Wall clock time and date at job start Tue Mar 31 2020 14:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47062 * 239.72567 * 3 2 1 5 5 H 1.48496 * 109.46935 * 359.72412 * 3 2 1 6 6 H 1.48495 * 109.47218 * 119.72544 * 3 2 1 7 7 C 1.38634 * 119.99474 * 179.72628 * 2 1 3 8 8 H 1.08004 * 120.00001 * 180.27541 * 7 2 1 9 9 O 1.34805 * 120.00545 * 0.27256 * 7 2 1 10 10 C 1.35773 * 117.00135 * 174.98034 * 9 7 2 11 11 C 1.38732 * 120.09052 * 5.20127 * 10 9 7 12 12 C 1.38346 * 119.97837 * 179.72705 * 11 10 9 13 13 F 1.35108 * 119.92580 * 180.29586 * 12 11 10 14 14 C 1.38545 * 120.15189 * 0.57266 * 12 11 10 15 15 C 1.38196 * 120.17256 * 359.69771 * 14 12 11 16 16 C 1.38694 * 120.02361 * 0.02562 * 15 14 12 17 17 N 1.40131 * 120.07967 * 180.02562 * 16 15 14 18 18 C 1.34783 * 119.99721 * 335.23129 * 17 16 15 19 19 O 1.21586 * 120.00038 * 354.32964 * 18 17 16 20 20 N 1.34781 * 119.99634 * 174.32644 * 18 17 16 21 21 C 1.46503 * 119.99416 * 180.02562 * 20 18 17 22 22 H 1.08993 * 109.50576 * 34.92381 * 21 20 18 23 23 C 1.53124 * 109.49672 * 155.00320 * 21 20 18 24 24 C 1.53122 * 109.15443 * 177.59646 * 23 21 20 25 25 C 1.53040 * 109.27899 * 302.33929 * 24 23 21 26 26 N 1.46850 * 109.52117 * 59.18136 * 25 24 23 27 27 C 1.46845 * 111.19972 * 298.26145 * 26 25 24 28 28 H 0.96994 * 120.00245 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.01345 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.91331 * 179.72768 * 14 12 11 31 31 H 1.07997 * 119.99093 * 180.02562 * 15 14 12 32 32 H 0.97000 * 120.00335 * 155.22860 * 17 16 15 33 33 H 0.97002 * 120.00045 * 0.02562 * 20 18 17 34 34 H 1.08998 * 109.52174 * 297.49203 * 23 21 20 35 35 H 1.08996 * 109.52534 * 57.62723 * 23 21 20 36 36 H 1.08995 * 109.50802 * 62.28472 * 24 23 21 37 37 H 1.09004 * 109.49861 * 182.40867 * 24 23 21 38 38 H 1.08999 * 109.46392 * 179.19811 * 25 24 23 39 39 H 1.09001 * 109.46427 * 299.17344 * 25 24 23 40 40 H 1.00900 * 110.99947 * 174.15825 * 26 25 24 41 41 H 1.09002 * 109.46126 * 301.72388 * 27 26 25 42 42 H 1.08998 * 109.46247 * 181.75475 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1086 1.6934 -1.2091 5 1 1.2849 2.7464 -0.0067 6 1 3.0985 1.6992 1.2158 7 6 2.0088 -1.2007 0.0057 8 1 3.0889 -1.2007 0.0102 9 8 1.3348 -2.3681 0.0058 10 6 2.0707 -3.5047 -0.0943 11 6 3.4564 -3.4395 -0.0821 12 6 4.2039 -4.5997 -0.1785 13 9 5.5534 -4.5355 -0.1605 14 6 3.5720 -5.8267 -0.2994 15 6 2.1920 -5.8984 -0.3178 16 6 1.4355 -4.7404 -0.2159 17 7 0.0361 -4.8119 -0.2340 18 6 -0.5778 -5.8547 -0.8275 19 8 0.0766 -6.6792 -1.4361 20 7 -1.9169 -5.9834 -0.7464 21 6 -2.5841 -7.1172 -1.3912 22 1 -1.9447 -7.9978 -1.3312 23 6 -3.9114 -7.3998 -0.6819 24 6 -4.6299 -8.5465 -1.3987 25 6 -4.8435 -8.1698 -2.8665 26 7 -3.5447 -7.9099 -3.5005 27 6 -2.8570 -6.7820 -2.8592 28 1 -0.4850 -0.8400 0.0004 29 1 3.9515 -2.4838 0.0076 30 1 4.1593 -6.7294 -0.3788 31 1 1.7025 -6.8564 -0.4117 32 1 -0.4907 -4.1109 0.1807 33 1 -2.4389 -5.3254 -0.2612 34 1 -3.7185 -7.6814 0.3532 35 1 -4.5350 -6.5062 -0.7063 36 1 -4.0229 -9.4499 -1.3394 37 1 -5.5951 -8.7240 -0.9244 38 1 -5.3421 -8.9900 -3.3831 39 1 -5.4620 -7.2742 -2.9254 40 1 -3.6511 -7.7524 -4.4915 41 1 -3.4849 -5.8929 -2.9181 42 1 -1.9129 -6.5941 -3.3704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841146195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:11 Heat of formation + Delta-G solvation = -77.125863 kcal Electronic energy + Delta-G solvation = -27130.755099 eV Core-core repulsion = 23025.722772 eV Total energy + Delta-G solvation = -4105.032327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.26560 -40.51279 -39.25688 -38.30374 -36.48716 -34.43211 -34.14885 -32.40884 -32.03312 -29.94234 -29.33277 -27.84200 -25.13587 -24.05127 -23.42727 -22.31112 -21.64786 -20.55183 -20.13571 -18.74574 -18.26253 -17.68952 -17.17071 -16.52142 -15.78582 -15.34919 -15.09973 -14.98694 -14.93413 -14.73756 -14.25462 -14.08785 -14.03575 -13.89634 -13.87810 -13.70457 -13.40239 -13.15797 -12.79645 -12.40370 -12.32038 -11.80148 -11.45418 -11.24383 -11.00687 -10.91920 -10.83778 -10.76193 -10.70525 -10.36568 -9.93544 -9.84804 -9.51959 -9.12021 -8.89962 -8.68344 -7.91757 -7.11285 -6.91804 -4.20831 1.80640 2.07348 2.73896 3.18403 3.22199 3.34697 3.38768 3.96018 3.99951 4.33326 4.35606 4.51906 4.61967 4.68933 4.75820 4.99330 5.00222 5.06825 5.12174 5.26302 5.36761 5.39230 5.52266 5.57671 5.66928 5.70682 5.76543 5.93724 5.98401 6.02820 6.13986 6.41533 6.53095 6.62394 6.79801 6.85463 6.91743 7.03141 7.09331 7.16781 7.39368 7.59540 8.15206 8.22735 8.71356 8.76992 9.37264 10.51450 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.003408 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.466608 B = 8214.471393 C =10070.070951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.014 3.986 3 Si 1.094 2.906 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.470 4.470 8 H 0.086 0.914 9 O -0.197 6.197 10 C 0.156 3.844 11 C -0.252 4.252 12 C 0.123 3.877 13 F -0.151 7.151 14 C -0.222 4.222 15 C -0.062 4.062 16 C 0.083 3.917 17 N -0.665 5.665 18 C 0.703 3.297 19 O -0.578 6.578 20 N -0.743 5.743 21 C 0.169 3.831 22 H 0.098 0.902 23 C -0.130 4.130 24 C -0.113 4.113 25 C 0.054 3.946 26 N -0.686 5.686 27 C 0.046 3.954 28 H 0.279 0.721 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.410 0.590 33 H 0.397 0.603 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.346 0.654 41 H 0.031 0.969 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -12.264 -1.515 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.918 3.082 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.545 4.545 8 H 0.104 0.896 9 O -0.101 6.101 10 C 0.101 3.899 11 C -0.273 4.273 12 C 0.104 3.896 13 F -0.130 7.130 14 C -0.242 4.242 15 C -0.083 4.083 16 C -0.012 4.012 17 N -0.311 5.311 18 C 0.404 3.596 19 O -0.456 6.456 20 N -0.398 5.398 21 C 0.063 3.937 22 H 0.116 0.884 23 C -0.168 4.168 24 C -0.152 4.152 25 C -0.076 4.076 26 N -0.318 5.318 27 C -0.085 4.085 28 H 0.089 0.911 29 H 0.161 0.839 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.245 0.755 33 H 0.230 0.770 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.164 0.836 41 H 0.049 0.951 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.348 -11.753 -1.668 14.512 hybrid contribution -0.418 -0.098 0.018 0.430 sum -8.766 -11.850 -1.650 14.832 Atomic orbital electron populations 1.70625 1.06515 1.31359 1.42363 1.26552 0.96777 1.01072 0.94731 0.83115 0.74559 0.73207 0.77319 1.20602 1.19728 1.20577 1.22223 0.93299 0.81774 1.57246 0.89629 1.83581 1.35068 1.12015 1.79432 1.18517 0.89471 0.86195 0.95700 1.20839 0.93299 0.98495 1.14645 1.17459 0.76006 0.94323 1.01859 1.91414 1.30076 1.97376 1.94122 1.20524 0.94641 0.95881 1.13143 1.20816 0.92206 0.97579 0.97705 1.16706 0.81210 0.91342 1.11987 1.42248 1.05322 1.24806 1.58746 1.15882 0.81815 0.82326 0.79548 1.90867 1.63854 1.43951 1.46887 1.45145 1.05587 1.29831 1.59228 1.20719 0.93256 0.89149 0.90557 0.88413 1.21882 0.95643 0.99306 0.99954 1.21527 1.00547 0.98620 0.94468 1.21977 0.90149 0.99911 0.95541 1.60157 1.21324 1.42961 1.07380 1.22352 0.99215 0.91172 0.95737 0.91075 0.83872 0.85839 0.83223 0.75518 0.76950 0.90888 0.91641 0.90684 0.91051 0.90631 0.95200 0.83599 0.95061 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.43 13.70 55.48 0.76 -23.67 16 2 C 0.01 0.38 5.49 -17.51 -0.10 0.28 16 3 Si 1.09 22.77 29.92 -169.99 -5.09 17.68 16 4 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.51 9.49 30.88 0.29 -12.21 16 8 H 0.09 2.18 5.20 -52.48 -0.27 1.91 16 9 O -0.20 -5.06 8.57 0.05 0.00 -5.06 16 10 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 11 C -0.25 -5.60 9.14 -39.36 -0.36 -5.96 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 14 C -0.22 -4.18 10.02 -39.48 -0.40 -4.58 16 15 C -0.06 -1.22 8.72 -39.43 -0.34 -1.56 16 16 C 0.08 1.71 6.45 -83.44 -0.54 1.17 16 17 N -0.67 -11.97 5.30 -14.07 -0.07 -12.04 16 18 C 0.70 11.84 8.34 -86.91 -0.72 11.12 16 19 O -0.58 -11.32 13.17 5.29 0.07 -11.25 16 20 N -0.74 -9.35 5.08 -58.59 -0.30 -9.65 16 21 C 0.17 1.94 2.62 -67.85 -0.18 1.76 16 22 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 23 C -0.13 -1.10 5.47 -26.60 -0.15 -1.25 16 24 C -0.11 -0.86 6.09 -26.65 -0.16 -1.02 16 25 C 0.05 0.42 6.55 -3.83 -0.03 0.39 16 26 N -0.69 -6.69 6.85 -113.82 -0.78 -7.47 16 27 C 0.05 0.53 6.13 -3.84 -0.02 0.51 16 28 H 0.28 7.79 7.97 -40.82 -0.33 7.47 16 29 H 0.14 3.21 5.63 -52.48 -0.30 2.91 16 30 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.15 2.86 5.78 -52.49 -0.30 2.56 16 32 H 0.41 6.92 8.36 -40.82 -0.34 6.57 16 33 H 0.40 4.11 8.63 -40.82 -0.35 3.76 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.35 2.88 8.90 -39.29 -0.35 2.53 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -30.52 350.88 -8.56 -39.08 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -5.23 Total: 15.74 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.25 Total: -5.77 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.39 Total: -52.83 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.07 Total: -16.30 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.09 Total: 17.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.52 -8.56 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.045 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds