Wall clock time and date at job start Tue Mar 31 2020 14:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48508 * 109.46860 * 239.99206 * 3 2 1 5 5 H 1.48498 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47152 * 119.99662 * 3 2 1 7 7 C 1.38636 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00191 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00376 * 174.95210 * 9 7 2 11 11 C 1.38736 * 120.08692 * 5.43068 * 10 9 7 12 12 C 1.38344 * 119.97461 * 179.97438 * 11 10 9 13 13 F 1.35102 * 119.92193 * 179.97438 * 12 11 10 14 14 C 1.38543 * 120.15525 * 0.02562 * 12 11 10 15 15 C 1.38201 * 120.17105 * 359.74665 * 14 12 11 16 16 C 1.38692 * 120.02195 * 0.50945 * 15 14 12 17 17 N 1.40139 * 120.07376 * 179.77339 * 16 15 14 18 18 C 1.34772 * 119.99875 * 34.58710 * 17 16 15 19 19 O 1.21587 * 120.00539 * 355.63252 * 18 17 16 20 20 N 1.34787 * 119.99458 * 175.63007 * 18 17 16 21 21 C 1.46500 * 119.99892 * 180.02562 * 20 18 17 22 22 C 1.52991 * 109.47139 * 180.02562 * 21 20 18 23 23 N 1.46899 * 112.84891 * 48.80538 * 22 21 20 24 24 C 1.53780 * 113.61599 * 179.97438 * 22 21 20 25 25 C 1.53782 * 87.08299 * 139.98084 * 24 22 21 26 26 C 1.53778 * 87.17328 * 334.52814 * 25 24 22 27 27 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.01078 * 359.96136 * 11 10 9 29 29 H 1.08000 * 119.91329 * 180.02562 * 14 12 11 30 30 H 1.08000 * 119.98578 * 180.25418 * 15 14 12 31 31 H 0.96998 * 119.99370 * 214.59135 * 17 16 15 32 32 H 0.97002 * 119.99844 * 0.02562 * 20 18 17 33 33 H 1.09001 * 109.46676 * 59.99906 * 21 20 18 34 34 H 1.09003 * 109.46843 * 300.00457 * 21 20 18 35 35 H 1.00905 * 111.00134 * 311.19148 * 23 22 21 36 36 H 1.00902 * 111.00317 * 75.15275 * 23 22 21 37 37 H 1.08999 * 113.61341 * 25.43166 * 24 22 21 38 38 H 1.08998 * 113.69440 * 254.54364 * 24 22 21 39 39 H 1.09002 * 113.60948 * 89.11620 * 25 24 22 40 40 H 1.08995 * 113.61672 * 219.93474 * 25 24 22 41 41 H 1.09002 * 113.61784 * 140.01662 * 26 25 24 42 42 H 1.08997 * 113.61540 * 270.92534 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1034 1.6964 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0703 -3.5045 -0.1054 11 6 3.4561 -3.4397 -0.0939 12 6 4.2032 -4.5992 -0.2015 13 9 5.5526 -4.5348 -0.1907 14 6 3.5708 -5.8260 -0.3212 15 6 2.1907 -5.8982 -0.3285 16 6 1.4346 -4.7399 -0.2265 17 7 0.0351 -4.8115 -0.2386 18 6 -0.5909 -5.8614 0.3289 19 8 0.0585 -6.7847 0.7809 20 7 -1.9368 -5.8879 0.3956 21 6 -2.6173 -7.0289 1.0130 22 6 -4.1306 -6.8105 0.9587 23 7 -4.6025 -6.4157 -0.3752 24 6 -4.9415 -7.9579 1.5838 25 6 -5.8647 -6.8790 2.1741 26 6 -4.6667 -5.9182 2.0944 27 1 -0.4850 0.8400 -0.0004 28 1 3.9515 -2.4845 -0.0014 29 1 4.1578 -6.7287 -0.4044 30 1 1.7008 -6.8566 -0.4179 31 1 -0.4829 -4.1053 -0.6556 32 1 -2.4548 -5.1514 0.0347 33 1 -2.3003 -7.1223 2.0517 34 1 -2.3624 -7.9402 0.4719 35 1 -4.0443 -5.6622 -0.7479 36 1 -4.6109 -7.2048 -1.0040 37 1 -4.3912 -8.5215 2.3372 38 1 -5.4314 -8.5983 0.8504 39 1 -6.6898 -6.6034 1.5172 40 1 -6.1877 -7.0906 3.1933 41 1 -4.9344 -4.9121 1.7717 42 1 -4.0413 -5.9252 2.9872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841147105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:48 Heat of formation + Delta-G solvation = -48.026865 kcal Electronic energy + Delta-G solvation = -26972.071810 eV Core-core repulsion = 22868.301310 eV Total energy + Delta-G solvation = -4103.770500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.25167 -40.45374 -39.60730 -38.61234 -36.42400 -34.44274 -34.05821 -32.42174 -31.75854 -29.45650 -28.71094 -27.06806 -25.91208 -25.50348 -23.01427 -22.21157 -21.56606 -20.56555 -19.10141 -18.40293 -18.29839 -17.75360 -16.85870 -16.01997 -15.77893 -15.47215 -15.31117 -15.22588 -14.97206 -14.83203 -14.62344 -14.30368 -14.08643 -13.68646 -13.52317 -13.41560 -13.22528 -12.89521 -12.52131 -12.35214 -12.14701 -11.71936 -11.65697 -11.37000 -11.10297 -10.95916 -10.81932 -10.75530 -10.58075 -10.46638 -9.91333 -9.78123 -9.47577 -9.05390 -9.00708 -8.96841 -7.88176 -7.11597 -6.61596 -4.19595 1.84662 2.12101 2.81571 3.06725 3.07227 3.09775 3.42528 3.84065 4.06378 4.21044 4.34451 4.42188 4.53976 4.62474 4.67769 4.85592 4.94833 5.11450 5.19135 5.43524 5.50159 5.55142 5.56185 5.62105 5.73309 5.74121 5.87707 6.02760 6.06452 6.14127 6.19151 6.43728 6.58514 6.67204 6.88587 6.90607 6.93433 7.06235 7.08273 7.12188 7.27289 7.65612 7.82498 8.21323 8.80431 8.84868 9.45622 10.55330 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003560 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.297858 B = 7862.843534 C =10136.492211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.258 4.258 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.229 4.229 15 C -0.050 4.050 16 C 0.077 3.923 17 N -0.663 5.663 18 C 0.704 3.296 19 O -0.585 6.585 20 N -0.746 5.746 21 C 0.122 3.878 22 C 0.077 3.923 23 N -0.819 5.819 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.127 4.127 27 H 0.272 0.728 28 H 0.143 0.857 29 H 0.122 0.878 30 H 0.142 0.858 31 H 0.411 0.589 32 H 0.395 0.605 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.343 0.657 36 H 0.345 0.655 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 -10.865 -0.101 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.101 3.899 11 C -0.279 4.279 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.018 4.018 17 N -0.310 5.310 18 C 0.405 3.595 19 O -0.463 6.463 20 N -0.403 5.403 21 C -0.005 4.005 22 C -0.017 4.017 23 N -0.350 5.350 24 C -0.163 4.163 25 C -0.166 4.166 26 C -0.165 4.165 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.140 0.860 30 H 0.160 0.840 31 H 0.246 0.754 32 H 0.230 0.770 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.080 -11.278 0.716 14.496 hybrid contribution 1.322 1.343 -0.640 1.990 sum -7.758 -9.934 0.076 12.605 Atomic orbital electron populations 1.69995 1.05929 1.28098 1.45379 1.25269 0.95900 0.98820 0.96126 0.85756 0.78763 0.79458 0.79407 1.19346 1.20180 1.19370 1.21308 0.91974 0.80451 1.53212 0.88888 1.83930 1.33880 1.11243 1.78011 1.18818 0.89486 0.87269 0.94318 1.20841 0.93404 0.98433 1.15255 1.17458 0.75934 0.94337 1.01416 1.91411 1.30149 1.97380 1.94100 1.20484 0.94611 0.95817 1.13991 1.20663 0.92141 0.97401 0.96853 1.16644 0.81202 0.91565 1.12429 1.42173 1.05263 1.24388 1.59204 1.15875 0.81658 0.83112 0.78863 1.90874 1.64580 1.37145 1.53714 1.45020 1.04970 1.24478 1.65847 1.21836 0.91453 0.88285 0.98940 1.22311 0.90318 0.98273 0.90759 1.58763 1.59418 1.13641 1.03187 1.22962 0.97640 0.95721 1.00015 1.22681 0.97039 0.96222 1.00677 1.23045 0.97507 0.98818 0.97152 0.91785 0.83961 0.85963 0.84034 0.75366 0.77038 0.91035 0.91767 0.84244 0.84167 0.89476 0.90975 0.89627 0.91803 0.90720 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.25 13.67 55.48 0.76 -22.49 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.33 9.49 30.88 0.29 -10.04 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.36 9.32 0.03 0.00 -4.36 16 10 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 11 C -0.26 -5.65 9.14 -39.36 -0.36 -6.01 16 12 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 14 C -0.23 -4.28 10.02 -39.48 -0.40 -4.68 16 15 C -0.05 -0.97 8.69 -39.43 -0.34 -1.31 16 16 C 0.08 1.59 6.33 -83.43 -0.53 1.06 16 17 N -0.66 -12.14 5.20 -14.07 -0.07 -12.21 16 18 C 0.70 12.14 8.41 -86.91 -0.73 11.41 16 19 O -0.58 -11.72 13.76 5.29 0.07 -11.65 16 20 N -0.75 -9.55 5.32 -65.23 -0.35 -9.90 16 21 C 0.12 1.35 5.30 -4.05 -0.02 1.33 16 22 C 0.08 0.68 1.30 -130.65 -0.17 0.51 16 23 N -0.82 -6.71 9.26 1.51 0.01 -6.70 16 24 C -0.13 -0.96 7.43 -25.92 -0.19 -1.16 16 25 C -0.13 -1.04 7.99 -25.92 -0.21 -1.24 16 26 C -0.13 -1.19 7.46 -25.78 -0.19 -1.38 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.14 3.10 5.64 -52.49 -0.30 2.80 16 29 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.14 2.68 6.19 -52.49 -0.32 2.36 16 31 H 0.41 7.12 8.59 -40.82 -0.35 6.77 16 32 H 0.39 4.37 6.92 -40.82 -0.28 4.09 16 33 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.34 2.81 7.11 -39.29 -0.28 2.53 16 36 H 0.34 2.46 9.07 -39.29 -0.36 2.11 16 37 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.81 7.97 -51.93 -0.41 0.40 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -29.78 355.49 -7.77 -37.55 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -5.08 Total: 17.52 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.49 Total: -4.81 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.35 Total: -51.30 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.07 Total: -16.01 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.78 -7.77 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.474 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds