Wall clock time and date at job start Tue Mar 31 2020 14:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48508 * 109.46860 * 239.99206 * 3 2 1 5 5 H 1.48498 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47152 * 119.99662 * 3 2 1 7 7 C 1.38636 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00191 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00376 * 174.95210 * 9 7 2 11 11 C 1.38736 * 120.08692 * 5.43068 * 10 9 7 12 12 C 1.38344 * 119.97461 * 179.97438 * 11 10 9 13 13 F 1.35102 * 119.92193 * 179.97438 * 12 11 10 14 14 C 1.38543 * 120.15525 * 0.02562 * 12 11 10 15 15 C 1.38201 * 120.17105 * 359.74665 * 14 12 11 16 16 C 1.38692 * 120.02195 * 0.50945 * 15 14 12 17 17 N 1.40139 * 120.07376 * 179.77339 * 16 15 14 18 18 C 1.34772 * 119.99875 * 34.58710 * 17 16 15 19 19 O 1.21587 * 120.00539 * 355.63252 * 18 17 16 20 20 N 1.34787 * 119.99458 * 175.63007 * 18 17 16 21 21 C 1.46500 * 119.99892 * 180.02562 * 20 18 17 22 22 C 1.52991 * 109.47139 * 180.02562 * 21 20 18 23 23 N 1.46899 * 112.84891 * 48.80538 * 22 21 20 24 24 C 1.53780 * 113.61599 * 179.97438 * 22 21 20 25 25 C 1.53782 * 87.08299 * 139.98084 * 24 22 21 26 26 C 1.53778 * 87.17328 * 334.52814 * 25 24 22 27 27 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.01078 * 359.96136 * 11 10 9 29 29 H 1.08000 * 119.91329 * 180.02562 * 14 12 11 30 30 H 1.08000 * 119.98578 * 180.25418 * 15 14 12 31 31 H 0.96998 * 119.99370 * 214.59135 * 17 16 15 32 32 H 0.97002 * 119.99844 * 0.02562 * 20 18 17 33 33 H 1.09001 * 109.46676 * 59.99906 * 21 20 18 34 34 H 1.09003 * 109.46843 * 300.00457 * 21 20 18 35 35 H 1.00905 * 111.00134 * 311.19148 * 23 22 21 36 36 H 1.00902 * 111.00317 * 75.15275 * 23 22 21 37 37 H 1.08999 * 113.61341 * 25.43166 * 24 22 21 38 38 H 1.08998 * 113.69440 * 254.54364 * 24 22 21 39 39 H 1.09002 * 113.60948 * 89.11620 * 25 24 22 40 40 H 1.08995 * 113.61672 * 219.93474 * 25 24 22 41 41 H 1.09002 * 113.61784 * 140.01662 * 26 25 24 42 42 H 1.08997 * 113.61540 * 270.92534 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1034 1.6964 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0703 -3.5045 -0.1054 11 6 3.4561 -3.4397 -0.0939 12 6 4.2032 -4.5992 -0.2015 13 9 5.5526 -4.5348 -0.1907 14 6 3.5708 -5.8260 -0.3212 15 6 2.1907 -5.8982 -0.3285 16 6 1.4346 -4.7399 -0.2265 17 7 0.0351 -4.8115 -0.2386 18 6 -0.5909 -5.8614 0.3289 19 8 0.0585 -6.7847 0.7809 20 7 -1.9368 -5.8879 0.3956 21 6 -2.6173 -7.0289 1.0130 22 6 -4.1306 -6.8105 0.9587 23 7 -4.6025 -6.4157 -0.3752 24 6 -4.9415 -7.9579 1.5838 25 6 -5.8647 -6.8790 2.1741 26 6 -4.6667 -5.9182 2.0944 27 1 -0.4850 0.8400 -0.0004 28 1 3.9515 -2.4845 -0.0014 29 1 4.1578 -6.7287 -0.4044 30 1 1.7008 -6.8566 -0.4179 31 1 -0.4829 -4.1053 -0.6556 32 1 -2.4548 -5.1514 0.0347 33 1 -2.3003 -7.1223 2.0517 34 1 -2.3624 -7.9402 0.4719 35 1 -4.0443 -5.6622 -0.7479 36 1 -4.6109 -7.2048 -1.0040 37 1 -4.3912 -8.5215 2.3372 38 1 -5.4314 -8.5983 0.8504 39 1 -6.6898 -6.6034 1.5172 40 1 -6.1877 -7.0906 3.1933 41 1 -4.9344 -4.9121 1.7717 42 1 -4.0413 -5.9252 2.9872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841147105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:47 Heat of formation + Delta-G solvation = -68.732414 kcal Electronic energy + Delta-G solvation = -26972.969670 eV Core-core repulsion = 22868.301310 eV Total energy + Delta-G solvation = -4104.668360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.83257 -41.82560 -40.75082 -39.99416 -38.09543 -35.59691 -35.58179 -34.31187 -32.53301 -31.10726 -30.16550 -28.21258 -27.36208 -26.60560 -24.31739 -23.58515 -22.93409 -21.94975 -20.18218 -19.97657 -19.63159 -19.26968 -18.37362 -17.26219 -16.97326 -16.73491 -16.69724 -16.54595 -16.46359 -15.98771 -15.93069 -15.65050 -15.46117 -15.24033 -15.06105 -14.88334 -14.50893 -14.01796 -13.79785 -13.72147 -13.43752 -13.19756 -13.01978 -12.57638 -12.44219 -12.35330 -12.17545 -11.82351 -11.66706 -11.53415 -11.36887 -11.16278 -11.03230 -10.82186 -10.22050 -9.73368 -9.55500 -8.76225 -8.51071 -6.17404 0.20269 0.45983 1.37225 1.45427 1.50575 1.53317 2.00804 2.14351 2.67463 3.05080 3.06034 3.17356 3.39673 3.44924 3.56827 3.74328 3.82580 3.94209 3.99670 4.15869 4.35687 4.46942 4.55182 4.57200 4.69417 4.85456 4.89588 4.93406 5.01123 5.11263 5.12784 5.21679 5.25842 5.29490 5.34905 5.42459 5.49138 5.55106 5.83634 5.93108 6.05881 6.19600 6.45676 6.87354 6.93357 7.40902 7.62322 8.68919 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003560 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.297858 B = 7862.843534 C =10136.492211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.007 4.007 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.418 4.418 8 H 0.099 0.901 9 O -0.201 6.201 10 C 0.131 3.869 11 C -0.264 4.264 12 C 0.123 3.877 13 F -0.144 7.144 14 C -0.204 4.204 15 C -0.051 4.051 16 C 0.077 3.923 17 N -0.665 5.665 18 C 0.703 3.297 19 O -0.612 6.612 20 N -0.728 5.728 21 C 0.122 3.878 22 C 0.084 3.916 23 N -0.818 5.818 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.135 4.135 27 H 0.275 0.725 28 H 0.137 0.863 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.413 0.587 32 H 0.404 0.596 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.342 0.658 36 H 0.353 0.647 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 -12.102 -0.283 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.116 0.884 9 O -0.106 6.106 10 C 0.077 3.923 11 C -0.285 4.285 12 C 0.103 3.897 13 F -0.123 7.123 14 C -0.224 4.224 15 C -0.071 4.071 16 C -0.018 4.018 17 N -0.312 5.312 18 C 0.403 3.597 19 O -0.492 6.492 20 N -0.385 5.385 21 C -0.004 4.004 22 C -0.010 4.010 23 N -0.350 5.350 24 C -0.156 4.156 25 C -0.160 4.160 26 C -0.173 4.173 27 H 0.084 0.916 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.249 0.751 32 H 0.241 0.759 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.959 -12.555 0.522 15.433 hybrid contribution 1.309 1.481 -0.590 2.063 sum -7.650 -11.075 -0.069 13.460 Atomic orbital electron populations 1.70105 1.07494 1.29039 1.47393 1.26353 0.96821 1.02034 0.95465 0.84758 0.77587 0.74914 0.79753 1.18382 1.19435 1.18710 1.21712 0.92537 0.81174 1.53973 0.88391 1.83908 1.34646 1.11786 1.80287 1.19164 0.90153 0.87422 0.95533 1.20926 0.93320 0.99097 1.15174 1.17453 0.76238 0.94226 1.01827 1.91429 1.29479 1.97353 1.94055 1.20876 0.94511 0.96484 1.10505 1.20856 0.92494 0.97208 0.96574 1.16900 0.82541 0.91257 1.11125 1.42188 1.04595 1.24869 1.59528 1.16000 0.82788 0.82351 0.78539 1.90842 1.65543 1.37983 1.54867 1.44951 1.03495 1.25220 1.64792 1.22002 0.92809 0.87536 0.98063 1.22282 0.88661 0.98995 0.91073 1.58769 1.59104 1.14000 1.03103 1.22968 0.97087 0.95392 1.00182 1.22637 0.96441 0.95673 1.01280 1.23087 0.98395 0.98635 0.97199 0.91606 0.84579 0.82468 0.82994 0.75069 0.75892 0.92079 0.91620 0.84304 0.83247 0.88791 0.89935 0.89827 0.90862 0.91801 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.33 13.67 21.61 0.30 -50.03 16 2 C -0.01 -0.36 5.49 84.83 0.47 0.11 16 3 Si 1.01 40.44 29.55 68.60 2.03 42.47 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.42 -22.61 9.49 67.92 0.64 -21.97 16 8 H 0.10 4.98 5.20 -2.91 -0.02 4.96 16 9 O -0.20 -10.84 9.32 -22.79 -0.21 -11.05 16 10 C 0.13 6.16 6.66 22.68 0.15 6.31 16 11 C -0.26 -11.61 9.14 22.41 0.20 -11.41 16 12 C 0.12 4.74 7.29 22.37 0.16 4.90 16 13 F -0.14 -5.26 17.26 44.97 0.78 -4.49 16 14 C -0.20 -7.10 10.02 22.33 0.22 -6.88 16 15 C -0.05 -1.89 8.69 22.37 0.19 -1.70 16 16 C 0.08 3.21 6.33 38.22 0.24 3.46 16 17 N -0.66 -24.46 5.20 -316.70 -1.65 -26.11 16 18 C 0.70 23.93 8.41 179.05 1.51 25.44 16 19 O -0.61 -24.01 13.76 -3.99 -0.05 -24.06 16 20 N -0.73 -18.24 5.32 -478.53 -2.55 -20.79 16 21 C 0.12 2.60 5.30 86.38 0.46 3.06 16 22 C 0.08 1.38 1.30 4.14 0.01 1.38 16 23 N -0.82 -12.27 9.26 -149.14 -1.38 -13.65 16 24 C -0.12 -1.58 7.43 31.12 0.23 -1.35 16 25 C -0.12 -1.78 7.99 31.12 0.25 -1.53 16 26 C -0.14 -2.42 7.46 31.21 0.23 -2.18 16 27 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.14 6.05 5.64 -2.91 -0.02 6.03 16 29 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 30 H 0.15 5.44 6.19 -2.91 -0.02 5.42 16 31 H 0.41 14.68 8.59 -92.71 -0.80 13.88 16 32 H 0.40 8.78 6.92 -92.71 -0.64 8.14 16 33 H 0.06 1.46 7.95 -2.39 -0.02 1.44 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.34 5.25 7.11 -89.69 -0.64 4.61 16 36 H 0.35 4.40 9.07 -89.69 -0.81 3.58 16 37 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.50 7.97 -2.39 -0.02 1.48 16 Total: -1.00 -64.58 355.49 0.46 -64.12 By element: Atomic # 1 Polarization: 47.73 SS G_CDS: -1.77 Total: 45.97 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.97 Total: -2.37 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -5.28 Total: -110.58 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.27 Total: -35.12 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -64.58 0.46 -64.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.610 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds