Wall clock time and date at job start Tue Mar 31 2020 14:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48495 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47091 * 300.00219 * 3 2 1 6 6 H 1.48498 * 109.46948 * 60.00175 * 3 2 1 7 7 C 1.38636 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99784 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99622 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99667 * 174.48316 * 9 7 2 11 11 C 1.38734 * 120.08642 * 354.11586 * 10 9 7 12 12 C 1.38349 * 119.97674 * 180.23679 * 11 10 9 13 13 F 1.35101 * 119.92176 * 180.02562 * 12 11 10 14 14 C 1.38538 * 120.15171 * 0.06685 * 12 11 10 15 15 C 1.38202 * 120.17295 * 359.95514 * 14 12 11 16 16 C 1.38687 * 120.02342 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07726 * 180.02562 * 16 15 14 18 18 C 1.34773 * 119.99926 * 33.98186 * 17 16 15 19 19 O 1.21591 * 120.00052 * 5.66999 * 18 17 16 20 20 N 1.34780 * 119.99977 * 185.66103 * 18 17 16 21 21 C 1.46500 * 120.00121 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.50244 * 325.00239 * 21 20 18 23 23 C 1.53119 * 109.50540 * 204.92774 * 21 20 18 24 24 C 1.53119 * 109.15865 * 182.44917 * 23 21 20 25 25 C 1.53034 * 109.31634 * 57.59172 * 24 23 21 26 26 N 1.46853 * 109.52137 * 300.84242 * 25 24 23 27 27 C 1.46847 * 111.19672 * 61.73893 * 26 25 24 28 28 H 0.96993 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01353 * 0.26277 * 11 10 9 30 30 H 1.08001 * 119.91417 * 179.97438 * 14 12 11 31 31 H 1.08002 * 119.98610 * 180.02562 * 15 14 12 32 32 H 0.97004 * 120.00111 * 213.98668 * 17 16 15 33 33 H 0.97003 * 119.99864 * 0.02562 * 20 18 17 34 34 H 1.09009 * 109.51999 * 302.31174 * 23 21 20 35 35 H 1.08995 * 109.52506 * 62.49381 * 23 21 20 36 36 H 1.09001 * 109.46695 * 297.64725 * 24 23 21 37 37 H 1.09004 * 109.53787 * 177.57470 * 24 23 21 38 38 H 1.08993 * 109.46549 * 180.83140 * 25 24 23 39 39 H 1.09003 * 109.46349 * 60.85584 * 25 24 23 40 40 H 1.00896 * 110.99966 * 185.83094 * 26 25 24 41 41 H 1.09001 * 109.46182 * 178.23752 * 27 26 25 42 42 H 1.09002 * 109.45263 * 58.27112 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0696 -3.5040 -0.1174 11 6 3.4349 -3.4282 -0.3521 12 6 4.1804 -4.5870 -0.4756 13 9 5.5099 -4.5119 -0.7037 14 6 3.5666 -5.8242 -0.3669 15 6 2.2070 -5.9070 -0.1336 16 6 1.4527 -4.7500 -0.0082 17 7 0.0741 -4.8326 0.2289 18 6 -0.4217 -5.8361 0.9795 19 8 0.3338 -6.6097 1.5358 20 7 -1.7548 -5.9822 1.1138 21 6 -2.2936 -7.0728 1.9302 22 1 -1.6543 -7.9502 1.8331 23 6 -3.7083 -7.4161 1.4553 24 6 -4.2869 -8.5140 2.3522 25 6 -4.2793 -8.0363 3.8060 26 7 -2.9034 -7.7220 4.2121 27 6 -2.3438 -6.6369 3.3963 28 1 -0.4850 0.8400 0.0004 29 1 3.9156 -2.4649 -0.4379 30 1 4.1522 -6.7264 -0.4644 31 1 1.7316 -6.8731 -0.0490 32 1 -0.5235 -4.1674 -0.1473 33 1 -2.3574 -5.3653 0.6698 34 1 -4.3380 -6.5283 1.5149 35 1 -3.6710 -7.7687 0.4246 36 1 -3.6794 -9.4146 2.2618 37 1 -5.3100 -8.7330 2.0464 38 1 -4.6770 -8.8218 4.4485 39 1 -4.8980 -7.1437 3.8983 40 1 -2.8591 -7.4956 5.1944 41 1 -1.3359 -6.4059 3.7412 42 1 -2.9717 -5.7509 3.4905 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841146194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:07 Heat of formation + Delta-G solvation = -96.061419 kcal Electronic energy + Delta-G solvation = -27093.568611 eV Core-core repulsion = 22987.715177 eV Total energy + Delta-G solvation = -4105.853434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.82153 -41.80558 -40.61340 -39.34848 -38.02607 -35.54720 -35.46419 -34.31087 -32.75828 -31.19628 -30.78564 -29.26446 -27.38731 -24.80036 -24.58443 -23.76269 -23.01260 -21.78250 -20.99193 -20.14319 -19.66838 -19.14293 -18.43706 -17.60918 -17.20515 -16.96842 -16.57189 -16.38747 -16.12098 -15.94547 -15.59984 -15.41073 -15.30901 -15.24753 -14.94070 -14.75006 -14.73192 -14.03311 -13.97101 -13.76978 -13.50923 -13.39193 -13.06049 -12.64836 -12.58710 -12.33091 -12.13163 -11.88741 -11.69410 -11.66853 -11.51853 -11.33137 -11.04940 -10.83287 -10.20481 -9.55627 -9.43803 -8.72997 -8.51898 -6.17235 0.21044 0.46606 1.36912 1.42417 1.52710 1.56891 2.03195 2.13692 2.68545 3.04946 3.05446 3.17651 3.41070 3.46013 3.72929 3.87674 3.94361 4.04701 4.16910 4.26452 4.28017 4.36044 4.59332 4.60409 4.68897 4.70746 4.85402 4.92899 4.96255 5.01747 5.07129 5.21182 5.22504 5.27559 5.33656 5.35197 5.48103 5.57483 5.90033 5.93639 6.04900 6.08199 6.41506 6.93160 6.94771 7.46766 7.63269 8.69070 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003451 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.176257 B = 8110.584596 C = 9980.501148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.011 2.989 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.414 4.414 8 H 0.098 0.902 9 O -0.203 6.203 10 C 0.130 3.870 11 C -0.263 4.263 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.201 4.201 15 C -0.051 4.051 16 C 0.083 3.917 17 N -0.667 5.667 18 C 0.703 3.297 19 O -0.611 6.611 20 N -0.725 5.725 21 C 0.169 3.831 22 H 0.074 0.926 23 C -0.122 4.122 24 C -0.111 4.111 25 C 0.051 3.949 26 N -0.695 5.695 27 C 0.052 3.948 28 H 0.274 0.726 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.414 0.586 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.352 0.648 41 H 0.049 0.951 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -12.608 2.566 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.490 4.490 8 H 0.115 0.885 9 O -0.108 6.108 10 C 0.077 3.923 11 C -0.284 4.284 12 C 0.101 3.899 13 F -0.123 7.123 14 C -0.221 4.221 15 C -0.071 4.071 16 C -0.013 4.013 17 N -0.314 5.314 18 C 0.404 3.596 19 O -0.490 6.490 20 N -0.381 5.381 21 C 0.063 3.937 22 H 0.092 0.908 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.077 4.077 26 N -0.328 5.328 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.176 0.824 31 H 0.165 0.835 32 H 0.250 0.750 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.171 0.829 41 H 0.068 0.932 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.605 -13.634 2.708 16.348 hybrid contribution -0.131 2.513 0.048 2.517 sum -8.736 -11.121 2.756 14.408 Atomic orbital electron populations 1.70118 1.07494 1.28869 1.47694 1.26360 0.96841 1.02050 0.95556 0.84623 0.78240 0.75415 0.78613 1.18094 1.19155 1.19461 1.21760 0.92467 0.81179 1.53609 0.88498 1.83908 1.34621 1.11831 1.80450 1.19148 0.90145 0.87138 0.95904 1.20931 0.94029 0.98998 1.14401 1.17433 0.76975 0.94144 1.01345 1.91427 1.31367 1.97331 1.92196 1.20846 0.95012 0.96323 1.09903 1.20689 0.92981 0.96930 0.96548 1.16865 0.83838 0.90702 1.09865 1.42248 1.05940 1.29665 1.53541 1.16020 0.83450 0.81264 0.78897 1.90882 1.58261 1.47161 1.52745 1.45058 1.03895 1.34695 1.54440 1.20816 0.95907 0.88350 0.88597 0.90785 1.21865 0.93014 1.00396 1.00749 1.21561 1.02197 0.97786 0.93421 1.22094 0.87866 1.00356 0.97432 1.60167 1.21810 1.42608 1.08180 1.22176 0.98964 0.92476 0.94305 0.91640 0.84658 0.82422 0.83489 0.75013 0.75404 0.90471 0.90074 0.91492 0.88608 0.89003 0.94595 0.82876 0.93204 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.70 13.67 21.61 0.30 -50.41 16 2 C -0.01 -0.45 5.49 84.83 0.47 0.02 16 3 Si 1.01 40.86 29.55 68.60 2.03 42.88 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.41 -22.62 9.44 67.92 0.64 -21.98 16 8 H 0.10 5.01 5.30 -2.91 -0.02 5.00 16 9 O -0.20 -11.03 9.30 -22.88 -0.21 -11.24 16 10 C 0.13 6.18 6.66 22.68 0.15 6.33 16 11 C -0.26 -11.67 9.11 22.41 0.20 -11.47 16 12 C 0.12 4.73 7.29 22.37 0.16 4.90 16 13 F -0.14 -5.33 17.26 44.97 0.78 -4.55 16 14 C -0.20 -7.09 10.02 22.33 0.22 -6.86 16 15 C -0.05 -1.91 8.65 22.37 0.19 -1.72 16 16 C 0.08 3.49 6.29 38.22 0.24 3.73 16 17 N -0.67 -24.96 5.21 -316.70 -1.65 -26.61 16 18 C 0.70 24.59 8.26 179.05 1.48 26.07 16 19 O -0.61 -24.95 13.76 -4.00 -0.06 -25.01 16 20 N -0.73 -18.80 5.08 -457.56 -2.33 -21.13 16 21 C 0.17 3.93 2.62 45.04 0.12 4.04 16 22 H 0.07 2.10 7.58 -2.39 -0.02 2.09 16 23 C -0.12 -1.91 5.48 30.67 0.17 -1.74 16 24 C -0.11 -1.47 6.09 30.65 0.19 -1.28 16 25 C 0.05 0.72 6.55 86.32 0.57 1.28 16 26 N -0.69 -13.48 6.85 -514.00 -3.52 -17.00 16 27 C 0.05 1.24 6.13 86.33 0.53 1.77 16 28 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.14 6.11 5.71 -2.91 -0.02 6.09 16 30 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 31 H 0.15 5.30 6.48 -2.91 -0.02 5.28 16 32 H 0.41 14.88 8.57 -92.71 -0.79 14.08 16 33 H 0.41 8.61 8.62 -92.71 -0.80 7.81 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.35 5.88 8.90 -89.70 -0.80 5.08 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -67.02 352.74 -0.62 -67.64 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -1.29 Total: 42.32 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.33 Total: 3.10 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -7.20 Total: -115.14 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.27 Total: -36.25 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -67.02 -0.62 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.418 kcal (2) G-P(sol) polarization free energy of solvation -67.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds