Wall clock time and date at job start Tue Mar 31 2020 14:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47160 * 269.99895 * 3 2 1 5 5 H 1.48501 * 109.47088 * 29.99936 * 3 2 1 6 6 H 1.48499 * 109.47304 * 149.99817 * 3 2 1 7 7 C 1.38633 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99745 * 359.97438 * 7 2 1 9 9 O 1.34805 * 120.00433 * 179.97438 * 7 2 1 10 10 C 1.35780 * 117.00118 * 174.97219 * 9 7 2 11 11 C 1.38737 * 120.08677 * 5.23492 * 10 9 7 12 12 C 1.38350 * 119.97260 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.92224 * 179.97438 * 12 11 10 14 14 C 1.38546 * 120.15405 * 0.02562 * 12 11 10 15 15 C 1.38204 * 120.17091 * 359.74174 * 14 12 11 16 16 C 1.38690 * 120.02327 * 0.50972 * 15 14 12 17 17 N 1.40135 * 120.07335 * 179.76441 * 16 15 14 18 18 C 1.34766 * 120.00336 * 335.25585 * 17 16 15 19 19 O 1.21600 * 120.00074 * 354.47518 * 18 17 16 20 20 N 1.34775 * 120.00358 * 174.47266 * 18 17 16 21 21 N 1.36606 * 119.99867 * 359.97438 * 20 18 17 22 22 C 1.46845 * 110.99953 * 244.21185 * 21 20 18 23 23 C 1.53036 * 109.52037 * 174.16325 * 22 21 20 24 24 C 1.53109 * 109.28296 * 59.17623 * 23 22 21 25 25 C 1.53119 * 109.16063 * 302.34640 * 24 23 22 26 26 C 1.46843 * 110.99967 * 119.99906 * 21 20 18 27 27 H 0.97003 * 119.99721 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.01564 * 359.95587 * 11 10 9 29 29 H 1.07998 * 119.90826 * 179.97438 * 14 12 11 30 30 H 1.07994 * 119.98315 * 180.25776 * 15 14 12 31 31 H 0.97008 * 119.99260 * 155.52729 * 17 16 15 32 32 H 0.97000 * 120.00230 * 180.02562 * 20 18 17 33 33 H 1.09000 * 109.46248 * 294.17336 * 22 21 20 34 34 H 1.08996 * 109.46280 * 54.14349 * 22 21 20 35 35 H 1.09000 * 109.50415 * 299.23113 * 23 22 21 36 36 H 1.09008 * 109.53753 * 179.13964 * 23 22 21 37 37 H 1.08998 * 109.52725 * 182.44376 * 24 23 22 38 38 H 1.09002 * 109.52250 * 62.25233 * 24 23 22 39 39 H 1.08995 * 109.50621 * 297.70953 * 25 24 23 40 40 H 1.08998 * 109.50485 * 177.59077 * 25 24 23 41 41 H 1.08999 * 109.46163 * 305.86171 * 26 21 20 42 42 H 1.09008 * 109.46179 * 65.82491 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0014 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4059 0.1066 11 6 3.2238 -3.5733 0.1005 12 6 3.8543 -4.8000 0.2087 13 9 3.1235 -5.9363 0.2031 14 6 5.2334 -4.8659 0.3238 15 6 5.9864 -3.7070 0.3258 16 6 5.3614 -2.4732 0.2230 17 7 6.1236 -1.2972 0.2298 18 6 7.3382 -1.2848 0.8135 19 8 7.7309 -2.2622 1.4210 20 7 8.1178 -0.1890 0.7239 21 7 7.6769 0.9089 0.0410 22 6 8.5197 1.1722 -1.1323 23 6 7.9142 2.3148 -1.9508 24 6 7.8186 3.5679 -1.0762 25 6 6.9759 3.2528 0.1628 26 6 7.6086 2.0831 0.9201 27 1 -0.4850 0.8401 0.0004 28 1 2.1486 -3.5246 0.0115 29 1 5.7215 -5.8256 0.4085 30 1 7.0616 -3.7621 0.4115 31 1 5.7750 -0.4911 -0.1821 32 1 8.9922 -0.1802 1.1437 33 1 9.5212 1.4512 -0.8048 34 1 8.5759 0.2745 -1.7479 35 1 6.9181 2.0311 -2.2904 36 1 8.5478 2.5208 -2.8136 37 1 7.3479 4.3719 -1.6418 38 1 8.8183 3.8745 -0.7684 39 1 5.9650 2.9839 -0.1433 40 1 6.9397 4.1286 0.8107 41 1 7.0032 1.8469 1.7952 42 1 8.6144 2.3578 1.2380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836456029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:21 Heat of formation + Delta-G solvation = -39.840473 kcal Electronic energy + Delta-G solvation = -27998.632511 eV Core-core repulsion = 23895.217000 eV Total energy + Delta-G solvation = -4103.415511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.21331 -40.63760 -39.42689 -38.44368 -36.45837 -35.08735 -34.00456 -32.45096 -31.15995 -30.29567 -29.47396 -28.11589 -25.37828 -24.18658 -23.38347 -22.71943 -21.65310 -20.40074 -20.24236 -18.42531 -18.20561 -17.97420 -17.43532 -16.19342 -15.86648 -15.43202 -15.24659 -15.09412 -14.95945 -14.57466 -14.43798 -14.08244 -13.96127 -13.80043 -13.64674 -13.61873 -13.40447 -13.17020 -12.56661 -12.40212 -12.25301 -11.81037 -11.52083 -11.46350 -11.05893 -10.97592 -10.91577 -10.82512 -10.74049 -10.39980 -9.99275 -9.73432 -9.53918 -9.33016 -9.09249 -8.95567 -7.89873 -7.09275 -6.49339 -4.16032 1.82208 2.08049 2.57024 3.14618 3.16570 3.29964 3.32321 3.54449 4.14253 4.34477 4.38419 4.57309 4.59192 4.63459 4.87570 4.89836 5.00235 5.01910 5.06180 5.21163 5.29081 5.45924 5.56024 5.57127 5.59929 5.72131 5.75427 5.89659 5.90754 5.99118 6.11371 6.17798 6.50127 6.52175 6.70128 6.86756 6.88693 6.99115 7.07307 7.35560 7.52113 7.71615 7.92716 8.31197 8.79658 8.84315 9.40236 10.57817 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.005646 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.360879 B = 4958.388758 C = 7401.713917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.210 6.210 10 C 0.161 3.839 11 C -0.243 4.243 12 C 0.122 3.878 13 F -0.150 7.150 14 C -0.216 4.216 15 C -0.067 4.067 16 C 0.084 3.916 17 N -0.649 5.649 18 C 0.728 3.272 19 O -0.583 6.583 20 N -0.590 5.590 21 N -0.308 5.308 22 C 0.039 3.961 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.119 4.119 26 C 0.038 3.962 27 H 0.280 0.720 28 H 0.149 0.851 29 H 0.124 0.876 30 H 0.150 0.850 31 H 0.420 0.580 32 H 0.394 0.606 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.546 6.425 -2.299 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.464 4.464 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.106 3.894 11 C -0.264 4.264 12 C 0.102 3.898 13 F -0.129 7.129 14 C -0.236 4.236 15 C -0.087 4.087 16 C -0.011 4.011 17 N -0.296 5.296 18 C 0.430 3.570 19 O -0.459 6.459 20 N -0.341 5.341 21 N -0.129 5.129 22 C -0.089 4.089 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.158 4.158 26 C -0.089 4.089 27 H 0.091 0.909 28 H 0.166 0.834 29 H 0.142 0.858 30 H 0.167 0.833 31 H 0.258 0.742 32 H 0.236 0.764 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.064 5.926 -2.103 17.251 hybrid contribution 0.892 1.251 0.257 1.558 sum 16.957 7.177 -1.846 18.505 Atomic orbital electron populations 1.69651 1.05576 1.28591 1.47312 1.24460 0.95025 0.98800 0.95596 0.86223 0.80540 0.81499 0.78993 1.19722 1.20862 1.17928 1.20751 0.76457 0.96801 1.52373 0.87436 1.83510 1.22993 1.24660 1.80268 1.18389 0.89195 0.85907 0.95887 1.20945 1.02022 0.90035 1.13354 1.17458 0.89083 0.81307 1.01972 1.91419 1.77898 1.49462 1.94111 1.20549 0.91529 0.98998 1.12574 1.20804 1.00786 0.88958 0.98184 1.16784 0.86807 0.86007 1.11522 1.42181 1.15919 1.13425 1.58092 1.15503 0.80862 0.81632 0.79043 1.90918 1.74220 1.32794 1.47939 1.44755 1.19832 1.11125 1.58375 1.62689 1.47238 0.98701 1.04234 1.22638 0.94508 0.99927 0.91855 1.21606 1.02592 0.93758 0.97635 1.21615 1.00001 0.97819 0.96625 1.21623 1.00629 0.96684 0.96851 1.22631 1.00270 0.89744 0.96297 0.90934 0.83380 0.85827 0.83285 0.74246 0.76432 0.94053 0.89802 0.90280 0.90848 0.91263 0.92207 0.90283 0.90756 0.89684 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 13.96 55.48 0.77 -23.66 16 2 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.90 20.15 28.62 -169.99 -4.86 15.29 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.45 9.94 30.88 0.31 -10.15 16 8 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 9 O -0.21 -5.14 7.99 0.03 0.00 -5.14 16 10 C 0.16 3.61 6.66 -38.94 -0.26 3.35 16 11 C -0.24 -5.34 9.14 -39.36 -0.36 -5.70 16 12 C 0.12 2.44 7.29 -39.43 -0.29 2.16 16 13 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 14 C -0.22 -3.97 10.02 -39.48 -0.40 -4.37 16 15 C -0.07 -1.26 8.72 -39.43 -0.34 -1.60 16 16 C 0.08 1.70 6.45 -83.44 -0.54 1.17 16 17 N -0.65 -11.78 5.25 -14.07 -0.07 -11.85 16 18 C 0.73 12.17 8.47 -86.93 -0.74 11.44 16 19 O -0.58 -11.14 14.34 5.28 0.08 -11.07 16 20 N -0.59 -7.43 4.77 27.63 0.13 -7.30 16 21 N -0.31 -3.51 3.83 -113.82 -0.44 -3.95 16 22 C 0.04 0.35 5.83 -3.84 -0.02 0.33 16 23 C -0.12 -0.98 6.09 -26.66 -0.16 -1.14 16 24 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 25 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 26 C 0.04 0.39 5.83 -3.84 -0.02 0.37 16 27 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.15 3.40 5.63 -52.49 -0.30 3.10 16 29 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.15 2.74 5.78 -52.49 -0.30 2.44 16 31 H 0.42 7.53 7.40 -40.82 -0.30 7.23 16 32 H 0.39 4.19 8.93 -185.15 -1.65 2.54 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -29.32 350.37 -8.94 -38.26 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.62 Total: 11.92 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.24 Total: -4.89 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.40 Total: -46.76 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.08 Total: -16.21 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.86 Total: 15.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.32 -8.94 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836456029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.582 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds