Wall clock time and date at job start Tue Mar 31 2020 14:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47559 * 270.00445 * 3 2 1 5 5 H 1.48496 * 109.47150 * 30.00799 * 3 2 1 6 6 H 1.48504 * 109.46874 * 150.00400 * 3 2 1 7 7 C 1.38632 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00140 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.35773 * 117.00343 * 174.95625 * 9 7 2 11 11 C 1.38747 * 120.08609 * 5.43275 * 10 9 7 12 12 C 1.38343 * 119.97584 * 179.72456 * 11 10 9 13 13 F 1.35097 * 119.92214 * 180.27590 * 12 11 10 14 14 C 1.38541 * 120.15256 * 0.52720 * 12 11 10 15 15 C 1.38202 * 120.17452 * 359.77057 * 14 12 11 16 16 C 1.38693 * 120.01880 * 359.95564 * 15 14 12 17 17 N 1.40140 * 120.07305 * 179.97438 * 16 15 14 18 18 C 1.34775 * 119.99771 * 34.60474 * 17 16 15 19 19 O 1.21598 * 120.00412 * 355.61612 * 18 17 16 20 20 N 1.34781 * 119.99828 * 175.62966 * 18 17 16 21 21 C 1.46507 * 120.00057 * 179.97438 * 20 18 17 22 22 C 1.52991 * 109.47155 * 179.97438 * 21 20 18 23 23 H 1.09002 * 110.33938 * 65.79274 * 22 21 20 24 24 C 1.54912 * 110.37543 * 188.17305 * 22 21 20 25 25 C 1.55136 * 101.65671 * 155.89824 * 24 22 21 26 26 C 1.54320 * 103.01743 * 324.34328 * 25 24 22 27 27 N 1.47447 * 107.23440 * 22.28525 * 26 25 24 28 28 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00931 * 359.97243 * 11 10 9 30 30 H 1.07995 * 119.91643 * 179.74453 * 14 12 11 31 31 H 1.07997 * 119.99275 * 179.97438 * 15 14 12 32 32 H 0.96996 * 119.99818 * 214.59429 * 17 16 15 33 33 H 0.96998 * 120.00388 * 359.97438 * 20 18 17 34 34 H 1.09004 * 109.46590 * 299.99706 * 21 20 18 35 35 H 1.08996 * 109.47055 * 59.99098 * 21 20 18 36 36 H 1.09004 * 110.98267 * 273.98919 * 24 22 21 37 37 H 1.09000 * 110.98643 * 37.79715 * 24 22 21 38 38 H 1.08999 * 110.70195 * 205.96213 * 25 24 22 39 39 H 1.08994 * 110.85660 * 82.79285 * 25 24 22 40 40 H 1.08997 * 109.89171 * 262.88228 * 26 25 24 41 41 H 1.08996 * 110.02374 * 141.76530 * 26 25 24 42 42 H 1.00903 * 111.00102 * 123.25375 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4473 2.6526 0.7002 6 1 3.5474 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0702 -3.5044 -0.1074 11 6 3.4562 -3.4396 -0.0969 12 6 4.2031 -4.5995 -0.2002 13 9 5.5525 -4.5356 -0.1843 14 6 3.5707 -5.8257 -0.3253 15 6 2.1906 -5.8970 -0.3426 16 6 1.4346 -4.7393 -0.2338 17 7 0.0352 -4.8101 -0.2519 18 6 -0.5934 -5.8644 0.3048 19 8 0.0539 -6.7918 0.7516 20 7 -1.9395 -5.8909 0.3662 21 6 -2.6228 -7.0372 0.9708 22 6 -4.1358 -6.8171 0.9140 23 1 -4.4796 -6.8142 -0.1204 24 6 -4.8710 -7.9123 1.7262 25 6 -6.2058 -7.2021 2.0734 26 6 -5.7733 -5.7370 2.2924 27 7 -4.4965 -5.5472 1.5798 28 1 -0.4850 0.8400 0.0004 29 1 3.9515 -2.4845 -0.0041 30 1 4.1576 -6.7283 -0.4098 31 1 1.7006 -6.8544 -0.4407 32 1 -0.4811 -4.1004 -0.6649 33 1 -2.4560 -5.1511 0.0100 34 1 -2.3663 -7.9436 0.4225 35 1 -2.3097 -7.1401 2.0098 36 1 -5.0473 -8.7984 1.1163 37 1 -4.3170 -8.1662 2.6299 38 1 -6.6374 -7.6168 2.9843 39 1 -6.9114 -7.2759 1.2459 40 1 -5.6358 -5.5461 3.3567 41 1 -6.5271 -5.0610 1.8890 42 1 -4.5641 -4.7948 0.9109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841146928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:51 Heat of formation + Delta-G solvation = -91.283197 kcal Electronic energy + Delta-G solvation = -26777.119975 eV Core-core repulsion = 22671.473740 eV Total energy + Delta-G solvation = -4105.646235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.81045 -41.70914 -40.46887 -39.50211 -38.05912 -35.61494 -35.50353 -34.29018 -31.37847 -31.12220 -30.91823 -29.52038 -27.37985 -26.01028 -24.05506 -23.25506 -22.23303 -21.55722 -21.33170 -20.12667 -19.65695 -19.18307 -18.28128 -17.93775 -17.16764 -16.93387 -16.59601 -16.37961 -16.24899 -16.14530 -15.93791 -15.47641 -15.23406 -15.13080 -14.95815 -14.77230 -14.09986 -13.99059 -13.74424 -13.44049 -13.36738 -13.04522 -12.95725 -12.69226 -12.55907 -12.33768 -12.18235 -12.14386 -12.04148 -11.64059 -11.60432 -11.30064 -10.98592 -10.80783 -10.08360 -9.52117 -9.38674 -8.71744 -8.49198 -6.15338 0.23849 0.48745 1.38050 1.44916 1.52971 1.63862 2.10062 2.15844 2.70839 3.07209 3.07447 3.19399 3.31893 3.47730 3.70058 3.80269 3.97100 4.12204 4.18318 4.23177 4.25672 4.38972 4.59510 4.60704 4.69422 4.78067 4.87913 4.96761 4.99839 5.04241 5.05726 5.14155 5.24436 5.31956 5.34908 5.36068 5.50116 5.60461 5.92944 5.95221 5.96986 6.10878 6.42092 6.95152 6.98564 7.50314 7.65586 8.71104 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003467 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.828715 B = 8073.155273 C =10544.695703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.098 0.902 9 O -0.202 6.202 10 C 0.130 3.870 11 C -0.264 4.264 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.203 4.203 15 C -0.052 4.052 16 C 0.080 3.920 17 N -0.666 5.666 18 C 0.701 3.299 19 O -0.616 6.616 20 N -0.721 5.721 21 C 0.157 3.843 22 C 0.069 3.931 23 H 0.075 0.925 24 C -0.120 4.120 25 C -0.136 4.136 26 C 0.045 3.955 27 N -0.700 5.700 28 H 0.274 0.726 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.413 0.587 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -12.008 -0.663 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.076 3.924 11 C -0.285 4.285 12 C 0.101 3.899 13 F -0.123 7.123 14 C -0.223 4.223 15 C -0.072 4.072 16 C -0.016 4.016 17 N -0.313 5.313 18 C 0.402 3.598 19 O -0.497 6.497 20 N -0.376 5.376 21 C 0.032 3.968 22 C -0.041 4.041 23 H 0.093 0.907 24 C -0.158 4.158 25 C -0.174 4.174 26 C -0.084 4.084 27 N -0.331 5.331 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.249 0.751 33 H 0.242 0.758 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.410 -12.748 0.366 16.462 hybrid contribution -0.326 1.805 -0.863 2.027 sum -10.736 -10.943 -0.497 15.338 Atomic orbital electron populations 1.70123 1.07487 1.28905 1.47548 1.26361 0.96838 1.02038 0.95541 0.84684 0.77840 0.75148 0.79239 1.18776 1.19540 1.18327 1.21747 0.92517 0.81198 1.53804 0.88428 1.83913 1.34649 1.11785 1.80349 1.19173 0.90153 0.87443 0.95604 1.20917 0.93309 0.99058 1.15214 1.17443 0.76222 0.94224 1.02005 1.91424 1.29489 1.97355 1.94078 1.20876 0.94504 0.96488 1.10436 1.20873 0.92475 0.97258 0.96637 1.16922 0.82633 0.91312 1.10760 1.42199 1.04540 1.24459 1.60138 1.16032 0.82938 0.82343 0.78511 1.90830 1.65793 1.37900 1.55135 1.44848 1.03220 1.24795 1.64745 1.21309 0.90775 0.87238 0.97443 1.22625 0.92731 0.90678 0.98044 0.90703 1.22700 0.95543 0.97358 1.00210 1.22771 0.97144 0.94510 1.02972 1.22616 0.89402 0.97009 0.99384 1.61630 1.32739 1.06490 1.32209 0.91652 0.84635 0.82451 0.82933 0.75138 0.75845 0.90956 0.93263 0.88704 0.91068 0.89759 0.90220 0.91816 0.91946 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.87 13.67 21.61 0.30 -50.57 16 2 C -0.01 -0.43 5.49 84.83 0.47 0.04 16 3 Si 1.01 40.96 29.55 68.60 2.03 42.99 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.42 -22.86 9.49 67.91 0.64 -22.22 16 8 H 0.10 5.04 5.20 -2.91 -0.02 5.03 16 9 O -0.20 -11.07 9.31 -22.76 -0.21 -11.28 16 10 C 0.13 6.24 6.66 22.69 0.15 6.39 16 11 C -0.26 -11.84 9.14 22.42 0.20 -11.63 16 12 C 0.12 4.78 7.29 22.37 0.16 4.94 16 13 F -0.14 -5.37 17.26 44.97 0.78 -4.60 16 14 C -0.20 -7.25 10.02 22.33 0.22 -7.03 16 15 C -0.05 -1.98 8.70 22.37 0.19 -1.79 16 16 C 0.08 3.40 6.33 38.21 0.24 3.64 16 17 N -0.67 -25.53 5.20 -316.69 -1.65 -27.18 16 18 C 0.70 25.12 8.41 179.05 1.51 26.63 16 19 O -0.62 -25.18 13.76 -4.02 -0.06 -25.24 16 20 N -0.72 -19.44 5.42 -478.52 -2.59 -22.04 16 21 C 0.16 3.57 5.44 86.38 0.47 4.04 16 22 C 0.07 1.13 3.41 45.38 0.15 1.28 16 23 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 24 C -0.12 -1.57 6.49 31.98 0.21 -1.36 16 25 C -0.14 -1.54 6.94 31.77 0.22 -1.32 16 26 C 0.04 0.67 7.58 86.65 0.66 1.33 16 27 N -0.70 -12.97 6.66 -482.44 -3.21 -16.19 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.14 6.15 5.64 -2.91 -0.02 6.13 16 30 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 5.62 6.19 -2.91 -0.02 5.60 16 32 H 0.41 15.26 8.58 -92.71 -0.80 14.46 16 33 H 0.41 9.41 8.05 -92.71 -0.75 8.66 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.08 7.99 -2.39 -0.02 1.07 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.34 5.86 8.68 -89.69 -0.78 5.09 16 Total: -1.00 -67.34 355.32 -0.33 -67.67 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -1.22 Total: 43.48 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.51 Total: 2.95 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -7.16 Total: -115.97 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.27 Total: -36.52 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -67.34 -0.33 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841146928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.611 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds