Wall clock time and date at job start Tue Mar 31 2020 14:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48506 * 109.47036 * 269.99393 * 3 2 1 5 5 H 1.48501 * 109.47280 * 29.99797 * 3 2 1 6 6 H 1.48503 * 109.47169 * 150.00119 * 3 2 1 7 7 C 1.38635 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99721 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.35777 * 116.99839 * 174.95430 * 9 7 2 11 11 C 1.38734 * 120.08833 * 5.43667 * 10 9 7 12 12 C 1.38350 * 119.97931 * 180.02562 * 11 10 9 13 13 F 1.35101 * 119.92455 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.14875 * 0.02562 * 12 11 10 15 15 C 1.38200 * 120.17243 * 359.72481 * 14 12 11 16 16 C 1.38688 * 120.02195 * 0.55031 * 15 14 12 17 17 N 1.40138 * 120.07459 * 179.72486 * 16 15 14 18 18 C 1.34780 * 120.00081 * 34.59721 * 17 16 15 19 19 O 1.21589 * 119.99681 * 355.63119 * 18 17 16 20 20 N 1.34773 * 119.99901 * 175.35645 * 18 17 16 21 21 C 1.46501 * 120.00110 * 180.27787 * 20 18 17 22 22 C 1.52994 * 109.47332 * 179.97438 * 21 20 18 23 23 H 1.09006 * 109.46546 * 294.99370 * 22 21 20 24 24 N 1.46896 * 109.47377 * 54.99538 * 22 21 20 25 25 C 1.53000 * 109.47097 * 175.00060 * 22 21 20 26 26 C 1.52998 * 117.49552 * 248.74449 * 25 22 21 27 27 C 1.53007 * 117.49755 * 180.08594 * 25 22 21 28 28 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.01406 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.91009 * 180.02562 * 14 12 11 31 31 H 1.08002 * 119.98847 * 180.30009 * 15 14 12 32 32 H 0.96998 * 119.99918 * 214.59760 * 17 16 15 33 33 H 0.97005 * 120.00227 * 0.27205 * 20 18 17 34 34 H 1.09007 * 109.46635 * 299.99956 * 21 20 18 35 35 H 1.09001 * 109.47012 * 59.99085 * 21 20 18 36 36 H 1.00900 * 111.00153 * 60.00496 * 24 22 21 37 37 H 1.00900 * 111.00049 * 183.95871 * 24 22 21 38 38 H 1.09000 * 115.55525 * 34.41122 * 25 22 21 39 39 H 1.09003 * 117.50059 * 359.97438 * 26 25 22 40 40 H 1.09003 * 117.50189 * 145.01895 * 26 25 22 41 41 H 1.08993 * 117.49441 * 214.97357 * 27 25 22 42 42 H 1.09000 * 117.50004 * 359.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1043 11 6 3.4561 -3.4397 -0.0938 12 6 4.2032 -4.5990 -0.2025 13 9 5.5527 -4.5346 -0.1926 14 6 3.5707 -5.8258 -0.3223 15 6 2.1906 -5.8981 -0.3283 16 6 1.4346 -4.7399 -0.2256 17 7 0.0351 -4.8114 -0.2373 18 6 -0.5908 -5.8615 0.3302 19 8 0.0587 -6.7849 0.7816 20 7 -1.9364 -5.8854 0.4021 21 6 -2.6166 -7.0240 1.0244 22 6 -4.1297 -6.8023 0.9768 23 1 -4.3900 -5.9402 1.5910 24 7 -4.5455 -6.5587 -0.4108 25 6 -4.8442 -8.0446 1.5128 26 6 -5.6431 -8.8855 0.5151 27 6 -6.3737 -8.0208 1.5455 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4846 -0.0009 30 1 4.1577 -6.7284 -0.4064 31 1 1.7006 -6.8565 -0.4170 32 1 -0.4831 -4.1051 -0.6539 33 1 -2.4546 -5.1487 0.0420 34 1 -2.3655 -7.9367 0.4841 35 1 -2.2956 -7.1161 2.0620 36 1 -4.3150 -7.3442 -1.0006 37 1 -5.5305 -6.3456 -0.4610 38 1 -4.3317 -8.5711 2.3179 39 1 -5.6600 -8.5535 -0.5230 40 1 -5.6565 -9.9652 0.6640 41 1 -6.8673 -8.5320 2.3719 42 1 -6.8709 -7.1200 1.1856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841146532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:58 Heat of formation + Delta-G solvation = -43.201408 kcal Electronic energy + Delta-G solvation = -26622.759889 eV Core-core repulsion = 22519.198637 eV Total energy + Delta-G solvation = -4103.561252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.19423 -40.17935 -39.14779 -38.48741 -36.37915 -34.89001 -33.92311 -32.46044 -32.36029 -29.40809 -28.86774 -27.54647 -25.45635 -23.78610 -22.82279 -22.23611 -21.49128 -20.54022 -19.94975 -18.30003 -18.09087 -17.60869 -16.79489 -16.36308 -16.19636 -15.73750 -15.32948 -15.18712 -14.93469 -14.75049 -14.55006 -14.25211 -13.92275 -13.64918 -13.55055 -13.40523 -13.15540 -12.47799 -12.30846 -12.16640 -12.08556 -11.97658 -11.89429 -11.61328 -11.31008 -10.91396 -10.77799 -10.67506 -10.51985 -10.35091 -9.79746 -9.70063 -9.37233 -9.10226 -8.92257 -8.81326 -7.80737 -7.02708 -6.56271 -4.14000 1.92444 2.18789 2.99543 3.08912 3.10395 3.14658 3.35151 3.57641 3.88433 4.18298 4.29690 4.42153 4.44313 4.54530 4.67154 4.88337 4.92135 4.99914 5.00391 5.18049 5.19862 5.22560 5.47029 5.63715 5.65300 5.70280 5.74169 5.80010 5.84973 6.10492 6.28916 6.59839 6.68365 6.77263 6.84641 6.97423 7.00583 7.10104 7.14434 7.24342 7.43705 7.73558 7.88180 8.41098 8.89413 8.98092 9.52291 10.60778 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003166 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.408252 B = 8842.169729 C =11031.563860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.156 3.844 11 C -0.258 4.258 12 C 0.126 3.874 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.051 4.051 16 C 0.080 3.920 17 N -0.665 5.665 18 C 0.703 3.297 19 O -0.592 6.592 20 N -0.735 5.735 21 C 0.153 3.847 22 C 0.108 3.892 23 H 0.093 0.907 24 N -0.839 5.839 25 C -0.184 4.184 26 C -0.185 4.185 27 C -0.178 4.178 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.411 0.589 33 H 0.405 0.595 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.344 0.656 37 H 0.342 0.658 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 -12.262 -0.236 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.100 3.900 11 C -0.279 4.279 12 C 0.106 3.894 13 F -0.131 7.131 14 C -0.248 4.248 15 C -0.072 4.072 16 C -0.015 4.015 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.471 6.471 20 N -0.391 5.391 21 C 0.028 3.972 22 C -0.004 4.004 23 H 0.111 0.889 24 N -0.370 5.370 25 C -0.205 4.205 26 C -0.222 4.222 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.883 -12.243 0.233 15.735 hybrid contribution -0.415 0.686 -0.089 0.806 sum -10.297 -11.557 0.145 15.480 Atomic orbital electron populations 1.70016 1.05896 1.27887 1.45603 1.25268 0.95894 0.98794 0.96251 0.85693 0.79024 0.79854 0.78821 1.19771 1.20218 1.19096 1.21347 0.91973 0.80494 1.52997 0.88878 1.83938 1.33843 1.11209 1.78116 1.18833 0.89473 0.87312 0.94370 1.20834 0.93418 0.98394 1.15286 1.17456 0.75896 0.94357 1.01668 1.91405 1.30194 1.97384 1.94141 1.20484 0.94642 0.95766 1.13957 1.20677 0.92092 0.97486 0.96921 1.16662 0.81388 0.91497 1.11915 1.42177 1.05107 1.24526 1.59341 1.15900 0.81874 0.82998 0.78863 1.90858 1.64846 1.37240 1.54158 1.44849 1.04525 1.24687 1.65042 1.21053 0.89088 0.88826 0.98248 1.21252 0.93719 0.95519 0.89931 0.88862 1.58860 1.23588 1.46439 1.08084 1.23186 0.93985 1.00450 1.02853 1.23088 1.04683 0.98395 0.96072 1.22972 0.94211 1.02262 1.02018 0.91903 0.84025 0.86028 0.83969 0.75301 0.75917 0.91880 0.91285 0.84103 0.84414 0.87138 0.88639 0.88610 0.88655 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.61 13.67 55.48 0.76 -22.85 16 2 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.45 9.49 30.88 0.29 -10.16 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 9 O -0.17 -4.45 9.32 0.04 0.00 -4.45 16 10 C 0.16 3.68 6.66 -38.94 -0.26 3.42 16 11 C -0.26 -5.76 9.14 -39.36 -0.36 -6.12 16 12 C 0.13 2.58 7.29 -39.43 -0.29 2.30 16 13 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 14 C -0.23 -4.37 10.02 -39.48 -0.40 -4.76 16 15 C -0.05 -1.02 8.70 -39.43 -0.34 -1.36 16 16 C 0.08 1.72 6.33 -83.44 -0.53 1.19 16 17 N -0.66 -12.71 5.20 -14.07 -0.07 -12.78 16 18 C 0.70 12.66 8.41 -86.92 -0.73 11.93 16 19 O -0.59 -12.18 13.76 5.29 0.07 -12.11 16 20 N -0.73 -10.11 5.39 -65.22 -0.35 -10.46 16 21 C 0.15 1.73 5.32 -4.04 -0.02 1.71 16 22 C 0.11 0.89 3.28 -67.72 -0.22 0.67 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 24 N -0.84 -6.29 7.97 -4.67 -0.04 -6.33 16 25 C -0.18 -1.30 5.71 -90.62 -0.52 -1.81 16 26 C -0.19 -1.13 9.62 -26.69 -0.26 -1.39 16 27 C -0.18 -1.08 9.94 -26.69 -0.27 -1.35 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.14 3.15 5.64 -52.49 -0.30 2.85 16 30 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.14 2.77 6.19 -52.49 -0.32 2.44 16 32 H 0.41 7.56 8.59 -40.82 -0.35 7.21 16 33 H 0.41 5.16 8.16 -40.82 -0.33 4.82 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.34 2.47 7.51 -39.29 -0.29 2.18 16 37 H 0.34 2.11 8.01 -39.29 -0.31 1.80 16 38 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16 39 H 0.10 0.52 6.15 -51.93 -0.32 0.20 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.53 7.73 -51.93 -0.40 0.13 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -30.21 357.21 -8.22 -38.43 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -5.00 Total: 17.95 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.99 Total: -4.71 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.30 Total: -52.41 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.07 Total: -16.56 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.21 -8.22 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.768 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds