Wall clock time and date at job start Tue Mar 31 2020 14:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48495 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47091 * 300.00219 * 3 2 1 6 6 H 1.48498 * 109.46948 * 60.00175 * 3 2 1 7 7 C 1.38636 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99784 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99667 * 174.48316 * 9 7 2 11 11 C 1.38734 * 120.08642 * 354.11586 * 10 9 7 12 12 C 1.38349 * 119.97674 * 180.23679 * 11 10 9 13 13 F 1.35101 * 119.92176 * 180.02562 * 12 11 10 14 14 C 1.38538 * 120.15171 * 0.06685 * 12 11 10 15 15 C 1.38202 * 120.17295 * 359.95514 * 14 12 11 16 16 C 1.38687 * 120.02342 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07726 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99926 * 33.98186 * 17 16 15 19 19 O 1.21591 * 120.00052 * 5.66999 * 18 17 16 20 20 N 1.34780 * 119.99977 * 185.66103 * 18 17 16 21 21 C 1.46500 * 120.00121 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.50244 * 325.00239 * 21 20 18 23 23 C 1.53119 * 109.50540 * 204.92774 * 21 20 18 24 24 C 1.53119 * 109.15865 * 182.44917 * 23 21 20 25 25 C 1.53034 * 109.31634 * 57.59172 * 24 23 21 26 26 N 1.46853 * 109.52137 * 300.84242 * 25 24 23 27 27 C 1.46847 * 111.19672 * 61.73893 * 26 25 24 28 28 H 0.96993 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01353 * 0.26277 * 11 10 9 30 30 H 1.08001 * 119.91417 * 179.97438 * 14 12 11 31 31 H 1.08002 * 119.98610 * 180.02562 * 15 14 12 32 32 H 0.97004 * 120.00111 * 213.98668 * 17 16 15 33 33 H 0.97003 * 119.99864 * 0.02562 * 20 18 17 34 34 H 1.09009 * 109.51999 * 302.31174 * 23 21 20 35 35 H 1.08995 * 109.52506 * 62.49381 * 23 21 20 36 36 H 1.09001 * 109.46695 * 297.64725 * 24 23 21 37 37 H 1.09004 * 109.53787 * 177.57470 * 24 23 21 38 38 H 1.08993 * 109.46549 * 180.83140 * 25 24 23 39 39 H 1.09003 * 109.46349 * 60.85584 * 25 24 23 40 40 H 1.00896 * 110.99966 * 185.83094 * 26 25 24 41 41 H 1.09001 * 109.46182 * 178.23752 * 27 26 25 42 42 H 1.09002 * 109.45263 * 58.27112 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0696 -3.5040 -0.1174 11 6 3.4349 -3.4282 -0.3521 12 6 4.1804 -4.5870 -0.4756 13 9 5.5099 -4.5119 -0.7037 14 6 3.5666 -5.8242 -0.3669 15 6 2.2070 -5.9070 -0.1336 16 6 1.4527 -4.7500 -0.0082 17 7 0.0741 -4.8326 0.2289 18 6 -0.4217 -5.8361 0.9795 19 8 0.3338 -6.6097 1.5358 20 7 -1.7548 -5.9822 1.1138 21 6 -2.2936 -7.0728 1.9302 22 1 -1.6543 -7.9502 1.8331 23 6 -3.7083 -7.4161 1.4553 24 6 -4.2869 -8.5140 2.3522 25 6 -4.2793 -8.0363 3.8060 26 7 -2.9034 -7.7220 4.2121 27 6 -2.3438 -6.6369 3.3963 28 1 -0.4850 0.8400 0.0004 29 1 3.9156 -2.4649 -0.4379 30 1 4.1522 -6.7264 -0.4644 31 1 1.7316 -6.8731 -0.0490 32 1 -0.5235 -4.1674 -0.1473 33 1 -2.3574 -5.3653 0.6698 34 1 -4.3380 -6.5283 1.5149 35 1 -3.6710 -7.7687 0.4246 36 1 -3.6794 -9.4146 2.2618 37 1 -5.3100 -8.7330 2.0464 38 1 -4.6770 -8.8218 4.4485 39 1 -4.8980 -7.1437 3.8983 40 1 -2.8591 -7.4956 5.1944 41 1 -1.3359 -6.4059 3.7412 42 1 -2.9717 -5.7509 3.4905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841146194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:08 Heat of formation + Delta-G solvation = -74.243875 kcal Electronic energy + Delta-G solvation = -27092.622531 eV Core-core repulsion = 22987.715177 eV Total energy + Delta-G solvation = -4104.907355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.22645 -40.36051 -39.15637 -38.18650 -36.36277 -34.32595 -34.00316 -32.40478 -31.97119 -29.85245 -29.30669 -27.80608 -25.49814 -23.98973 -23.36653 -22.27174 -21.54307 -20.42197 -20.06857 -18.33254 -18.16891 -17.67723 -17.11568 -16.41668 -15.61520 -15.27600 -15.15080 -14.95527 -14.88738 -14.62059 -14.28282 -14.11063 -13.93209 -13.87959 -13.56941 -13.50020 -13.25702 -13.06314 -12.74043 -12.35172 -12.12104 -11.73042 -11.61887 -11.38747 -11.18973 -11.03212 -10.89689 -10.71110 -10.64803 -10.51704 -9.87834 -9.77518 -9.46865 -9.03633 -8.96191 -8.62266 -7.86285 -7.06935 -6.60697 -4.17851 1.86841 2.14022 2.86231 3.05479 3.08039 3.13319 3.47151 3.84881 4.05139 4.36881 4.46621 4.58596 4.68118 4.75635 4.88430 4.95666 5.05772 5.13404 5.18559 5.31979 5.42620 5.45461 5.59104 5.62919 5.72954 5.76252 5.82195 6.01130 6.05446 6.09592 6.23980 6.52183 6.57894 6.70592 6.86400 6.93299 6.94129 7.08977 7.14981 7.17109 7.32569 7.67622 7.84081 8.28298 8.85155 8.88893 9.47841 10.56690 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003451 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.176257 B = 8110.584596 C = 9980.501148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.157 3.843 11 C -0.257 4.257 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.226 4.226 15 C -0.050 4.050 16 C 0.082 3.918 17 N -0.666 5.666 18 C 0.704 3.296 19 O -0.581 6.581 20 N -0.743 5.743 21 C 0.170 3.830 22 H 0.097 0.903 23 C -0.129 4.129 24 C -0.113 4.113 25 C 0.054 3.946 26 N -0.687 5.687 27 C 0.046 3.954 28 H 0.271 0.729 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.411 0.589 33 H 0.397 0.603 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.345 0.655 41 H 0.083 0.917 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 -11.484 2.642 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.101 3.899 11 C -0.278 4.278 12 C 0.107 3.893 13 F -0.131 7.131 14 C -0.246 4.246 15 C -0.071 4.071 16 C -0.013 4.013 17 N -0.313 5.313 18 C 0.404 3.596 19 O -0.458 6.458 20 N -0.399 5.399 21 C 0.064 3.936 22 H 0.115 0.885 23 C -0.168 4.168 24 C -0.152 4.152 25 C -0.076 4.076 26 N -0.318 5.318 27 C -0.085 4.085 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.246 0.754 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.083 -12.469 2.784 15.118 hybrid contribution -0.316 2.434 0.000 2.455 sum -8.399 -10.035 2.784 13.379 Atomic orbital electron populations 1.70016 1.05932 1.27815 1.45758 1.25275 0.95902 0.98832 0.96220 0.85622 0.79327 0.80099 0.78322 1.18934 1.20041 1.20069 1.21387 0.91995 0.80438 1.52782 0.88823 1.83936 1.33855 1.11296 1.78190 1.18809 0.89509 0.86989 0.94620 1.20856 0.94128 0.98369 1.14455 1.17440 0.76679 0.94254 1.00925 1.91409 1.32026 1.97356 1.92259 1.20452 0.95194 0.95633 1.13332 1.20490 0.92634 0.97070 0.96890 1.16607 0.82596 0.90990 1.11069 1.42233 1.06624 1.29217 1.53204 1.15895 0.82318 0.81966 0.79375 1.90913 1.57108 1.46191 1.51616 1.45118 1.05304 1.34414 1.55026 1.20693 0.94418 0.89891 0.88625 0.88500 1.21879 0.95333 0.99419 1.00131 1.21525 1.01021 0.98721 0.93897 1.21972 0.89179 0.99553 0.96862 1.60165 1.20204 1.43593 1.07873 1.22362 1.00541 0.91558 0.94039 0.91946 0.83976 0.85939 0.84587 0.75354 0.76944 0.91658 0.90900 0.90727 0.91109 0.90692 0.95222 0.83647 0.89869 0.95046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.43 13.67 55.48 0.76 -22.68 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.31 9.44 30.88 0.29 -10.02 16 8 H 0.09 2.35 5.30 -52.49 -0.28 2.07 16 9 O -0.17 -4.44 9.30 0.01 0.00 -4.44 16 10 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 11 C -0.26 -5.66 9.11 -39.36 -0.36 -6.02 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 13 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 14 C -0.23 -4.24 10.02 -39.48 -0.40 -4.64 16 15 C -0.05 -0.97 8.65 -39.43 -0.34 -1.31 16 16 C 0.08 1.72 6.29 -83.44 -0.52 1.19 16 17 N -0.67 -12.29 5.21 -14.07 -0.07 -12.36 16 18 C 0.70 12.26 8.26 -86.92 -0.72 11.54 16 19 O -0.58 -11.81 13.76 5.29 0.07 -11.74 16 20 N -0.74 -9.77 5.08 -58.60 -0.30 -10.07 16 21 C 0.17 2.03 2.62 -67.85 -0.18 1.85 16 22 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 23 C -0.13 -1.15 5.48 -26.61 -0.15 -1.29 16 24 C -0.11 -0.89 6.09 -26.65 -0.16 -1.05 16 25 C 0.05 0.44 6.55 -3.83 -0.03 0.41 16 26 N -0.69 -6.98 6.85 -113.81 -0.78 -7.76 16 27 C 0.05 0.55 6.13 -3.83 -0.02 0.53 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.14 3.13 5.71 -52.49 -0.30 2.83 16 30 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.14 2.56 6.48 -52.49 -0.34 2.22 16 32 H 0.41 7.19 8.57 -40.82 -0.35 6.84 16 33 H 0.40 4.34 8.62 -40.82 -0.35 3.98 16 34 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.35 3.01 8.90 -39.29 -0.35 2.66 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -30.29 352.74 -8.51 -38.81 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.30 Total: 15.24 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.22 Total: -2.16 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.39 Total: -52.86 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.29 -8.51 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.439 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds