Wall clock time and date at job start Tue Mar 31 2020 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47278 * 270.00364 * 3 2 1 5 5 H 1.48504 * 109.46841 * 29.99705 * 3 2 1 6 6 H 1.48497 * 109.47490 * 149.99785 * 3 2 1 7 7 C 1.37871 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00391 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47699 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47231 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99992 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99693 * 179.97438 * 11 10 9 14 14 C 1.39588 * 119.99546 * 185.27963 * 13 11 10 15 15 C 1.39123 * 119.91248 * 33.52018 * 14 13 11 16 16 C 1.37664 * 120.09422 * 180.27611 * 15 14 13 17 17 C 1.39897 * 119.90608 * 359.51891 * 16 15 14 18 18 N 1.36488 * 120.09169 * 180.23393 * 17 16 15 19 19 N 1.29003 * 119.99880 * 0.24496 * 18 17 16 20 20 C 1.36707 * 119.99731 * 180.02562 * 19 18 17 21 21 C 1.39752 * 120.16193 * 359.73065 * 20 19 18 22 22 C 1.37913 * 119.83179 * 179.71773 * 21 20 19 23 23 C 1.38388 * 120.16276 * 0.55938 * 22 21 20 24 24 C 1.38396 * 120.32762 * 359.71672 * 23 22 21 25 25 C 1.37908 * 120.16296 * 0.02562 * 24 23 22 26 26 C 1.39890 * 119.81744 * 0.48078 * 17 16 15 27 27 C 1.37672 * 119.90648 * 359.75311 * 26 17 16 28 28 H 0.96998 * 120.00205 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46945 * 59.99253 * 9 7 2 30 30 H 1.09001 * 109.46911 * 300.00214 * 9 7 2 31 31 H 1.08995 * 109.47040 * 59.99448 * 10 9 7 32 32 H 1.09003 * 109.46673 * 300.00149 * 10 9 7 33 33 H 0.96997 * 120.00411 * 5.28038 * 13 11 10 34 34 H 1.08003 * 119.94925 * 0.02562 * 15 14 13 35 35 H 1.08001 * 120.04636 * 179.72866 * 16 15 14 36 36 H 1.07998 * 120.08194 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.91676 * 180.27218 * 22 21 20 38 38 H 1.08002 * 119.83932 * 179.69401 * 23 22 21 39 39 H 1.07999 * 119.91801 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.08427 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.04726 * 179.77074 * 26 17 16 42 42 H 1.08001 * 119.95329 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0008 14 6 1.4722 -7.3406 -0.1099 15 6 0.3112 -7.4058 -0.8737 16 6 -0.3789 -8.5922 -0.9808 17 6 0.0943 -9.7357 -0.3284 18 7 -0.5843 -10.9150 -0.4359 19 7 -1.6611 -10.9774 -1.1437 20 6 -2.3410 -12.1585 -1.2509 21 6 -1.8696 -13.3017 -0.5997 22 6 -2.5642 -14.4883 -0.7078 23 6 -3.7188 -14.5514 -1.4680 24 6 -4.1885 -13.4248 -2.1203 25 6 -3.5075 -12.2300 -2.0172 26 6 1.2621 -9.6658 0.4386 27 6 1.9436 -8.4743 0.5444 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8904 32 1 2.8720 -3.6042 -0.8895 33 1 3.1327 -6.1361 0.0774 34 1 -0.0513 -6.5234 -1.3800 35 1 -1.2825 -8.6408 -1.5704 36 1 -0.9660 -13.2551 -0.0101 37 1 -2.2035 -15.3716 -0.2016 38 1 -4.2558 -15.4846 -1.5531 39 1 -5.0900 -13.4817 -2.7122 40 1 -3.8749 -11.3518 -2.5271 41 1 1.6287 -10.5455 0.9469 42 1 2.8450 -8.4195 1.1368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812824010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:10 Heat of formation + Delta-G solvation = 43.656931 kcal Electronic energy + Delta-G solvation = -24197.435750 eV Core-core repulsion = 20528.410182 eV Total energy + Delta-G solvation = -3669.025567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69424 -40.61852 -39.80052 -37.91311 -35.80820 -35.57415 -33.32155 -32.69311 -32.15339 -31.96108 -30.02991 -27.96817 -26.49019 -24.35019 -24.10797 -23.52688 -22.83839 -21.33742 -21.20723 -18.98670 -18.78773 -18.61134 -17.65428 -17.45691 -16.89657 -16.48033 -16.43189 -15.76423 -15.57245 -15.55412 -15.37159 -14.90983 -14.85140 -14.59955 -14.38294 -14.34460 -14.12631 -13.95969 -13.57731 -13.26047 -13.04827 -12.81873 -12.56535 -12.48249 -12.31090 -12.11687 -11.93132 -11.66377 -11.47220 -11.31610 -10.87398 -10.57102 -10.10587 -10.05228 -9.98732 -9.97941 -8.65997 -8.18629 -6.32598 -1.35431 0.28310 0.32476 0.40639 1.30926 1.42786 1.45095 1.55969 1.71547 2.00433 2.43280 2.49254 2.72858 2.98214 3.15062 3.70507 3.86076 3.93550 3.95419 4.00268 4.15156 4.20907 4.32732 4.38597 4.43008 4.46264 4.50416 4.53453 4.57769 4.85632 4.97846 5.04547 5.06407 5.20205 5.26993 5.32952 5.33562 5.39537 5.49002 5.49722 5.57893 5.61182 5.83876 5.87146 6.04370 6.15922 6.39814 6.85889 7.02711 7.13937 7.38029 8.93928 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029185 B = 0.001761 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.155646 B =15899.023445 C =16735.165245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.039 3.961 10 C -0.116 4.116 11 C 0.512 3.488 12 O -0.561 6.561 13 N -0.659 5.659 14 C 0.177 3.823 15 C -0.153 4.153 16 C -0.083 4.083 17 C 0.002 3.998 18 N -0.212 5.212 19 N -0.244 5.244 20 C 0.016 3.984 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.088 4.088 24 C -0.123 4.123 25 C -0.073 4.073 26 C -0.024 4.024 27 C -0.139 4.139 28 H 0.262 0.738 29 H -0.017 1.017 30 H -0.016 1.016 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.434 0.566 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.171 0.829 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -31.857 -1.429 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.001 3.999 10 C -0.156 4.156 11 C 0.302 3.698 12 O -0.437 6.437 13 N -0.306 5.306 14 C 0.079 3.921 15 C -0.174 4.174 16 C -0.107 4.107 17 C -0.104 4.104 18 N -0.093 5.093 19 N -0.126 5.126 20 C -0.088 4.088 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.108 4.108 24 C -0.142 4.142 25 C -0.096 4.096 26 C -0.046 4.046 27 C -0.160 4.160 28 H 0.071 0.929 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.275 0.725 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.188 0.812 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.042 -31.650 -1.435 31.699 hybrid contribution 0.045 1.462 -0.170 1.472 sum 1.086 -30.188 -1.605 30.250 Atomic orbital electron populations 1.70176 1.08340 1.27779 1.51518 1.26131 0.95686 1.03973 0.94687 0.85326 0.78726 0.77765 0.78457 1.19826 1.21410 1.17724 1.21717 0.94129 0.91469 1.50689 0.90283 1.18728 0.93795 0.92497 0.94883 1.21682 0.99329 0.88829 1.05723 1.21705 0.88055 0.86548 0.73452 1.90709 1.16609 1.87919 1.48501 1.43572 1.11908 1.03037 1.72108 1.18306 0.93124 0.86783 0.93869 1.21071 0.97342 0.98173 1.00817 1.21774 0.99076 0.92233 0.97590 1.19219 0.98363 0.88884 1.03959 1.72463 1.02592 1.24452 1.09805 1.72658 1.03213 1.25809 1.10933 1.19347 0.97517 0.89379 1.02584 1.22112 1.00307 0.93256 0.98018 1.21490 0.95779 0.97824 0.99530 1.21870 0.95207 0.99695 0.93980 1.21479 1.00857 0.91589 1.00252 1.21325 0.92382 0.99792 0.96089 1.21151 0.90607 0.98836 0.94056 1.21186 1.03545 0.90342 1.00914 0.92925 0.99874 0.99774 0.86734 0.86908 0.72493 0.87047 0.85415 0.85031 0.83043 0.82153 0.82262 0.84618 0.81174 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.18 13.29 21.44 0.28 -58.90 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.09 4.26 29.85 0.13 2.21 16 10 C -0.12 -4.31 5.64 29.85 0.17 -4.15 16 11 C 0.51 18.68 7.56 87.66 0.66 19.35 16 12 O -0.56 -26.57 13.66 -3.04 -0.04 -26.61 16 13 N -0.66 -16.62 5.32 -303.38 -1.62 -18.23 16 14 C 0.18 4.68 6.28 38.33 0.24 4.92 16 15 C -0.15 -4.94 8.63 22.35 0.19 -4.75 16 16 C -0.08 -2.52 9.47 22.54 0.21 -2.30 16 17 C 0.00 0.05 6.67 39.22 0.26 0.31 16 18 N -0.21 -5.69 10.04 -52.06 -0.52 -6.22 16 19 N -0.24 -6.76 10.04 -52.11 -0.52 -7.29 16 20 C 0.02 0.37 6.67 39.12 0.26 0.63 16 21 C -0.11 -2.17 9.48 22.56 0.21 -1.95 16 22 C -0.13 -1.62 10.03 22.23 0.22 -1.39 16 23 C -0.09 -0.87 10.04 22.34 0.22 -0.65 16 24 C -0.12 -1.46 10.03 22.23 0.22 -1.24 16 25 C -0.07 -1.33 10.00 22.56 0.23 -1.10 16 26 C -0.02 -0.46 9.99 22.54 0.23 -0.23 16 27 C -0.14 -2.58 9.94 22.35 0.22 -2.35 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 30 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 31 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.43 6.74 8.82 -92.71 -0.82 5.92 16 34 H 0.11 4.26 6.41 -2.91 -0.02 4.24 16 35 H 0.13 3.97 7.37 -2.91 -0.02 3.95 16 36 H 0.13 2.50 7.38 -2.91 -0.02 2.48 16 37 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.14 2.29 8.06 -2.92 -0.02 2.26 16 41 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -82.36 369.32 4.22 -78.14 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.23 Total: 15.84 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.38 Total: -22.52 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.38 Total: -90.64 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -82.36 4.22 -78.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812824010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.798 kcal (2) G-P(sol) polarization free energy of solvation -82.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds