Wall clock time and date at job start Tue Mar 31 2020 14:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00020 * 2 1 4 4 C 1.50704 * 109.47087 * 289.07497 * 3 2 1 5 5 C 1.38113 * 120.02682 * 264.54690 * 4 3 2 6 6 C 1.38387 * 120.05326 * 179.79184 * 5 4 3 7 7 Cl 1.73594 * 119.94463 * 180.23148 * 6 5 4 8 8 C 1.38437 * 120.11140 * 0.46220 * 6 5 4 9 9 C 1.38068 * 120.05361 * 359.79333 * 8 6 5 10 10 C 1.38859 * 120.02622 * 84.82393 * 4 3 2 11 11 O 1.35764 * 120.05690 * 0.02562 * 10 4 3 12 12 C 1.34823 * 116.99804 * 174.02507 * 11 10 4 13 13 H 1.07994 * 120.00305 * 5.12236 * 12 11 10 14 14 C 1.38648 * 120.00044 * 185.11347 * 12 11 10 15 15 N 1.31556 * 120.00328 * 189.31402 * 14 12 11 16 16 Si 1.86801 * 119.99696 * 9.31510 * 14 12 11 17 17 H 1.48504 * 109.47160 * 94.69808 * 16 14 12 18 18 H 1.48500 * 109.47150 * 214.69539 * 16 14 12 19 19 H 1.48498 * 109.47456 * 334.69727 * 16 14 12 20 20 C 1.46896 * 110.99706 * 123.95170 * 2 1 3 21 21 C 1.53781 * 113.61530 * 56.04756 * 20 2 1 22 22 C 1.53780 * 87.08216 * 139.98002 * 21 20 2 23 23 C 1.53000 * 113.61548 * 89.11946 * 22 21 20 24 24 C 1.52998 * 113.61590 * 219.93566 * 22 21 20 25 25 C 1.53775 * 87.17293 * 334.52464 * 22 21 20 26 26 H 1.09002 * 109.47643 * 304.50206 * 1 2 3 27 27 H 1.09004 * 109.47469 * 64.49964 * 1 2 3 28 28 H 1.09001 * 109.47734 * 184.50001 * 1 2 3 29 29 H 1.09000 * 109.47471 * 49.07659 * 3 2 1 30 30 H 1.09007 * 109.47119 * 169.07337 * 3 2 1 31 31 H 1.07997 * 119.97148 * 0.02562 * 5 4 3 32 32 H 1.07999 * 119.97058 * 179.77149 * 8 6 5 33 33 H 1.08001 * 120.02350 * 179.97438 * 9 8 6 34 34 H 0.97004 * 120.00279 * 180.02562 * 15 14 12 35 35 H 1.09001 * 112.85201 * 284.85063 * 20 2 1 36 36 H 1.09002 * 113.61448 * 25.42759 * 21 20 2 37 37 H 1.09000 * 113.69163 * 254.53784 * 21 20 2 38 38 H 1.09004 * 109.47395 * 181.53240 * 23 22 21 39 39 H 1.09006 * 109.46706 * 301.52288 * 23 22 21 40 40 H 1.09001 * 109.47641 * 61.52715 * 23 22 21 41 41 H 1.09005 * 109.46979 * 298.47336 * 24 22 21 42 42 H 1.08996 * 109.47318 * 58.46605 * 24 22 21 43 43 H 1.09004 * 109.47619 * 178.47345 * 24 22 21 44 44 H 1.09001 * 113.61320 * 140.02461 * 25 22 21 45 45 H 1.08997 * 113.61633 * 270.92724 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7419 2.0068 -1.3428 5 6 2.7259 1.9906 -2.3119 6 6 2.4922 2.5701 -3.5467 7 17 3.7288 2.5428 -4.7647 8 6 1.2756 3.1757 -3.8105 9 6 0.2907 3.1991 -2.8433 10 6 0.5209 2.6140 -1.6049 11 8 -0.4457 2.6366 -0.6518 12 6 -1.5581 3.3476 -0.9251 13 1 -1.6860 3.7973 -1.8985 14 6 -2.5382 3.5011 0.0436 15 7 -3.6987 4.0333 -0.2734 16 14 -2.2105 2.9521 1.7988 17 1 -1.7305 4.1083 2.5976 18 1 -3.4644 2.4252 2.3949 19 1 -1.1763 1.8865 1.7994 20 6 1.9953 -0.7659 1.1376 21 6 1.4814 -2.2141 1.1958 22 6 2.9042 -2.6191 1.6159 23 6 3.1303 -2.5825 3.1287 24 6 3.3851 -3.9223 0.9747 25 6 3.3962 -1.3566 0.8888 26 1 -0.3634 0.5821 0.8469 27 1 -0.3634 0.4424 -0.9276 28 1 -0.3634 -1.0245 0.0806 29 1 1.4972 1.9519 0.7765 30 1 3.0677 1.3490 0.1948 31 1 3.6771 1.5220 -2.1071 32 1 1.0970 3.6305 -4.7737 33 1 -0.6581 3.6721 -3.0495 34 1 -4.3843 4.1411 0.4045 35 1 1.9067 -0.2328 2.0842 36 1 1.1830 -2.6109 0.2254 37 1 0.7329 -2.3825 1.9702 38 1 4.1630 -2.8536 3.3484 39 1 2.9313 -1.5778 3.5016 40 1 2.4579 -3.2900 3.6139 41 1 2.7336 -4.7404 1.2820 42 1 3.3584 -3.8247 -0.1106 43 1 4.4057 -4.1303 1.2958 44 1 4.1929 -0.8317 1.4159 45 1 3.6204 -1.5193 -0.1654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839193527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:36 Heat of formation + Delta-G solvation = -3.709995 kcal Electronic energy + Delta-G solvation = -25817.000305 eV Core-core repulsion = 22247.028248 eV Total energy + Delta-G solvation = -3569.972058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37682 -40.64939 -38.56807 -37.30733 -36.65056 -34.45869 -32.71199 -30.83056 -30.36178 -28.41324 -28.22957 -27.20463 -26.21324 -25.35909 -23.21837 -22.36125 -21.34327 -19.87447 -19.18920 -18.93582 -17.15178 -17.06022 -16.80641 -16.38681 -15.99971 -15.90390 -15.47931 -15.27637 -15.05880 -14.63916 -14.43027 -14.23424 -14.12995 -13.96123 -13.87174 -13.62370 -13.51462 -12.99959 -12.89018 -12.82110 -12.65513 -12.53571 -12.43254 -12.25336 -11.96180 -11.88957 -11.79553 -11.66935 -11.54200 -11.36263 -10.96967 -10.88710 -10.82839 -9.84859 -9.24757 -8.95976 -8.52081 -6.20890 0.37846 0.45515 1.28694 1.30688 1.34182 1.46617 2.23363 2.59961 2.95858 3.03018 3.25387 3.57207 3.74563 3.80565 3.91494 3.93890 3.99277 4.24833 4.28022 4.40101 4.46304 4.54091 4.58955 4.68139 4.71532 4.82613 4.83734 4.85101 4.94989 4.98552 5.01100 5.06299 5.07504 5.18795 5.21785 5.25632 5.27302 5.29087 5.36945 5.49121 5.58114 5.65513 5.71675 5.74462 6.04838 6.08427 6.30572 6.83992 7.55121 8.59038 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.005752 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.810063 B = 4866.797876 C = 8092.988975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.520 5.520 3 C 0.114 3.886 4 C -0.134 4.134 5 C -0.043 4.043 6 C -0.104 4.104 7 Cl -0.075 7.075 8 C -0.064 4.064 9 C -0.226 4.226 10 C 0.141 3.859 11 O -0.217 6.217 12 C -0.394 4.394 13 H 0.082 0.918 14 C 0.021 3.979 15 N -0.918 5.918 16 Si 0.948 3.052 17 H -0.274 1.274 18 H -0.276 1.276 19 H -0.241 1.241 20 C 0.042 3.958 21 C -0.121 4.121 22 C -0.081 4.081 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.107 4.107 26 H 0.017 0.983 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.283 0.717 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.836 -11.961 2.684 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.244 5.244 3 C -0.013 4.013 4 C -0.136 4.136 5 C -0.062 4.062 6 C -0.131 4.131 7 Cl -0.046 7.046 8 C -0.083 4.083 9 C -0.245 4.245 10 C 0.090 3.910 11 O -0.123 6.123 12 C -0.470 4.470 13 H 0.100 0.900 14 C -0.178 4.178 15 N -0.558 5.558 16 Si 0.772 3.228 17 H -0.199 1.199 18 H -0.201 1.201 19 H -0.165 1.165 20 C -0.066 4.066 21 C -0.159 4.159 22 C -0.082 4.082 23 C -0.184 4.184 24 C -0.187 4.187 25 C -0.145 4.145 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.119 0.881 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.873 -12.235 2.449 20.191 hybrid contribution -1.204 1.046 0.859 1.812 sum 14.670 -11.189 3.308 18.744 Atomic orbital electron populations 1.22412 0.87958 1.00601 1.00700 1.62379 1.07261 1.12727 1.42024 1.20701 1.00590 0.88032 0.91967 1.19000 0.91384 1.04903 0.98308 1.20686 0.99088 0.96554 0.89915 1.20548 0.91543 1.08993 0.91995 1.98305 1.53447 1.97850 1.55000 1.20872 0.91068 0.97180 0.99165 1.21199 1.01234 1.07720 0.94395 1.19403 0.88665 0.94226 0.88703 1.83678 1.25031 1.63535 1.40018 1.20662 0.93854 1.31230 1.01235 0.90025 1.25106 0.93546 0.96267 1.02927 1.69740 1.04762 1.44870 1.36434 0.85598 0.78772 0.79741 0.78722 1.19949 1.20093 1.16510 1.23324 0.98232 0.93581 0.91418 1.23125 0.97012 0.94236 1.01532 1.21648 0.95218 0.95353 0.95984 1.21605 1.02381 1.01667 0.92780 1.21670 1.01294 0.95598 1.00134 1.23111 0.94541 0.95631 1.01178 0.96450 0.93099 0.91164 0.95881 0.88085 0.82838 0.84132 0.86131 0.90727 0.92711 0.89909 0.91999 0.91181 0.93159 0.92059 0.92367 0.92783 0.91678 0.90926 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 8.06 127.69 1.03 2.17 16 2 N -0.52 -16.30 4.68 -897.96 -4.20 -20.50 16 3 C 0.11 3.73 4.95 85.56 0.42 4.15 16 4 C -0.13 -4.84 5.15 -19.74 -0.10 -4.94 16 5 C -0.04 -1.34 9.46 22.28 0.21 -1.13 16 6 C -0.10 -3.26 6.32 22.35 0.14 -3.12 16 7 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.04 16 8 C -0.06 -2.21 9.82 22.28 0.22 -1.99 16 9 C -0.23 -9.42 9.16 22.39 0.21 -9.22 16 10 C 0.14 6.10 5.56 22.58 0.13 6.22 16 11 O -0.22 -10.61 5.29 -22.83 -0.12 -10.73 16 12 C -0.39 -21.65 9.92 67.92 0.67 -20.98 16 13 H 0.08 4.75 5.44 -2.91 -0.02 4.74 16 14 C 0.02 1.15 5.49 84.83 0.47 1.62 16 15 N -0.92 -53.14 13.96 21.61 0.30 -52.84 16 16 Si 0.95 43.07 28.64 68.60 1.96 45.04 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.24 -10.56 4.87 99.48 0.48 -10.07 16 20 C 0.04 1.07 2.82 45.54 0.13 1.20 16 21 C -0.12 -2.70 5.61 31.12 0.17 -2.53 16 22 C -0.08 -1.44 1.39 -51.66 -0.07 -1.51 16 23 C -0.13 -1.97 9.07 71.98 0.65 -1.31 16 24 C -0.13 -1.97 9.18 71.98 0.66 -1.31 16 25 C -0.11 -2.13 6.78 31.21 0.21 -1.92 16 26 H 0.02 0.70 5.56 -2.39 -0.01 0.69 16 27 H 0.05 2.15 5.75 -2.39 -0.01 2.14 16 28 H 0.07 2.27 6.77 -2.39 -0.02 2.26 16 29 H 0.02 0.86 7.55 -2.39 -0.02 0.84 16 30 H 0.10 2.68 7.73 -2.38 -0.02 2.66 16 31 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 34 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.06 1.46 7.64 -2.39 -0.02 1.45 16 36 H 0.08 1.96 7.88 -2.39 -0.02 1.95 16 37 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.05 0.84 7.33 -2.38 -0.02 0.83 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 42 H 0.05 0.87 7.98 -2.39 -0.02 0.85 16 43 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 45 H 0.09 1.83 7.99 -2.39 -0.02 1.81 16 Total: -1.00 -58.32 365.82 3.78 -54.54 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.76 Total: 21.12 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 5.15 Total: -34.59 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -3.90 Total: -73.34 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.12 Total: -10.73 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.96 Total: 45.04 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -58.32 3.78 -54.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839193527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.830 kcal (2) G-P(sol) polarization free energy of solvation -58.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds