Wall clock time and date at job start Tue Mar 31 2020 14:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48506 * 109.47036 * 269.99393 * 3 2 1 5 5 H 1.48501 * 109.47280 * 29.99797 * 3 2 1 6 6 H 1.48503 * 109.47169 * 150.00119 * 3 2 1 7 7 C 1.38635 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99721 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.35777 * 116.99839 * 174.95430 * 9 7 2 11 11 C 1.38734 * 120.08833 * 5.43667 * 10 9 7 12 12 C 1.38350 * 119.97931 * 180.02562 * 11 10 9 13 13 F 1.35101 * 119.92455 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.14875 * 0.02562 * 12 11 10 15 15 C 1.38200 * 120.17243 * 359.72481 * 14 12 11 16 16 C 1.38688 * 120.02195 * 0.55031 * 15 14 12 17 17 N 1.40138 * 120.07459 * 179.72486 * 16 15 14 18 18 C 1.34780 * 120.00081 * 34.59721 * 17 16 15 19 19 O 1.21589 * 119.99681 * 355.63119 * 18 17 16 20 20 N 1.34773 * 119.99901 * 175.35645 * 18 17 16 21 21 C 1.46501 * 120.00110 * 180.27787 * 20 18 17 22 22 C 1.52994 * 109.47332 * 179.97438 * 21 20 18 23 23 H 1.09006 * 109.46546 * 294.99370 * 22 21 20 24 24 N 1.46896 * 109.47377 * 54.99538 * 22 21 20 25 25 C 1.53000 * 109.47097 * 175.00060 * 22 21 20 26 26 C 1.52998 * 117.49552 * 248.74449 * 25 22 21 27 27 C 1.53007 * 117.49755 * 180.08594 * 25 22 21 28 28 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.01406 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.91009 * 180.02562 * 14 12 11 31 31 H 1.08002 * 119.98847 * 180.30009 * 15 14 12 32 32 H 0.96998 * 119.99918 * 214.59760 * 17 16 15 33 33 H 0.97005 * 120.00227 * 0.27205 * 20 18 17 34 34 H 1.09007 * 109.46635 * 299.99956 * 21 20 18 35 35 H 1.09001 * 109.47012 * 59.99085 * 21 20 18 36 36 H 1.00900 * 111.00153 * 60.00496 * 24 22 21 37 37 H 1.00900 * 111.00049 * 183.95871 * 24 22 21 38 38 H 1.09000 * 115.55525 * 34.41122 * 25 22 21 39 39 H 1.09003 * 117.50059 * 359.97438 * 26 25 22 40 40 H 1.09003 * 117.50189 * 145.01895 * 26 25 22 41 41 H 1.08993 * 117.49441 * 214.97357 * 27 25 22 42 42 H 1.09000 * 117.50004 * 359.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1043 11 6 3.4561 -3.4397 -0.0938 12 6 4.2032 -4.5990 -0.2025 13 9 5.5527 -4.5346 -0.1926 14 6 3.5707 -5.8258 -0.3223 15 6 2.1906 -5.8981 -0.3283 16 6 1.4346 -4.7399 -0.2256 17 7 0.0351 -4.8114 -0.2373 18 6 -0.5908 -5.8615 0.3302 19 8 0.0587 -6.7849 0.7816 20 7 -1.9364 -5.8854 0.4021 21 6 -2.6166 -7.0240 1.0244 22 6 -4.1297 -6.8023 0.9768 23 1 -4.3900 -5.9402 1.5910 24 7 -4.5455 -6.5587 -0.4108 25 6 -4.8442 -8.0446 1.5128 26 6 -5.6431 -8.8855 0.5151 27 6 -6.3737 -8.0208 1.5455 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4846 -0.0009 30 1 4.1577 -6.7284 -0.4064 31 1 1.7006 -6.8565 -0.4170 32 1 -0.4831 -4.1051 -0.6539 33 1 -2.4546 -5.1487 0.0420 34 1 -2.3655 -7.9367 0.4841 35 1 -2.2956 -7.1161 2.0620 36 1 -4.3150 -7.3442 -1.0006 37 1 -5.5305 -6.3456 -0.4610 38 1 -4.3317 -8.5711 2.3179 39 1 -5.6600 -8.5535 -0.5230 40 1 -5.6565 -9.9652 0.6640 41 1 -6.8673 -8.5320 2.3719 42 1 -6.8709 -7.1200 1.1856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841146532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:57 Heat of formation + Delta-G solvation = -63.971896 kcal Electronic energy + Delta-G solvation = -26623.660565 eV Core-core repulsion = 22519.198637 eV Total energy + Delta-G solvation = -4104.461928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.80655 -41.69584 -40.45648 -39.52094 -38.06743 -35.95349 -35.49255 -34.28694 -33.30272 -31.07633 -30.20208 -28.75196 -27.35706 -24.79112 -23.87050 -23.34202 -22.98601 -21.84160 -20.79717 -20.12062 -19.60006 -19.12616 -18.31281 -17.21595 -17.13735 -16.92030 -16.82053 -16.55392 -16.49996 -16.08796 -15.91749 -15.74630 -15.37773 -15.23739 -14.99070 -14.71942 -14.59794 -14.02000 -13.74169 -13.41680 -13.22830 -12.97266 -12.91168 -12.68916 -12.55073 -12.40195 -12.32123 -12.14233 -11.63436 -11.37316 -11.23294 -10.98734 -10.91202 -10.80532 -10.06585 -9.70416 -9.51632 -8.70996 -8.48780 -6.15004 0.24175 0.49044 1.38257 1.45223 1.53271 1.66590 2.10186 2.16067 2.71045 2.82138 3.07691 3.17702 3.22694 3.47987 3.64174 3.69987 3.88622 3.97524 4.02009 4.17967 4.21333 4.28860 4.39309 4.49946 4.62435 4.74354 4.78013 4.97070 5.00654 5.02931 5.05010 5.18261 5.20722 5.24741 5.32574 5.36489 5.52096 5.61928 5.94779 5.99117 6.12392 6.18222 6.55646 6.95489 7.02355 7.52345 7.66256 8.71549 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003166 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.408252 B = 8842.169729 C =11031.563860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.009 4.009 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.130 3.870 11 C -0.264 4.264 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.203 4.203 15 C -0.052 4.052 16 C 0.080 3.920 17 N -0.667 5.667 18 C 0.700 3.300 19 O -0.617 6.617 20 N -0.718 5.718 21 C 0.151 3.849 22 C 0.121 3.879 23 H 0.090 0.910 24 N -0.843 5.843 25 C -0.194 4.194 26 C -0.181 4.181 27 C -0.172 4.172 28 H 0.274 0.726 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.412 0.588 33 H 0.412 0.588 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.348 0.652 37 H 0.352 0.648 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 -13.252 -0.497 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.076 3.924 11 C -0.284 4.284 12 C 0.101 3.899 13 F -0.123 7.123 14 C -0.223 4.223 15 C -0.072 4.072 16 C -0.016 4.016 17 N -0.314 5.314 18 C 0.401 3.599 19 O -0.499 6.499 20 N -0.373 5.373 21 C 0.027 3.973 22 C 0.009 3.991 23 H 0.108 0.892 24 N -0.376 5.376 25 C -0.214 4.214 26 C -0.218 4.218 27 C -0.209 4.209 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.248 0.752 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.912 -13.274 -0.034 16.567 hybrid contribution -0.388 0.734 -0.018 0.830 sum -10.300 -12.540 -0.052 16.228 Atomic orbital electron populations 1.70125 1.07500 1.28919 1.47550 1.26372 0.96838 1.02067 0.95559 0.84680 0.77835 0.75134 0.79231 1.18818 1.19531 1.18293 1.21751 0.92523 0.81196 1.53783 0.88395 1.83917 1.34644 1.11776 1.80350 1.19178 0.90165 0.87441 0.95637 1.20913 0.93288 0.99069 1.15176 1.17444 0.76216 0.94223 1.02020 1.91425 1.29483 1.97354 1.94086 1.20875 0.94492 0.96471 1.10463 1.20862 0.92483 0.97243 0.96652 1.16925 0.82639 0.91254 1.10751 1.42207 1.04514 1.24968 1.59671 1.16045 0.83000 0.82285 0.78620 1.90825 1.65736 1.38027 1.55280 1.44840 1.03073 1.25441 1.63974 1.21227 0.90926 0.87755 0.97404 1.21029 0.91518 0.96087 0.90492 0.89232 1.58823 1.24478 1.46685 1.07568 1.23078 0.94664 1.00242 1.03452 1.23159 1.03775 0.98550 0.96326 1.23039 0.93208 1.02515 1.02134 0.91646 0.84623 0.82473 0.83000 0.75153 0.75147 0.92008 0.92097 0.83731 0.83273 0.87501 0.87899 0.88290 0.88175 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.06 13.67 21.61 0.30 -50.77 16 2 C -0.01 -0.46 5.49 84.83 0.47 0.00 16 3 Si 1.01 41.02 29.55 68.60 2.03 43.04 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.42 -22.87 9.49 67.91 0.64 -22.23 16 8 H 0.10 5.06 5.20 -2.91 -0.02 5.04 16 9 O -0.20 -11.08 9.32 -22.76 -0.21 -11.29 16 10 C 0.13 6.22 6.66 22.68 0.15 6.38 16 11 C -0.26 -11.80 9.14 22.42 0.20 -11.60 16 12 C 0.12 4.77 7.29 22.37 0.16 4.93 16 13 F -0.14 -5.37 17.26 44.97 0.78 -4.59 16 14 C -0.20 -7.25 10.02 22.33 0.22 -7.03 16 15 C -0.05 -1.99 8.70 22.37 0.19 -1.79 16 16 C 0.08 3.43 6.33 38.22 0.24 3.67 16 17 N -0.67 -25.75 5.20 -316.70 -1.65 -27.40 16 18 C 0.70 25.08 8.41 179.05 1.51 26.59 16 19 O -0.62 -25.06 13.76 -4.00 -0.05 -25.11 16 20 N -0.72 -19.49 5.39 -478.53 -2.58 -22.07 16 21 C 0.15 3.33 5.32 86.38 0.46 3.79 16 22 C 0.12 1.87 3.28 44.91 0.15 2.02 16 23 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 24 N -0.84 -11.45 7.97 -168.69 -1.34 -12.80 16 25 C -0.19 -2.48 5.71 -10.79 -0.06 -2.54 16 26 C -0.18 -1.88 9.62 30.62 0.29 -1.59 16 27 C -0.17 -1.79 9.94 30.62 0.30 -1.48 16 28 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.14 6.14 5.64 -2.91 -0.02 6.13 16 30 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 5.63 6.19 -2.91 -0.02 5.61 16 32 H 0.41 15.59 8.59 -92.71 -0.80 14.79 16 33 H 0.41 10.31 8.16 -92.70 -0.76 9.55 16 34 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.35 4.44 7.51 -89.69 -0.67 3.76 16 37 H 0.35 3.73 8.01 -89.69 -0.72 3.01 16 38 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 39 H 0.10 0.91 6.15 -2.39 -0.01 0.90 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 0.93 7.73 -2.39 -0.02 0.91 16 Total: -1.00 -65.59 357.21 0.39 -65.20 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -1.82 Total: 46.65 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 4.94 Total: -0.87 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -5.27 Total: -113.03 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.27 Total: -36.40 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -65.59 0.39 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.229 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds