Wall clock time and date at job start Tue Mar 31 2020 13:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86799 * 120.00310 * 2 1 4 4 H 1.48496 * 109.47167 * 270.00131 * 3 2 1 5 5 H 1.48501 * 109.46997 * 30.00313 * 3 2 1 6 6 H 1.48504 * 109.47115 * 150.00340 * 3 2 1 7 7 C 1.38987 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.37322 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.36487 * 126.06824 * 179.97438 * 9 7 2 11 11 C 1.35701 * 107.50242 * 180.02562 * 10 9 7 12 12 N 1.40522 * 126.08494 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00178 * 179.97438 * 12 11 10 14 14 O 1.21603 * 120.00054 * 0.02562 * 13 12 11 15 15 C 1.47658 * 120.00306 * 180.02562 * 13 12 11 16 16 C 1.39759 * 120.00872 * 180.02562 * 15 13 12 17 17 C 1.37598 * 119.99567 * 180.30110 * 16 15 13 18 18 C 1.39709 * 120.00247 * 359.44333 * 17 16 15 19 19 C 1.47671 * 119.99257 * 180.25631 * 18 17 16 20 20 C 1.32283 * 124.59549 * 245.31728 * 19 18 17 21 21 C 1.51113 * 110.81651 * 179.97438 * 20 19 18 22 22 C 1.54586 * 104.81831 * 16.57222 * 21 20 19 23 23 C 1.51107 * 124.59058 * 65.02057 * 19 18 17 24 24 C 1.39712 * 120.01569 * 0.55235 * 18 17 16 25 25 C 1.37601 * 119.99842 * 359.72659 * 24 18 17 26 26 C 1.40661 * 107.82955 * 0.26075 * 11 10 9 27 27 N 1.30900 * 108.38793 * 359.55905 * 26 11 10 28 28 H 0.96997 * 119.99570 * 359.97438 * 1 2 3 29 29 H 1.07997 * 126.24931 * 0.02692 * 10 9 7 30 30 H 0.97001 * 120.00116 * 359.97438 * 12 11 10 31 31 H 1.08002 * 119.99733 * 0.02562 * 16 15 13 32 32 H 1.08004 * 119.99454 * 179.72127 * 17 16 15 33 33 H 1.08006 * 124.59353 * 359.93136 * 20 19 18 34 34 H 1.08990 * 110.37435 * 135.40910 * 21 20 19 35 35 H 1.09001 * 110.36871 * 257.74407 * 21 20 19 36 36 H 1.09003 * 110.98862 * 93.12631 * 22 21 20 37 37 H 1.09003 * 110.99644 * 216.90808 * 22 21 20 38 38 H 1.09003 * 110.36866 * 282.29687 * 23 19 18 39 39 H 1.08997 * 110.37481 * 44.62998 * 23 19 18 40 40 H 1.07992 * 120.00300 * 179.70357 * 24 18 17 41 41 H 1.07998 * 120.00048 * 179.97438 * 25 24 18 42 42 H 1.08004 * 125.80958 * 179.71020 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4445 2.6526 0.7001 6 1 3.5447 1.4400 0.7000 7 6 2.0078 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0010 9 7 1.3212 -2.3930 -0.0005 10 6 1.8749 -3.6405 -0.0015 11 6 0.8575 -4.5385 -0.0017 12 7 0.9885 -5.9376 -0.0021 13 6 -0.1107 -6.7174 -0.0018 14 8 -1.2160 -6.2102 -0.0015 15 6 0.0269 -8.1875 -0.0016 16 6 -1.1129 -8.9963 -0.0018 17 6 -0.9844 -10.3662 0.0046 18 6 0.2855 -10.9488 -0.0005 19 6 0.4232 -12.4190 0.0006 20 6 0.9505 -13.1232 0.9885 21 6 0.9356 -14.5990 0.6636 22 6 0.7003 -14.6653 -0.8629 23 6 -0.0250 -13.3235 -1.1239 24 6 1.4252 -10.1406 -0.0005 25 6 1.2970 -8.7706 -0.0010 26 6 -0.3515 -3.8196 -0.0069 27 7 -0.0716 -2.5409 -0.0002 28 1 -0.4849 0.8401 0.0004 29 1 2.9300 -3.8709 -0.0020 30 1 1.8701 -6.3422 -0.0027 31 1 -2.0945 -8.5459 -0.0024 32 1 -1.8652 -10.9912 0.0090 33 1 1.3396 -12.7007 1.9031 34 1 1.8923 -15.0536 0.9200 35 1 0.1238 -15.0962 1.1945 36 1 1.6464 -14.7133 -1.4020 37 1 0.0616 -15.5094 -1.1232 38 1 -1.1059 -13.4610 -1.0922 39 1 0.2778 -12.9110 -2.0863 40 1 2.4066 -10.5911 0.0004 41 1 2.1780 -8.1458 -0.0006 42 1 -1.3423 -4.2495 -0.0128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811886436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:12 Heat of formation + Delta-G solvation = 86.703288 kcal Electronic energy + Delta-G solvation = -24853.088882 eV Core-core repulsion = 21185.929945 eV Total energy + Delta-G solvation = -3667.158937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.25687 -39.56203 -38.70974 -37.48590 -34.28587 -33.23591 -32.07047 -31.09658 -30.22229 -28.87595 -28.40266 -27.40193 -24.97212 -23.55288 -22.65492 -21.18239 -21.00511 -20.41157 -19.39975 -18.77250 -17.75621 -17.25180 -16.44539 -15.88964 -15.50152 -15.45897 -14.95698 -14.58976 -14.54935 -14.17827 -13.81239 -13.60881 -13.27892 -13.10068 -13.02791 -12.90802 -12.77190 -12.12302 -12.05947 -11.67925 -11.60723 -11.49207 -11.43340 -11.38124 -11.25702 -11.17651 -10.93964 -10.53300 -10.16810 -9.32219 -9.24131 -9.16171 -9.11844 -8.80314 -8.59689 -8.05050 -6.68578 -6.55328 -4.21990 0.69803 1.28769 1.81341 2.88817 3.04818 3.05198 3.10526 3.58312 3.58744 3.88491 3.93911 4.16525 4.34632 4.48681 4.62932 4.65358 4.71117 4.76625 4.83289 5.02686 5.02786 5.14153 5.23326 5.29730 5.34444 5.43571 5.47734 5.52445 5.58556 5.71982 5.83360 5.89111 6.05414 6.22897 6.24245 6.30538 6.35180 6.47482 6.53343 6.76358 6.91503 6.96935 7.13322 7.24601 7.86419 8.18342 8.28375 8.63619 8.85554 9.38267 9.67556 10.40690 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.044888 B = 0.001937 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.619195 B =14454.922927 C =14887.081244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.616 5.616 13 C 0.537 3.463 14 O -0.533 6.533 15 C -0.116 4.116 16 C -0.061 4.061 17 C -0.115 4.115 18 C -0.025 4.025 19 C -0.101 4.101 20 C -0.152 4.152 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.089 4.089 24 C -0.114 4.114 25 C -0.090 4.090 26 C -0.031 4.031 27 N -0.260 5.260 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.396 0.604 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 -25.293 -0.224 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.235 4.235 11 C -0.166 4.166 12 N -0.258 5.258 13 C 0.324 3.676 14 O -0.412 6.412 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.133 4.133 18 C -0.025 4.025 19 C -0.101 4.101 20 C -0.170 4.170 21 C -0.136 4.136 22 C -0.162 4.162 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.108 4.108 26 C -0.206 4.206 27 N -0.091 5.091 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.230 0.770 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.711 -23.561 -0.221 23.717 hybrid contribution 1.352 -0.308 0.057 1.388 sum 4.063 -23.869 -0.164 24.213 Atomic orbital electron populations 1.70220 1.06133 1.27996 1.35230 1.25650 0.95715 1.00286 0.95505 0.85823 0.79380 0.79947 0.78965 1.19587 1.20074 1.18813 1.19876 0.91664 0.80549 1.53415 0.86603 1.44554 1.04068 1.03295 1.39026 1.21250 0.96805 0.85377 1.20034 1.17266 0.94405 0.81114 1.23846 1.42421 1.08138 1.04623 1.70627 1.18034 0.84590 0.85909 0.79024 1.90670 1.25609 1.74518 1.50387 1.20134 0.94126 0.93406 1.04262 1.21220 0.98888 0.92692 0.95209 1.21146 0.96592 0.94422 1.01098 1.18729 0.93319 0.91531 0.98968 1.20673 1.00603 0.91483 0.97328 1.23662 0.99709 0.95091 0.98542 1.21324 1.02048 0.94157 0.96090 1.22466 1.00732 0.97144 0.95867 1.21288 1.00434 0.93535 0.97300 1.21108 0.97992 0.92915 1.01187 1.21263 0.96518 0.95013 0.98048 1.24133 0.98080 0.90703 1.07724 1.78257 0.90091 1.15066 1.25726 0.91445 0.83675 0.77003 0.84348 0.85498 0.85573 0.90995 0.90550 0.90990 0.90859 0.90467 0.90922 0.85538 0.85418 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.67 11.81 55.49 0.66 -21.01 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 19.01 29.55 -169.99 -5.02 13.99 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.32 -8.60 10.25 -14.81 -0.15 -8.75 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 10 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 11 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 12 N -0.62 -11.40 5.41 -10.91 -0.06 -11.46 16 13 C 0.54 10.02 7.74 -12.42 -0.10 9.92 16 14 O -0.53 -11.90 13.48 5.27 0.07 -11.83 16 15 C -0.12 -1.67 5.88 -104.92 -0.62 -2.29 16 16 C -0.06 -0.81 9.58 -39.25 -0.38 -1.18 16 17 C -0.11 -1.24 9.76 -39.27 -0.38 -1.63 16 18 C -0.03 -0.26 5.65 -104.95 -0.59 -0.85 16 19 C -0.10 -0.87 5.49 -102.50 -0.56 -1.43 16 20 C -0.15 -1.17 10.68 -36.03 -0.38 -1.55 16 21 C -0.10 -0.59 6.80 -26.85 -0.18 -0.77 16 22 C -0.12 -0.71 7.18 -24.98 -0.18 -0.89 16 23 C -0.09 -0.63 6.75 -26.76 -0.18 -0.81 16 24 C -0.11 -1.16 9.76 -39.26 -0.38 -1.54 16 25 C -0.09 -1.03 9.52 -39.25 -0.37 -1.40 16 26 C -0.03 -0.83 10.85 -17.03 -0.18 -1.01 16 27 N -0.26 -7.68 10.39 30.80 0.32 -7.36 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 30 H 0.40 5.67 6.84 -40.82 -0.28 5.39 16 31 H 0.14 1.86 7.64 -52.49 -0.40 1.46 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.20 6.38 -52.49 -0.34 0.87 16 42 H 0.18 4.68 5.92 -52.48 -0.31 4.37 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -33.74 359.46 -9.27 -43.01 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.10 Total: 10.53 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -5.51 Total: -17.30 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.87 Total: -43.82 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.74 -9.27 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811886436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.715 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds