 6.8938 41 1 2.4470 -0.5905 5.4164 42 1 3.6005 0.2206 -1.7432 43 1 5.1565 0.1409 -0.7564 44 1 5.1574 -2.3881 -0.9605 45 1 3.6015 -2.3097 -1.9474 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811501587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:18 Heat of formation + Delta-G solvation = -19.228992 kcal Electronic energy + Delta-G solvation = -24342.770877 eV Core-core repulsion = 20772.125865 eV Total energy + Delta-G solvation = -3570.645012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16006 -39.30072 -38.64175 -37.15445 -35.79811 -34.42365 -34.15663 -31.96836 -31.40512 -28.16223 -27.49798 -26.62666 -24.48700 -24.01064 -23.17950 -22.46086 -21.85476 -20.67511 -19.19990 -18.28201 -17.41333 -17.18375 -16.92228 -16.69991 -15.82024 -15.70126 -15.64055 -15.40992 -15.28862 -15.06757 -14.61982 -14.45944 -14.17130 -14.03459 -13.92413 -13.68062 -13.39481 -13.09537 -12.84764 -12.64481 -12.46382 -12.45024 -12.21837 -11.97781 -11.72526 -11.66529 -11.62879 -11.53254 -11.32333 -11.30792 -10.87277 -10.55149 -10.20732 -9.93672 -9.14261 -8.86106 -8.22211 -6.30832 0.40034 0.44717 1.20473 1.45716 1.54872 1.86864 2.23517 2.55608 2.75088 3.15765 3.25271 3.75831 3.76317 3.79037 3.83710 3.94098 4.00630 4.03356 4.21995 4.22336 4.27612 4.36854 4.45155 4.45867 4.48214 4.60262 4.62818 4.79910 4.83215 4.85236 4.87751 4.94152 4.94638 5.04583 5.12156 5.15817 5.30934 5.38587 5.42594 5.54730 5.73331 5.81299 5.82167 6.33438 6.41117 6.45322 6.57930 6.80739 7.42982 8.91232 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.002467 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.948370 B =11348.102923 C =11994.279565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.032 3.968 3 Si 0.933 3.067 4 H -0.307 1.307 5 H -0.322 1.322 6 H -0.171 1.171 7 C -0.487 4.487 8 H 0.025 0.975 9 C -0.019 4.019 10 C 0.111 3.889 11 N -0.685 5.685 12 C 0.103 3.897 13 C -0.127 4.127 14 C -0.068 4.068 15 C -0.212 4.212 16 C 0.116 3.884 17 O -0.329 6.329 18 C 0.053 3.947 19 C -0.125 4.125 20 C -0.023 4.023 21 Cl -0.200 7.200 22 C -0.166 4.166 23 C -0.082 4.082 24 C -0.190 4.190 25 C -0.171 4.171 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.078 0.922 29 H 0.338 0.662 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 11.948 16.785 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.166 4.166 3 Si 0.761 3.239 4 H -0.236 1.236 5 H -0.251 1.251 6 H -0.092 1.092 7 C -0.525 4.525 8 H 0.044 0.956 9 C -0.021 4.021 10 C -0.018 4.018 11 N -0.316 5.316 12 C -0.025 4.025 13 C -0.128 4.128 14 C -0.086 4.086 15 C -0.231 4.231 16 C 0.071 3.929 17 O -0.243 6.243 18 C -0.022 4.022 19 C -0.162 4.162 20 C -0.086 4.086 21 Cl -0.173 7.173 22 C -0.184 4.184 23 C -0.101 4.101 24 C -0.227 4.227 25 C -0.208 4.208 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.151 12.569 16.767 24.223 hybrid contribution -1.165 -0.055 -0.073 1.169 sum 10.986 12.513 16.694 23.579 Atomic orbital electron populations 1.70071 1.08682 1.27708 1.52871 1.25754 0.94888 1.02793 0.93148 0.86107 0.84316 0.77497 0.75976 1.23590 1.25127 1.09172 1.20420 0.89561 0.92132 1.50359 0.95645 1.19405 0.92071 1.01705 0.88873 1.21370 0.97608 0.91178 0.91682 1.60674 1.09361 1.48749 1.12864 1.20885 0.98490 0.95334 0.87823 1.19918 0.99139 0.95571 0.98134 1.21053 0.98866 0.91923 0.96771 1.21458 1.00473 1.01509 0.99638 1.19081 0.93411 0.89291 0.91166 1.85994 1.62463 1.18230 1.57643 1.22894 0.99683 0.79118 1.00481 1.21730 1.01544 0.92390 1.00575 1.24257 0.99490 0.89517 0.95295 1.98737 1.81412 1.70871 1.66316 1.20564 1.03775 0.90598 1.03480 1.21079 0.94930 0.99784 0.94297 1.22877 1.01977 0.93679 1.04148 1.22939 1.01910 0.94233 1.01763 0.93148 0.96144 0.90361 0.84397 0.94265 0.89203 0.84497 0.83265 0.89820 0.91088 0.90477 0.89690 0.86480 0.87171 0.84629 0.84823 0.92227 0.87858 0.87383 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 2 C 0.03 1.83 5.13 84.65 0.43 2.26 16 3 Si 0.93 45.65 23.18 68.60 1.59 47.24 16 4 H -0.31 -15.30 7.08 99.48 0.70 -14.59 16 5 H -0.32 -16.50 7.11 99.48 0.71 -15.80 16 6 H -0.17 -7.34 5.17 99.48 0.51 -6.83 16 7 C -0.49 -27.12 8.73 25.60 0.22 -26.90 16 8 H 0.03 1.60 8.06 -2.91 -0.02 1.58 16 9 C -0.02 -0.85 1.37 -52.93 -0.07 -0.92 16 10 C 0.11 4.00 5.61 86.30 0.48 4.49 16 11 N -0.68 -24.91 3.86 -517.91 -2.00 -26.90 16 12 C 0.10 2.89 5.82 85.56 0.50 3.39 16 13 C -0.13 -3.60 5.35 -19.85 -0.11 -3.70 16 14 C -0.07 -1.77 9.71 22.25 0.22 -1.55 16 15 C -0.21 -5.07 9.04 22.37 0.20 -4.87 16 16 C 0.12 3.00 6.69 22.51 0.15 3.15 16 17 O -0.33 -7.60 10.14 -92.41 -0.94 -8.54 16 18 C 0.05 0.78 4.74 71.98 0.34 1.12 16 19 C -0.12 -1.50 5.71 30.60 0.17 -1.32 16 20 C -0.02 -0.20 6.66 71.98 0.48 0.28 16 21 Cl -0.20 -2.85 29.15 -2.72 -0.08 -2.93 16 22 C -0.17 -4.49 9.99 22.37 0.22 -4.26 16 23 C -0.08 -2.29 9.67 22.25 0.22 -2.08 16 24 C -0.19 -7.55 7.06 30.62 0.22 -7.33 16 25 C -0.17 -6.44 9.96 30.62 0.30 -6.13 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 29 H 0.34 14.47 7.23 -89.70 -0.65 13.82 16 30 H 0.04 1.04 8.04 -2.38 -0.02 1.02 16 31 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 32 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.15 2.63 6.30 -2.91 -0.02 2.62 16 34 H 0.08 0.91 7.66 -2.39 -0.02 0.89 16 35 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.06 2.64 6.31 -2.39 -0.02 2.63 16 43 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 44 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -69.23 375.94 2.99 -66.24 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.13 Total: 29.26 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 3.98 Total: -44.38 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -1.70 Total: -86.89 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.94 Total: -8.54 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.59 Total: 47.24 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.08 Total: -2.93 kcal Total: -69.23 2.99 -66.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811501587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.013 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds