Wall clock time and date at job start Tue Mar 31 2020 14:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47062 * 239.72567 * 3 2 1 5 5 H 1.48496 * 109.46935 * 359.72412 * 3 2 1 6 6 H 1.48495 * 109.47218 * 119.72544 * 3 2 1 7 7 C 1.38634 * 119.99474 * 179.72628 * 2 1 3 8 8 H 1.08004 * 120.00001 * 180.27541 * 7 2 1 9 9 O 1.34805 * 120.00545 * 0.27256 * 7 2 1 10 10 C 1.35773 * 117.00135 * 174.98034 * 9 7 2 11 11 C 1.38732 * 120.09052 * 5.20127 * 10 9 7 12 12 C 1.38346 * 119.97837 * 179.72705 * 11 10 9 13 13 F 1.35108 * 119.92580 * 180.29586 * 12 11 10 14 14 C 1.38545 * 120.15189 * 0.57266 * 12 11 10 15 15 C 1.38196 * 120.17256 * 359.69771 * 14 12 11 16 16 C 1.38694 * 120.02361 * 0.02562 * 15 14 12 17 17 N 1.40131 * 120.07967 * 180.02562 * 16 15 14 18 18 C 1.34783 * 119.99721 * 335.23129 * 17 16 15 19 19 O 1.21586 * 120.00038 * 354.32964 * 18 17 16 20 20 N 1.34781 * 119.99634 * 174.32644 * 18 17 16 21 21 C 1.46503 * 119.99416 * 180.02562 * 20 18 17 22 22 H 1.08993 * 109.50576 * 34.92381 * 21 20 18 23 23 C 1.53124 * 109.49672 * 155.00320 * 21 20 18 24 24 C 1.53122 * 109.15443 * 177.59646 * 23 21 20 25 25 C 1.53040 * 109.27899 * 302.33929 * 24 23 21 26 26 N 1.46850 * 109.52117 * 59.18136 * 25 24 23 27 27 C 1.46845 * 111.19972 * 298.26145 * 26 25 24 28 28 H 0.96994 * 120.00245 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.01345 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.91331 * 179.72768 * 14 12 11 31 31 H 1.07997 * 119.99093 * 180.02562 * 15 14 12 32 32 H 0.97000 * 120.00335 * 155.22860 * 17 16 15 33 33 H 0.97002 * 120.00045 * 0.02562 * 20 18 17 34 34 H 1.08998 * 109.52174 * 297.49203 * 23 21 20 35 35 H 1.08996 * 109.52534 * 57.62723 * 23 21 20 36 36 H 1.08995 * 109.50802 * 62.28472 * 24 23 21 37 37 H 1.09004 * 109.49861 * 182.40867 * 24 23 21 38 38 H 1.08999 * 109.46392 * 179.19811 * 25 24 23 39 39 H 1.09001 * 109.46427 * 299.17344 * 25 24 23 40 40 H 1.00900 * 110.99947 * 174.15825 * 26 25 24 41 41 H 1.09002 * 109.46126 * 301.72388 * 27 26 25 42 42 H 1.08998 * 109.46247 * 181.75475 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1086 1.6934 -1.2091 5 1 1.2849 2.7464 -0.0067 6 1 3.0985 1.6992 1.2158 7 6 2.0088 -1.2007 0.0057 8 1 3.0889 -1.2007 0.0102 9 8 1.3348 -2.3681 0.0058 10 6 2.0707 -3.5047 -0.0943 11 6 3.4564 -3.4395 -0.0821 12 6 4.2039 -4.5997 -0.1785 13 9 5.5534 -4.5355 -0.1605 14 6 3.5720 -5.8267 -0.2994 15 6 2.1920 -5.8984 -0.3178 16 6 1.4355 -4.7404 -0.2159 17 7 0.0361 -4.8119 -0.2340 18 6 -0.5778 -5.8547 -0.8275 19 8 0.0766 -6.6792 -1.4361 20 7 -1.9169 -5.9834 -0.7464 21 6 -2.5841 -7.1172 -1.3912 22 1 -1.9447 -7.9978 -1.3312 23 6 -3.9114 -7.3998 -0.6819 24 6 -4.6299 -8.5465 -1.3987 25 6 -4.8435 -8.1698 -2.8665 26 7 -3.5447 -7.9099 -3.5005 27 6 -2.8570 -6.7820 -2.8592 28 1 -0.4850 -0.8400 0.0004 29 1 3.9515 -2.4838 0.0076 30 1 4.1593 -6.7294 -0.3788 31 1 1.7025 -6.8564 -0.4117 32 1 -0.4907 -4.1109 0.1807 33 1 -2.4389 -5.3254 -0.2612 34 1 -3.7185 -7.6814 0.3532 35 1 -4.5350 -6.5062 -0.7063 36 1 -4.0229 -9.4499 -1.3394 37 1 -5.5951 -8.7240 -0.9244 38 1 -5.3421 -8.9900 -3.3831 39 1 -5.4620 -7.2742 -2.9254 40 1 -3.6511 -7.7524 -4.4915 41 1 -3.4849 -5.8929 -2.9181 42 1 -1.9129 -6.5941 -3.3704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841146195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:11 Heat of formation + Delta-G solvation = -99.001724 kcal Electronic energy + Delta-G solvation = -27131.703708 eV Core-core repulsion = 23025.722772 eV Total energy + Delta-G solvation = -4105.980936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.86733 -41.94323 -40.72349 -39.43125 -38.14417 -35.66769 -35.53809 -34.34218 -32.79022 -31.26544 -30.81366 -29.28452 -27.05445 -24.82939 -24.61834 -23.84867 -23.08973 -21.88331 -21.03842 -20.55583 -19.73106 -19.13423 -18.53680 -17.66544 -17.42837 -16.81196 -16.63185 -16.50484 -16.22582 -15.77758 -15.70080 -15.54529 -15.49293 -15.38872 -15.10232 -14.79607 -14.75858 -14.12695 -14.02033 -13.87154 -13.53590 -13.13432 -12.67282 -12.64757 -12.55155 -12.39332 -11.94612 -11.90794 -11.72202 -11.66382 -11.54952 -11.43507 -11.08059 -10.78373 -10.26217 -9.62883 -9.46057 -8.95842 -8.76688 -6.25656 0.14446 0.38570 1.46300 1.50996 1.60768 1.78924 1.93773 2.29280 2.66315 2.93053 3.00118 3.10687 3.36774 3.38233 3.69260 3.84201 3.86585 4.01980 4.09803 4.23596 4.24866 4.28590 4.49752 4.57705 4.65242 4.68025 4.81399 4.86943 4.93624 4.99822 5.04628 5.14007 5.18017 5.23516 5.32551 5.37236 5.44015 5.50650 5.84067 5.95271 6.02439 6.21889 6.39437 6.79144 6.85406 7.36470 7.48585 8.49167 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.003408 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.466608 B = 8214.471393 C =10070.070951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.031 4.031 3 Si 1.139 2.861 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.489 4.489 8 H 0.089 0.911 9 O -0.225 6.225 10 C 0.129 3.871 11 C -0.258 4.258 12 C 0.117 3.883 13 F -0.144 7.144 14 C -0.195 4.195 15 C -0.064 4.064 16 C 0.087 3.913 17 N -0.666 5.666 18 C 0.703 3.297 19 O -0.605 6.605 20 N -0.724 5.724 21 C 0.168 3.832 22 H 0.075 0.925 23 C -0.123 4.123 24 C -0.111 4.111 25 C 0.051 3.949 26 N -0.695 5.695 27 C 0.052 3.948 28 H 0.265 0.735 29 H 0.135 0.865 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.413 0.587 33 H 0.410 0.590 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.036 0.964 40 H 0.353 0.647 41 H 0.035 0.965 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 -13.598 -1.417 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.230 4.230 3 Si 0.955 3.045 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.106 0.894 9 O -0.131 6.131 10 C 0.076 3.924 11 C -0.279 4.279 12 C 0.097 3.903 13 F -0.123 7.123 14 C -0.215 4.215 15 C -0.085 4.085 16 C -0.009 4.009 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.485 6.485 20 N -0.380 5.380 21 C 0.063 3.937 22 H 0.093 0.907 23 C -0.161 4.161 24 C -0.150 4.150 25 C -0.077 4.077 26 N -0.328 5.328 27 C -0.079 4.079 28 H 0.074 0.926 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.249 0.751 33 H 0.246 0.754 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.172 0.828 41 H 0.054 0.946 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.768 -13.139 -1.567 15.873 hybrid contribution -0.257 0.008 -0.059 0.264 sum -9.025 -13.130 -1.626 16.016 Atomic orbital electron populations 1.70730 1.07429 1.30396 1.45539 1.28121 0.96913 1.04232 0.93693 0.82625 0.73876 0.69383 0.78586 1.19061 1.19709 1.18633 1.22532 0.93708 0.82606 1.57563 0.89374 1.83569 1.35520 1.12335 1.81725 1.18866 0.90079 0.86381 0.97029 1.20928 0.93314 0.99099 1.14564 1.17443 0.76317 0.94184 1.02392 1.91432 1.29394 1.97345 1.94088 1.20925 0.94552 0.96544 1.09495 1.21017 0.92571 0.97426 0.97483 1.16941 0.82651 0.90917 1.10367 1.42266 1.04544 1.25383 1.59045 1.16002 0.82966 0.81565 0.79101 1.90836 1.64869 1.44775 1.48033 1.45083 1.04126 1.30292 1.58458 1.20841 0.94252 0.87563 0.91069 0.90660 1.21869 0.93849 1.00347 1.00017 1.21562 1.01419 0.97646 0.94347 1.22093 0.89125 1.00777 0.95752 1.60158 1.22660 1.41945 1.07998 1.22173 0.98113 0.92156 0.95460 0.92599 0.84701 0.82318 0.82298 0.75072 0.75386 0.90166 0.90445 0.91464 0.88651 0.89008 0.94580 0.82819 0.94643 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.11 13.70 21.61 0.30 -51.81 16 2 C -0.03 -1.68 5.49 84.83 0.47 -1.22 16 3 Si 1.14 45.97 29.92 68.60 2.05 48.02 16 4 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.49 -26.76 9.49 67.91 0.64 -26.11 16 8 H 0.09 4.61 5.20 -2.91 -0.02 4.60 16 9 O -0.22 -12.00 8.57 -22.74 -0.19 -12.19 16 10 C 0.13 6.09 6.66 22.69 0.15 6.24 16 11 C -0.26 -11.53 9.14 22.41 0.20 -11.32 16 12 C 0.12 4.58 7.29 22.37 0.16 4.74 16 13 F -0.14 -5.32 17.26 44.97 0.78 -4.54 16 14 C -0.20 -6.89 10.02 22.33 0.22 -6.67 16 15 C -0.06 -2.42 8.72 22.37 0.19 -2.22 16 16 C 0.09 3.62 6.45 38.22 0.25 3.86 16 17 N -0.67 -24.16 5.30 -316.69 -1.68 -25.83 16 18 C 0.70 23.58 8.34 179.05 1.49 25.07 16 19 O -0.61 -23.62 13.17 -3.99 -0.05 -23.67 16 20 N -0.72 -17.83 5.08 -457.55 -2.33 -20.15 16 21 C 0.17 3.72 2.62 45.04 0.12 3.84 16 22 H 0.08 2.05 7.58 -2.39 -0.02 2.03 16 23 C -0.12 -1.83 5.47 30.68 0.17 -1.66 16 24 C -0.11 -1.40 6.09 30.65 0.19 -1.22 16 25 C 0.05 0.68 6.55 86.33 0.57 1.25 16 26 N -0.69 -12.80 6.85 -514.00 -3.52 -16.32 16 27 C 0.05 1.18 6.13 86.33 0.53 1.71 16 28 H 0.27 15.49 7.97 -92.71 -0.74 14.75 16 29 H 0.14 6.17 5.63 -2.91 -0.02 6.15 16 30 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.16 5.81 5.78 -2.91 -0.02 5.80 16 32 H 0.41 14.30 8.36 -92.71 -0.78 13.53 16 33 H 0.41 8.09 8.63 -92.71 -0.80 7.29 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.35 5.55 8.90 -89.69 -0.80 4.75 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -67.34 350.88 -0.53 -67.87 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -1.24 Total: 42.34 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.35 Total: -3.70 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -7.23 Total: -114.12 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.25 Total: -35.86 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.05 Total: 48.02 kcal Total: -67.34 -0.53 -67.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.136 kcal (2) G-P(sol) polarization free energy of solvation -67.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds