Wall clock time and date at job start Tue Mar 31 2020 14:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00020 * 2 1 4 4 C 1.50704 * 109.47087 * 289.07497 * 3 2 1 5 5 C 1.38113 * 120.02682 * 264.54690 * 4 3 2 6 6 C 1.38387 * 120.05326 * 179.79184 * 5 4 3 7 7 Cl 1.73594 * 119.94463 * 180.23148 * 6 5 4 8 8 C 1.38437 * 120.11140 * 0.46220 * 6 5 4 9 9 C 1.38068 * 120.05361 * 359.79333 * 8 6 5 10 10 C 1.38859 * 120.02622 * 84.82393 * 4 3 2 11 11 O 1.35764 * 120.05690 * 0.02562 * 10 4 3 12 12 C 1.34823 * 116.99804 * 174.02507 * 11 10 4 13 13 H 1.07994 * 120.00305 * 5.12236 * 12 11 10 14 14 C 1.38648 * 120.00044 * 185.11347 * 12 11 10 15 15 N 1.31556 * 120.00328 * 189.31402 * 14 12 11 16 16 Si 1.86801 * 119.99696 * 9.31510 * 14 12 11 17 17 H 1.48504 * 109.47160 * 94.69808 * 16 14 12 18 18 H 1.48500 * 109.47150 * 214.69539 * 16 14 12 19 19 H 1.48498 * 109.47456 * 334.69727 * 16 14 12 20 20 C 1.46896 * 110.99706 * 123.95170 * 2 1 3 21 21 C 1.53781 * 113.61530 * 56.04756 * 20 2 1 22 22 C 1.53780 * 87.08216 * 139.98002 * 21 20 2 23 23 C 1.53000 * 113.61548 * 89.11946 * 22 21 20 24 24 C 1.52998 * 113.61590 * 219.93566 * 22 21 20 25 25 C 1.53775 * 87.17293 * 334.52464 * 22 21 20 26 26 H 1.09002 * 109.47643 * 304.50206 * 1 2 3 27 27 H 1.09004 * 109.47469 * 64.49964 * 1 2 3 28 28 H 1.09001 * 109.47734 * 184.50001 * 1 2 3 29 29 H 1.09000 * 109.47471 * 49.07659 * 3 2 1 30 30 H 1.09007 * 109.47119 * 169.07337 * 3 2 1 31 31 H 1.07997 * 119.97148 * 0.02562 * 5 4 3 32 32 H 1.07999 * 119.97058 * 179.77149 * 8 6 5 33 33 H 1.08001 * 120.02350 * 179.97438 * 9 8 6 34 34 H 0.97004 * 120.00279 * 180.02562 * 15 14 12 35 35 H 1.09001 * 112.85201 * 284.85063 * 20 2 1 36 36 H 1.09002 * 113.61448 * 25.42759 * 21 20 2 37 37 H 1.09000 * 113.69163 * 254.53784 * 21 20 2 38 38 H 1.09004 * 109.47395 * 181.53240 * 23 22 21 39 39 H 1.09006 * 109.46706 * 301.52288 * 23 22 21 40 40 H 1.09001 * 109.47641 * 61.52715 * 23 22 21 41 41 H 1.09005 * 109.46979 * 298.47336 * 24 22 21 42 42 H 1.08996 * 109.47318 * 58.46605 * 24 22 21 43 43 H 1.09004 * 109.47619 * 178.47345 * 24 22 21 44 44 H 1.09001 * 113.61320 * 140.02461 * 25 22 21 45 45 H 1.08997 * 113.61633 * 270.92724 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7419 2.0068 -1.3428 5 6 2.7259 1.9906 -2.3119 6 6 2.4922 2.5701 -3.5467 7 17 3.7288 2.5428 -4.7647 8 6 1.2756 3.1757 -3.8105 9 6 0.2907 3.1991 -2.8433 10 6 0.5209 2.6140 -1.6049 11 8 -0.4457 2.6366 -0.6518 12 6 -1.5581 3.3476 -0.9251 13 1 -1.6860 3.7973 -1.8985 14 6 -2.5382 3.5011 0.0436 15 7 -3.6987 4.0333 -0.2734 16 14 -2.2105 2.9521 1.7988 17 1 -1.7305 4.1083 2.5976 18 1 -3.4644 2.4252 2.3949 19 1 -1.1763 1.8865 1.7994 20 6 1.9953 -0.7659 1.1376 21 6 1.4814 -2.2141 1.1958 22 6 2.9042 -2.6191 1.6159 23 6 3.1303 -2.5825 3.1287 24 6 3.3851 -3.9223 0.9747 25 6 3.3962 -1.3566 0.8888 26 1 -0.3634 0.5821 0.8469 27 1 -0.3634 0.4424 -0.9276 28 1 -0.3634 -1.0245 0.0806 29 1 1.4972 1.9519 0.7765 30 1 3.0677 1.3490 0.1948 31 1 3.6771 1.5220 -2.1071 32 1 1.0970 3.6305 -4.7737 33 1 -0.6581 3.6721 -3.0495 34 1 -4.3843 4.1411 0.4045 35 1 1.9067 -0.2328 2.0842 36 1 1.1830 -2.6109 0.2254 37 1 0.7329 -2.3825 1.9702 38 1 4.1630 -2.8536 3.3484 39 1 2.9313 -1.5778 3.5016 40 1 2.4579 -3.2900 3.6139 41 1 2.7336 -4.7404 1.2820 42 1 3.3584 -3.8247 -0.1106 43 1 4.4057 -4.1303 1.2958 44 1 4.1929 -0.8317 1.4159 45 1 3.6204 -1.5193 -0.1654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839193527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:37 Heat of formation + Delta-G solvation = 8.451375 kcal Electronic energy + Delta-G solvation = -25816.472949 eV Core-core repulsion = 22247.028248 eV Total energy + Delta-G solvation = -3569.444701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06633 -39.38481 -36.98539 -35.99069 -35.32410 -32.51725 -31.34229 -29.66690 -28.96226 -27.53803 -27.02590 -25.43798 -25.08467 -24.06563 -21.62039 -20.99401 -20.11620 -18.26400 -18.03187 -17.31051 -15.90411 -15.58839 -15.26885 -15.11917 -14.67213 -14.44806 -14.08775 -13.91088 -13.74770 -13.43363 -13.13696 -12.89595 -12.75230 -12.66651 -12.49890 -12.44298 -12.07487 -11.86222 -11.71579 -11.56751 -11.31573 -11.18939 -11.10582 -10.85953 -10.76078 -10.58642 -10.51772 -10.39211 -10.15631 -10.03565 -9.97021 -9.53886 -8.92151 -8.37362 -7.87845 -7.37818 -6.54927 -4.19624 1.88386 1.98647 2.75437 3.10510 3.16057 3.25036 4.09430 4.11745 4.42945 4.50711 4.65144 4.69380 4.81896 4.86518 4.97434 5.19374 5.30047 5.41955 5.44689 5.51442 5.58338 5.67679 5.68794 5.76845 5.78002 5.84602 5.90698 5.92993 5.94085 6.07950 6.08734 6.10235 6.11669 6.27731 6.31585 6.43163 6.53120 6.57873 6.73854 6.83538 6.88047 7.06010 7.36124 7.44256 7.52735 7.65728 7.88674 8.80728 9.40047 10.52214 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.005752 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.810063 B = 4866.797876 C = 8092.988975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.523 5.523 3 C 0.112 3.888 4 C -0.138 4.138 5 C -0.048 4.048 6 C -0.116 4.116 7 Cl -0.105 7.105 8 C -0.063 4.063 9 C -0.212 4.212 10 C 0.168 3.832 11 O -0.202 6.202 12 C -0.392 4.392 13 H 0.107 0.893 14 C 0.070 3.930 15 N -0.871 5.871 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.248 1.248 20 C 0.053 3.947 21 C -0.120 4.120 22 C -0.092 4.092 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.115 4.115 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.280 0.720 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.367 -10.068 2.380 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.246 5.246 3 C -0.015 4.015 4 C -0.141 4.141 5 C -0.068 4.068 6 C -0.143 4.143 7 Cl -0.076 7.076 8 C -0.082 4.082 9 C -0.231 4.231 10 C 0.114 3.886 11 O -0.106 6.106 12 C -0.467 4.467 13 H 0.124 0.876 14 C -0.135 4.135 15 N -0.508 5.508 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.055 4.055 21 C -0.158 4.158 22 C -0.092 4.092 23 C -0.185 4.185 24 C -0.189 4.189 25 C -0.153 4.153 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.354 -10.326 2.171 16.247 hybrid contribution -0.394 0.494 1.205 1.360 sum 11.960 -9.832 3.376 15.846 Atomic orbital electron populations 1.22616 0.86426 1.00440 1.03238 1.62359 1.08691 1.13112 1.40483 1.20678 0.99160 0.88011 0.93647 1.18698 0.92270 1.06033 0.97052 1.20358 0.98500 0.97312 0.90600 1.20362 0.91385 1.11188 0.91346 1.98285 1.55006 1.98049 1.56284 1.20684 0.91326 0.97302 0.98915 1.21197 1.01084 1.07203 0.93663 1.18951 0.87888 0.93087 0.88661 1.83695 1.25087 1.62554 1.39234 1.20760 0.92673 1.31222 1.02046 0.87587 1.24432 0.93793 0.95805 0.99447 1.69656 1.03708 1.42190 1.35229 0.86456 0.78672 0.80009 0.83118 1.20135 1.20733 1.17223 1.23138 0.96371 0.93411 0.92623 1.23112 0.95609 0.95278 1.01757 1.21680 0.97078 0.95217 0.95263 1.21597 1.01341 1.01802 0.93752 1.21688 1.00474 0.96229 1.00511 1.23152 0.95770 0.95331 1.01032 0.94301 0.90211 0.92747 0.93709 0.90990 0.85926 0.86266 0.84154 0.90930 0.92257 0.89219 0.91997 0.92561 0.92535 0.92582 0.92878 0.92345 0.92925 0.92093 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.06 60.06 0.48 0.85 16 2 N -0.52 -8.49 4.68 -235.18 -1.10 -9.59 16 3 C 0.11 1.90 4.95 -4.98 -0.02 1.88 16 4 C -0.14 -2.57 5.15 -104.44 -0.54 -3.11 16 5 C -0.05 -0.82 9.46 -39.57 -0.37 -1.19 16 6 C -0.12 -1.98 6.32 -39.45 -0.25 -2.23 16 7 Cl -0.10 -1.57 28.95 -51.86 -1.50 -3.07 16 8 C -0.06 -1.12 9.82 -39.57 -0.39 -1.51 16 9 C -0.21 -4.30 9.16 -39.40 -0.36 -4.66 16 10 C 0.17 3.55 5.56 -39.11 -0.22 3.33 16 11 O -0.20 -4.74 5.29 0.03 0.00 -4.74 16 12 C -0.39 -10.17 9.92 30.88 0.31 -9.87 16 13 H 0.11 2.85 5.44 -52.49 -0.29 2.56 16 14 C 0.07 1.83 5.49 -17.52 -0.10 1.74 16 15 N -0.87 -23.99 13.96 55.48 0.77 -23.22 16 16 Si 0.89 20.17 28.64 -169.99 -4.87 15.30 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.25 -5.43 4.87 56.52 0.28 -5.15 16 20 C 0.05 0.72 2.82 -66.76 -0.19 0.53 16 21 C -0.12 -1.44 5.61 -25.92 -0.15 -1.59 16 22 C -0.09 -0.94 1.39 -153.70 -0.21 -1.16 16 23 C -0.13 -1.18 9.07 37.16 0.34 -0.84 16 24 C -0.13 -1.20 9.18 37.16 0.34 -0.86 16 25 C -0.11 -1.32 6.78 -25.78 -0.17 -1.50 16 26 H 0.04 0.78 5.56 -51.93 -0.29 0.49 16 27 H 0.08 1.64 5.75 -51.93 -0.30 1.34 16 28 H 0.05 0.88 6.77 -51.93 -0.35 0.53 16 29 H 0.04 0.84 7.55 -51.93 -0.39 0.45 16 30 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.14 2.96 5.64 -52.49 -0.30 2.67 16 34 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.06 0.84 7.64 -51.93 -0.40 0.44 16 36 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 37 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.54 7.33 -51.93 -0.38 0.16 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.55 7.98 -51.93 -0.41 0.14 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 45 H 0.09 1.10 7.99 -51.93 -0.41 0.69 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -25.96 365.82 -9.65 -35.61 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.97 Total: 4.37 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.50 Total: -20.18 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: -0.33 Total: -32.81 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.87 Total: 15.30 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.96 -9.65 -35.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839193527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.063 kcal (2) G-P(sol) polarization free energy of solvation -25.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds