Wall clock time and date at job start Tue Mar 31 2020 14:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48506 * 109.47160 * 269.99895 * 3 2 1 5 5 H 1.48501 * 109.47088 * 29.99936 * 3 2 1 6 6 H 1.48499 * 109.47304 * 149.99817 * 3 2 1 7 7 C 1.38633 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99745 * 359.97438 * 7 2 1 9 9 O 1.34805 * 120.00433 * 179.97438 * 7 2 1 10 10 C 1.35780 * 117.00118 * 174.97219 * 9 7 2 11 11 C 1.38737 * 120.08677 * 5.23492 * 10 9 7 12 12 C 1.38350 * 119.97260 * 179.97438 * 11 10 9 13 13 F 1.35099 * 119.92224 * 179.97438 * 12 11 10 14 14 C 1.38546 * 120.15405 * 0.02562 * 12 11 10 15 15 C 1.38204 * 120.17091 * 359.74174 * 14 12 11 16 16 C 1.38690 * 120.02327 * 0.50972 * 15 14 12 17 17 N 1.40135 * 120.07335 * 179.76441 * 16 15 14 18 18 C 1.34766 * 120.00336 * 335.25585 * 17 16 15 19 19 O 1.21600 * 120.00074 * 354.47518 * 18 17 16 20 20 N 1.34775 * 120.00358 * 174.47266 * 18 17 16 21 21 N 1.36606 * 119.99867 * 359.97438 * 20 18 17 22 22 C 1.46845 * 110.99953 * 244.21185 * 21 20 18 23 23 C 1.53036 * 109.52037 * 174.16325 * 22 21 20 24 24 C 1.53109 * 109.28296 * 59.17623 * 23 22 21 25 25 C 1.53119 * 109.16063 * 302.34640 * 24 23 22 26 26 C 1.46843 * 110.99967 * 119.99906 * 21 20 18 27 27 H 0.97003 * 119.99721 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.01564 * 359.95587 * 11 10 9 29 29 H 1.07998 * 119.90826 * 179.97438 * 14 12 11 30 30 H 1.07994 * 119.98315 * 180.25776 * 15 14 12 31 31 H 0.97008 * 119.99260 * 155.52729 * 17 16 15 32 32 H 0.97000 * 120.00230 * 180.02562 * 20 18 17 33 33 H 1.09000 * 109.46248 * 294.17336 * 22 21 20 34 34 H 1.08996 * 109.46280 * 54.14349 * 22 21 20 35 35 H 1.09000 * 109.50415 * 299.23113 * 23 22 21 36 36 H 1.09008 * 109.53753 * 179.13964 * 23 22 21 37 37 H 1.08998 * 109.52725 * 182.44376 * 24 23 22 38 38 H 1.09002 * 109.52250 * 62.25233 * 24 23 22 39 39 H 1.08995 * 109.50621 * 297.70953 * 25 24 23 40 40 H 1.08998 * 109.50485 * 177.59077 * 25 24 23 41 41 H 1.08999 * 109.46163 * 305.86171 * 26 21 20 42 42 H 1.09008 * 109.46179 * 65.82491 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0014 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4059 0.1066 11 6 3.2238 -3.5733 0.1005 12 6 3.8543 -4.8000 0.2087 13 9 3.1235 -5.9363 0.2031 14 6 5.2334 -4.8659 0.3238 15 6 5.9864 -3.7070 0.3258 16 6 5.3614 -2.4732 0.2230 17 7 6.1236 -1.2972 0.2298 18 6 7.3382 -1.2848 0.8135 19 8 7.7309 -2.2622 1.4210 20 7 8.1178 -0.1890 0.7239 21 7 7.6769 0.9089 0.0410 22 6 8.5197 1.1722 -1.1323 23 6 7.9142 2.3148 -1.9508 24 6 7.8186 3.5679 -1.0762 25 6 6.9759 3.2528 0.1628 26 6 7.6086 2.0831 0.9201 27 1 -0.4850 0.8401 0.0004 28 1 2.1486 -3.5246 0.0115 29 1 5.7215 -5.8256 0.4085 30 1 7.0616 -3.7621 0.4115 31 1 5.7750 -0.4911 -0.1821 32 1 8.9922 -0.1802 1.1437 33 1 9.5212 1.4512 -0.8048 34 1 8.5759 0.2745 -1.7479 35 1 6.9181 2.0311 -2.2904 36 1 8.5478 2.5208 -2.8136 37 1 7.3479 4.3719 -1.6418 38 1 8.8183 3.8745 -0.7684 39 1 5.9650 2.9839 -0.1433 40 1 6.9397 4.1286 0.8107 41 1 7.0032 1.8469 1.7952 42 1 8.6144 2.3578 1.2380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836456029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:20 Heat of formation + Delta-G solvation = -57.512971 kcal Electronic energy + Delta-G solvation = -27999.398848 eV Core-core repulsion = 23895.217000 eV Total energy + Delta-G solvation = -4104.181848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.81878 -41.95826 -40.80701 -39.70055 -38.10534 -36.05292 -35.47625 -34.44778 -31.87122 -31.41626 -31.05120 -29.64815 -27.29985 -25.04265 -24.26389 -24.09950 -23.29960 -21.80647 -20.98523 -20.12579 -19.77308 -19.21394 -18.90596 -17.59779 -17.24407 -17.00694 -16.63267 -16.57667 -16.07347 -15.87817 -15.73155 -15.56397 -15.43364 -15.21148 -14.92491 -14.63194 -14.43320 -14.38546 -14.23858 -13.80931 -13.57993 -13.28071 -13.13658 -12.63270 -12.41025 -12.24461 -12.13336 -11.76196 -11.64521 -11.61188 -11.51522 -11.36733 -11.09509 -10.90993 -10.40447 -9.93160 -9.59078 -8.71821 -8.49788 -6.23139 0.18945 0.42263 1.33790 1.39193 1.48542 1.54557 1.95590 2.28685 2.33061 2.67624 2.80249 3.05431 3.40703 3.53079 3.89572 3.90773 3.97698 4.05387 4.17253 4.19656 4.30943 4.33027 4.51321 4.55358 4.61271 4.83450 4.85105 4.89530 4.91263 5.08448 5.13410 5.19636 5.21741 5.27402 5.31014 5.46091 5.49709 5.61971 5.75729 5.79677 5.84141 6.06150 6.18338 6.82235 7.03740 7.44410 7.56195 8.61009 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.005646 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.360879 B = 4958.388758 C = 7401.713917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.222 6.222 10 C 0.134 3.866 11 C -0.252 4.252 12 C 0.112 3.888 13 F -0.147 7.147 14 C -0.187 4.187 15 C -0.065 4.065 16 C 0.094 3.906 17 N -0.653 5.653 18 C 0.729 3.271 19 O -0.607 6.607 20 N -0.572 5.572 21 N -0.328 5.328 22 C 0.041 3.959 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.120 4.120 26 C 0.039 3.961 27 H 0.285 0.715 28 H 0.127 0.873 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.420 0.580 32 H 0.407 0.593 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.008 7.399 -2.412 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.129 6.129 10 C 0.082 3.918 11 C -0.273 4.273 12 C 0.092 3.908 13 F -0.125 7.125 14 C -0.207 4.207 15 C -0.086 4.086 16 C -0.002 4.002 17 N -0.299 5.299 18 C 0.431 3.569 19 O -0.485 6.485 20 N -0.322 5.322 21 N -0.150 5.150 22 C -0.087 4.087 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.089 4.089 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.179 0.821 30 H 0.181 0.819 31 H 0.258 0.742 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.585 6.903 -2.220 20.884 hybrid contribution -0.030 0.760 0.302 0.818 sum 19.555 7.663 -1.918 21.090 Atomic orbital electron populations 1.69744 1.07117 1.29733 1.49346 1.25302 0.95842 1.02305 0.95172 0.85245 0.79219 0.76948 0.79633 1.18457 1.19992 1.17406 1.20645 0.77665 0.96201 1.53010 0.90250 1.83466 1.21438 1.25536 1.82415 1.18703 0.90245 0.85512 0.97347 1.20945 1.01271 0.91276 1.13807 1.17487 0.89876 0.80678 1.02742 1.91427 1.78015 1.48958 1.94132 1.20949 0.90467 1.00490 1.08779 1.21042 1.01453 0.88437 0.97628 1.16958 0.86077 0.87455 1.09759 1.42190 1.16400 1.12807 1.58537 1.15546 0.80472 0.82356 0.78564 1.90890 1.74607 1.34126 1.48876 1.44450 1.19496 1.10553 1.57668 1.62718 1.48554 0.98664 1.05019 1.22669 0.95170 1.00036 0.90792 1.21625 1.01870 0.93686 0.98312 1.21602 1.00645 0.97617 0.95716 1.21649 0.99499 0.96845 0.97892 1.22637 1.01269 0.89369 0.95576 0.90516 0.85491 0.82136 0.81858 0.74208 0.74924 0.92025 0.90525 0.92257 0.88838 0.90606 0.90442 0.92783 0.89230 0.91512 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 13.96 21.61 0.30 -53.19 16 2 C 0.01 0.72 5.49 84.83 0.47 1.18 16 3 Si 0.97 42.32 28.62 68.60 1.96 44.29 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.40 -22.57 9.94 67.91 0.68 -21.89 16 8 H 0.08 4.79 5.44 -2.91 -0.02 4.78 16 9 O -0.22 -11.25 7.99 -22.81 -0.18 -11.43 16 10 C 0.13 6.16 6.66 22.69 0.15 6.31 16 11 C -0.25 -11.44 9.14 22.42 0.20 -11.24 16 12 C 0.11 4.42 7.29 22.37 0.16 4.59 16 13 F -0.15 -5.59 17.26 44.97 0.78 -4.82 16 14 C -0.19 -6.38 10.02 22.34 0.22 -6.15 16 15 C -0.06 -2.32 8.72 22.37 0.19 -2.12 16 16 C 0.09 3.73 6.45 38.22 0.25 3.98 16 17 N -0.65 -23.08 5.25 -316.70 -1.66 -24.74 16 18 C 0.73 23.15 8.47 179.06 1.52 24.67 16 19 O -0.61 -21.97 14.34 -4.03 -0.06 -22.03 16 20 N -0.57 -13.17 4.77 -184.74 -0.88 -14.05 16 21 N -0.33 -6.81 3.83 -514.03 -1.97 -8.78 16 22 C 0.04 0.63 5.83 86.33 0.50 1.14 16 23 C -0.12 -1.64 6.09 30.64 0.19 -1.45 16 24 C -0.12 -1.48 6.00 30.67 0.18 -1.30 16 25 C -0.12 -1.98 6.09 30.65 0.19 -1.80 16 26 C 0.04 0.70 5.83 86.33 0.50 1.20 16 27 H 0.29 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.13 6.27 5.63 -2.91 -0.02 6.26 16 29 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.16 5.52 5.78 -2.91 -0.02 5.50 16 31 H 0.42 14.86 7.40 -92.70 -0.69 14.17 16 32 H 0.41 7.54 8.93 -215.49 -1.92 5.61 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -65.22 350.37 2.17 -63.05 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -1.53 Total: 34.57 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.41 Total: -2.88 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -4.21 Total: -100.75 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.24 Total: -33.46 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.82 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.96 Total: 44.29 kcal Total: -65.22 2.17 -63.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836456029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.539 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds