Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47071 * 2 1 4 4 C 1.38403 * 119.82585 * 90.00233 * 3 2 1 5 5 C 1.37884 * 120.17075 * 180.02562 * 4 3 2 6 6 C 1.39848 * 119.82721 * 359.97438 * 5 4 3 7 7 C 1.43194 * 120.17249 * 180.02562 * 6 5 4 8 8 C 6.88301 * 109.46028 * 0.02562 * 2 1 3 9 9 C 8.31503 * 109.45907 * 0.02562 * 2 1 3 10 10 O 1.21717 * 120.00075 * 200.23716 * 9 8 7 11 11 N 1.34778 * 120.00150 * 20.23412 * 9 8 7 12 12 C 1.40058 * 119.99902 * 180.02562 * 11 9 8 13 13 C 1.40432 * 125.97886 * 0.02562 * 12 11 9 14 14 C 1.35230 * 107.86634 * 179.72750 * 13 12 11 15 15 N 1.34972 * 107.86854 * 0.39201 * 14 13 12 16 16 C 1.46495 * 125.97661 * 179.87328 * 15 14 13 17 17 C 1.50702 * 109.47571 * 124.71645 * 16 15 14 18 18 H 1.08002 * 119.99446 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00072 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 179.72119 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31236 * 125.97612 * 179.97438 * 12 11 9 26 26 C 1.39843 * 119.65503 * 0.27274 * 6 5 4 27 27 C 1.37889 * 119.82815 * 359.49142 * 26 6 5 28 28 H 1.09001 * 109.46810 * 299.99556 * 1 2 3 29 29 H 1.08996 * 109.47349 * 59.99544 * 1 2 3 30 30 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46810 * 240.00444 * 2 1 3 32 32 H 1.08996 * 109.47349 * 120.00456 * 2 1 3 33 33 H 1.07999 * 119.91090 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.09073 * 179.97438 * 5 4 3 35 35 H 0.96996 * 120.00194 * 359.97438 * 11 9 8 36 36 H 1.08003 * 126.06479 * 359.97438 * 13 12 11 37 37 H 1.08002 * 126.06375 * 180.28313 * 14 13 12 38 38 H 1.09000 * 109.47378 * 4.71304 * 16 15 14 39 39 H 1.09001 * 109.47153 * 244.71425 * 16 15 14 40 40 H 0.96999 * 120.00128 * 180.27192 * 20 19 17 41 41 H 1.08007 * 120.07901 * 179.72732 * 26 6 5 42 42 H 1.07995 * 119.91201 * 180.23089 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0698 1.2007 5 6 2.7209 3.3700 1.2090 6 6 2.9551 4.0327 0.0000 7 6 3.4324 5.3827 0.0000 8 6 3.8231 6.4898 0.0029 9 6 4.3000 7.8401 0.0035 10 8 3.5701 8.7432 0.3684 11 7 5.5571 8.1110 -0.3999 12 6 6.0237 9.4315 -0.3988 13 6 5.2933 10.5643 -0.0044 14 6 6.0953 11.6442 -0.1432 15 7 7.2857 11.2179 -0.6156 16 6 8.4455 12.0619 -0.9135 17 6 9.6437 11.5561 -0.1521 18 1 9.5504 10.6925 0.4897 19 6 10.8586 12.1963 -0.2742 20 7 11.9029 11.7582 0.3944 21 14 11.0198 13.6904 -1.3839 22 1 11.4004 13.2527 -2.7510 23 1 9.7215 14.4093 -1.4378 24 1 12.0654 14.5967 -0.8452 25 7 7.2203 9.8267 -0.7652 26 6 2.7159 3.3718 -1.2090 27 6 2.2614 2.0699 -1.2007 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0808 1.5565 2.1335 34 1 2.8992 3.8753 2.1467 35 1 6.1390 7.3913 -0.6903 36 1 4.2734 10.5711 0.3510 37 1 5.8298 12.6665 0.0820 38 1 8.2334 13.0890 -0.6164 39 1 8.6540 12.0286 -1.9828 40 1 12.7567 12.2110 0.3116 41 1 2.8903 3.8786 -2.1467 42 1 2.0798 1.5570 -2.1336 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815648289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = 122.047855 kcal Electronic energy + Delta-G solvation = -23743.499493 eV Core-core repulsion = 20077.873211 eV Total energy + Delta-G solvation = -3665.626282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.82216 -39.89521 -39.30816 -35.43760 -34.90845 -33.46295 -33.09091 -31.47214 -31.32488 -29.75434 -29.44268 -27.32798 -25.31174 -23.82138 -23.13282 -22.39628 -21.60093 -20.80311 -19.95065 -18.80236 -17.46941 -17.10123 -16.60262 -16.05651 -16.01798 -15.64124 -15.32763 -14.77104 -14.43662 -14.38339 -14.21713 -13.90794 -13.81593 -13.66307 -13.20866 -13.08495 -12.60360 -12.59515 -12.41885 -12.17926 -11.93670 -11.50320 -11.39098 -11.38141 -11.22282 -10.93739 -10.79834 -10.58460 -10.29866 -10.05330 -9.90274 -9.55923 -9.43243 -8.82997 -8.78082 -8.26669 -7.61154 -6.24724 -4.27459 0.35677 0.94655 1.27764 2.19181 2.63045 2.67823 3.13158 3.15395 3.20290 3.23061 3.46048 3.51917 3.73472 4.07130 4.21649 4.26039 4.34169 4.51591 4.70590 4.84138 4.86159 4.94528 5.02928 5.04237 5.09171 5.38296 5.41437 5.43293 5.52617 5.59723 5.64209 5.71940 5.87420 5.99344 6.06954 6.12561 6.33560 6.39027 6.45224 6.47542 6.61025 6.88662 7.20539 7.23444 7.46898 7.76276 8.03204 8.30930 8.48611 8.84686 9.29882 10.87907 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.001671 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.359505 B =16756.883761 C =17258.091259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.067 4.067 4 C -0.118 4.118 5 C -0.082 4.082 6 C -0.007 4.007 7 C -0.035 4.035 8 C -0.187 4.187 9 C 0.641 3.359 10 O -0.497 6.497 11 N -0.615 5.615 12 C 0.259 3.741 13 C -0.283 4.283 14 C 0.054 3.946 15 N -0.316 5.316 16 C 0.231 3.769 17 C -0.536 4.536 18 H 0.086 0.914 19 C 0.077 3.923 20 N -0.887 5.887 21 Si 0.875 3.125 22 H -0.272 1.272 23 H -0.265 1.265 24 H -0.280 1.280 25 N -0.292 5.292 26 C -0.082 4.082 27 C -0.119 4.119 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.417 0.583 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.771 -20.725 -2.048 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.067 4.067 4 C -0.136 4.136 5 C -0.100 4.100 6 C -0.008 4.008 7 C -0.037 4.037 8 C -0.190 4.190 9 C 0.427 3.573 10 O -0.372 6.372 11 N -0.262 5.262 12 C 0.005 3.995 13 C -0.314 4.314 14 C -0.095 4.095 15 N -0.098 5.098 16 C 0.112 3.888 17 C -0.574 4.574 18 H 0.104 0.896 19 C -0.127 4.127 20 N -0.524 5.524 21 Si 0.701 3.299 22 H -0.197 1.197 23 H -0.189 1.189 24 H -0.206 1.206 25 N -0.122 5.122 26 C -0.100 4.100 27 C -0.137 4.137 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.253 0.747 36 H 0.180 0.820 37 H 0.188 0.812 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.149 0.851 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.839 -20.306 -2.218 29.180 hybrid contribution -0.052 0.739 -0.332 0.812 sum -20.891 -19.566 -2.550 28.736 Atomic orbital electron populations 1.21757 0.94401 1.01945 1.02426 1.20613 0.96407 0.92323 1.03259 1.20141 0.97066 0.96372 0.93114 1.20972 1.00254 0.94451 0.97961 1.21300 0.97073 0.94553 0.97041 1.16041 1.02761 0.87607 0.94342 1.19246 0.97521 0.91385 0.95569 1.20231 1.02361 0.92630 1.03780 1.14377 0.80995 0.83943 0.77991 1.90838 1.55815 1.44907 1.45596 1.42137 1.13374 1.06577 1.64119 1.18983 0.93075 0.84612 1.02793 1.21562 1.03292 0.89447 1.17066 1.22569 0.86440 1.00229 1.00279 1.48660 1.11121 1.03260 1.46774 1.20086 0.82483 0.88514 0.97670 1.21110 0.91703 1.16340 1.28293 0.89617 1.24830 0.95331 0.97144 0.95409 1.69873 1.00959 1.40511 1.41062 0.86887 0.78694 0.82976 0.81371 1.19701 1.18942 1.20565 1.77422 1.15888 0.92055 1.26882 1.21282 0.97237 0.94518 0.96967 1.20967 1.00328 0.94420 0.97948 0.92408 0.92411 0.92208 0.90713 0.90709 0.85268 0.85068 0.74732 0.81963 0.81156 0.92767 0.94359 0.92153 0.85089 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.22 16 2 C -0.09 -0.38 6.06 -27.88 -0.17 -0.55 16 3 C -0.07 -0.42 5.14 -104.50 -0.54 -0.95 16 4 C -0.12 -0.78 9.68 -39.65 -0.38 -1.17 16 5 C -0.08 -0.66 9.77 -39.11 -0.38 -1.04 16 6 C -0.01 -0.07 5.74 -106.77 -0.61 -0.68 16 7 C -0.03 -0.40 13.25 -38.84 -0.51 -0.91 16 8 C -0.19 -2.47 13.61 -38.84 -0.53 -3.00 16 9 C 0.64 10.09 7.62 -14.33 -0.11 9.98 16 10 O -0.50 -9.13 14.21 5.17 0.07 -9.06 16 11 N -0.62 -9.91 5.44 -13.32 -0.07 -9.98 16 12 C 0.26 5.16 8.10 -154.46 -1.25 3.91 16 13 C -0.28 -5.45 9.60 -39.83 -0.38 -5.83 16 14 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 15 N -0.32 -7.09 3.67 -62.56 -0.23 -7.32 16 16 C 0.23 5.43 5.33 -5.20 -0.03 5.40 16 17 C -0.54 -15.07 9.79 -34.44 -0.34 -15.41 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 21 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 N -0.29 -6.65 12.42 31.43 0.39 -6.26 16 26 C -0.08 -0.65 9.77 -39.11 -0.38 -1.03 16 27 C -0.12 -0.77 9.68 -39.65 -0.38 -1.15 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.42 5.61 8.79 -40.82 -0.36 5.25 16 36 H 0.16 3.02 5.90 -52.48 -0.31 2.71 16 37 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 38 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 39 H 0.04 0.88 7.57 -51.93 -0.39 0.49 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -33.69 374.48 -9.26 -42.96 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.24 Total: 4.17 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -5.93 Total: -9.78 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.86 Total: -49.29 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.69 -9.26 -42.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815648289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.004 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds