Wall clock time and date at job start Tue Mar 31 2020 14:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47278 * 270.00364 * 3 2 1 5 5 H 1.48504 * 109.46841 * 29.99705 * 3 2 1 6 6 H 1.48497 * 109.47490 * 149.99785 * 3 2 1 7 7 C 1.37871 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00391 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47699 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47231 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99992 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99693 * 179.97438 * 11 10 9 14 14 C 1.39588 * 119.99546 * 185.27963 * 13 11 10 15 15 C 1.39123 * 119.91248 * 33.52018 * 14 13 11 16 16 C 1.37664 * 120.09422 * 180.27611 * 15 14 13 17 17 C 1.39897 * 119.90608 * 359.51891 * 16 15 14 18 18 N 1.36488 * 120.09169 * 180.23393 * 17 16 15 19 19 N 1.29003 * 119.99880 * 0.24496 * 18 17 16 20 20 C 1.36707 * 119.99731 * 180.02562 * 19 18 17 21 21 C 1.39752 * 120.16193 * 359.73065 * 20 19 18 22 22 C 1.37913 * 119.83179 * 179.71773 * 21 20 19 23 23 C 1.38388 * 120.16276 * 0.55938 * 22 21 20 24 24 C 1.38396 * 120.32762 * 359.71672 * 23 22 21 25 25 C 1.37908 * 120.16296 * 0.02562 * 24 23 22 26 26 C 1.39890 * 119.81744 * 0.48078 * 17 16 15 27 27 C 1.37672 * 119.90648 * 359.75311 * 26 17 16 28 28 H 0.96998 * 120.00205 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46945 * 59.99253 * 9 7 2 30 30 H 1.09001 * 109.46911 * 300.00214 * 9 7 2 31 31 H 1.08995 * 109.47040 * 59.99448 * 10 9 7 32 32 H 1.09003 * 109.46673 * 300.00149 * 10 9 7 33 33 H 0.96997 * 120.00411 * 5.28038 * 13 11 10 34 34 H 1.08003 * 119.94925 * 0.02562 * 15 14 13 35 35 H 1.08001 * 120.04636 * 179.72866 * 16 15 14 36 36 H 1.07998 * 120.08194 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.91676 * 180.27218 * 22 21 20 38 38 H 1.08002 * 119.83932 * 179.69401 * 23 22 21 39 39 H 1.07999 * 119.91801 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.08427 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.04726 * 179.77074 * 26 17 16 42 42 H 1.08001 * 119.95329 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0008 14 6 1.4722 -7.3406 -0.1099 15 6 0.3112 -7.4058 -0.8737 16 6 -0.3789 -8.5922 -0.9808 17 6 0.0943 -9.7357 -0.3284 18 7 -0.5843 -10.9150 -0.4359 19 7 -1.6611 -10.9774 -1.1437 20 6 -2.3410 -12.1585 -1.2509 21 6 -1.8696 -13.3017 -0.5997 22 6 -2.5642 -14.4883 -0.7078 23 6 -3.7188 -14.5514 -1.4680 24 6 -4.1885 -13.4248 -2.1203 25 6 -3.5075 -12.2300 -2.0172 26 6 1.2621 -9.6658 0.4386 27 6 1.9436 -8.4743 0.5444 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8904 32 1 2.8720 -3.6042 -0.8895 33 1 3.1327 -6.1361 0.0774 34 1 -0.0513 -6.5234 -1.3800 35 1 -1.2825 -8.6408 -1.5704 36 1 -0.9660 -13.2551 -0.0101 37 1 -2.2035 -15.3716 -0.2016 38 1 -4.2558 -15.4846 -1.5531 39 1 -5.0900 -13.4817 -2.7122 40 1 -3.8749 -11.3518 -2.5271 41 1 1.6287 -10.5455 0.9469 42 1 2.8450 -8.4195 1.1368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812824010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:11 Heat of formation + Delta-G solvation = 65.173594 kcal Electronic energy + Delta-G solvation = -24196.502717 eV Core-core repulsion = 20528.410182 eV Total energy + Delta-G solvation = -3668.092535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51920 -39.79271 -38.75692 -36.95135 -34.62702 -33.58358 -32.15945 -31.34329 -31.26933 -30.97173 -29.04287 -26.40472 -25.22475 -23.19975 -23.13042 -22.59801 -21.52872 -20.42904 -19.83368 -17.88540 -17.75495 -17.04558 -16.76741 -16.04965 -15.69859 -15.38627 -14.75898 -14.67991 -14.63256 -14.53648 -14.31601 -14.00635 -13.76614 -13.60073 -13.41523 -13.25498 -12.72894 -12.54144 -12.23785 -12.01581 -11.89446 -11.53317 -11.38653 -11.24909 -10.98379 -10.66015 -10.39253 -10.07111 -9.80905 -9.42149 -9.34692 -9.18006 -9.16570 -9.12160 -8.99443 -8.38666 -7.70994 -6.02206 -4.07339 -0.47041 1.03906 1.15044 1.29441 2.26944 2.97500 3.15785 3.29818 3.34163 3.36537 3.38719 3.54052 3.86536 4.42285 4.55107 4.59213 4.68990 4.73466 4.79601 5.03670 5.08603 5.11597 5.17041 5.25943 5.33077 5.33493 5.52987 5.64072 5.69601 5.89031 5.95862 6.04514 6.05560 6.06176 6.10355 6.21127 6.25332 6.38810 6.42417 6.68463 6.73651 6.94572 7.49689 7.66211 7.74738 7.94864 7.98197 8.27118 8.44350 9.00343 9.56878 11.08636 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029185 B = 0.001761 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.155646 B =15899.023445 C =16735.165245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.508 3.492 12 O -0.506 6.506 13 N -0.685 5.685 14 C 0.200 3.800 15 C -0.135 4.135 16 C -0.064 4.064 17 C 0.007 3.993 18 N -0.196 5.196 19 N -0.234 5.234 20 C 0.055 3.945 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.065 4.065 26 C -0.028 4.028 27 C -0.164 4.164 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -29.109 -2.070 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.378 6.378 13 N -0.330 5.330 14 C 0.101 3.899 15 C -0.156 4.156 16 C -0.088 4.088 17 C -0.099 4.099 18 N -0.078 5.078 19 N -0.116 5.116 20 C -0.048 4.048 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.122 4.122 24 C -0.143 4.143 25 C -0.087 4.087 26 C -0.051 4.051 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.229 -28.866 -2.077 28.966 hybrid contribution 0.929 0.916 0.098 1.308 sum -0.300 -27.950 -1.979 28.021 Atomic orbital electron populations 1.69989 1.06076 1.26726 1.49891 1.25022 0.94835 0.99297 0.95166 0.86572 0.79754 0.83403 0.78104 1.20633 1.21188 1.19861 1.21179 0.92952 0.90875 1.51807 0.92505 1.18935 0.93142 0.89322 0.98803 1.21937 1.00895 0.90985 1.03052 1.21958 0.88901 0.85414 0.73888 1.90711 1.14317 1.87141 1.45631 1.44071 1.11031 1.04431 1.73506 1.18191 0.93083 0.85974 0.92605 1.21241 0.95874 0.98984 0.99528 1.21874 0.98883 0.91727 0.96290 1.18842 0.97598 0.89325 1.04177 1.72383 1.02071 1.24792 1.08526 1.72758 1.03273 1.24069 1.11532 1.19061 0.96244 0.89305 1.00239 1.22013 1.00022 0.92748 0.98087 1.21140 0.95749 0.97910 0.99578 1.21384 0.96031 0.98620 0.96127 1.21093 1.00327 0.92411 1.00419 1.21076 0.92726 0.98524 0.96387 1.20758 0.91827 0.97570 0.94959 1.20820 1.03040 0.92094 1.02620 0.92858 0.95685 0.95660 0.89692 0.89554 0.75150 0.83859 0.84273 0.84658 0.85651 0.85645 0.85109 0.84725 0.84502 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 10 C -0.13 -2.41 5.64 -27.89 -0.16 -2.57 16 11 C 0.51 9.03 7.56 -10.99 -0.08 8.95 16 12 O -0.51 -11.11 13.66 5.55 0.08 -11.04 16 13 N -0.69 -8.94 5.32 -9.82 -0.05 -8.99 16 14 C 0.20 2.67 6.28 -83.67 -0.53 2.14 16 15 C -0.14 -2.01 8.63 -39.46 -0.34 -2.36 16 16 C -0.06 -0.89 9.47 -39.17 -0.37 -1.26 16 17 C 0.01 0.09 6.67 -84.55 -0.56 -0.47 16 18 N -0.20 -2.57 10.04 32.19 0.32 -2.25 16 19 N -0.23 -3.08 10.04 32.18 0.32 -2.75 16 20 C 0.06 0.63 6.67 -84.56 -0.56 0.06 16 21 C -0.11 -1.04 9.48 -39.14 -0.37 -1.41 16 22 C -0.13 -0.95 10.03 -39.65 -0.40 -1.35 16 23 C -0.10 -0.68 10.04 -39.47 -0.40 -1.08 16 24 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 25 C -0.06 -0.59 10.00 -39.14 -0.39 -0.99 16 26 C -0.03 -0.30 9.99 -39.17 -0.39 -0.69 16 27 C -0.16 -1.72 9.94 -39.46 -0.39 -2.12 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.41 3.77 8.82 -40.82 -0.36 3.41 16 34 H 0.14 2.41 6.41 -52.48 -0.34 2.07 16 35 H 0.14 1.88 7.37 -52.49 -0.39 1.50 16 36 H 0.14 1.30 7.38 -52.49 -0.39 0.92 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -34.45 369.32 -9.16 -43.61 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.24 Total: 2.70 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -5.87 Total: -16.92 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 1.33 Total: -40.15 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.45 -9.16 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812824010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.782 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds