Wall clock time and date at job start Tue Mar 31 2020 14:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48495 * 109.47209 * 270.00115 * 3 2 1 5 5 H 1.48501 * 109.47037 * 30.00181 * 3 2 1 6 6 H 1.48498 * 109.47158 * 149.99776 * 3 2 1 7 7 C 1.38639 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00053 * 0.02562 * 7 2 1 9 9 O 1.34804 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.35779 * 116.99575 * 185.51947 * 9 7 2 11 11 C 1.38734 * 120.08876 * 5.87395 * 10 9 7 12 12 C 1.38344 * 119.97735 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92633 * 179.97438 * 12 11 10 14 14 C 1.38548 * 120.15297 * 0.02914 * 12 11 10 15 15 C 1.38193 * 120.17106 * 359.94779 * 14 12 11 16 16 C 1.38692 * 120.02459 * 0.04932 * 15 14 12 17 17 N 1.40135 * 120.07786 * 180.25397 * 16 15 14 18 18 C 1.34779 * 119.99695 * 325.98725 * 17 16 15 19 19 O 1.21592 * 120.00141 * 354.33891 * 18 17 16 20 20 N 1.34780 * 120.00132 * 174.34294 * 18 17 16 21 21 C 1.46492 * 120.00143 * 179.97438 * 20 18 17 22 22 C 1.53005 * 109.47324 * 179.97438 * 21 20 18 23 23 N 1.46895 * 109.47590 * 180.02562 * 22 21 20 24 24 C 1.46892 * 111.00155 * 180.02562 * 23 22 21 25 25 C 1.53008 * 117.49890 * 223.74624 * 24 23 22 26 26 C 1.52999 * 117.50009 * 155.08748 * 24 23 22 27 27 H 0.97008 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.01204 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.91310 * 179.97438 * 14 12 11 30 30 H 1.08006 * 119.99198 * 180.02562 * 15 14 12 31 31 H 0.97001 * 120.00556 * 145.99012 * 17 16 15 32 32 H 0.97004 * 119.99748 * 0.02562 * 20 18 17 33 33 H 1.09000 * 109.47568 * 300.00184 * 21 20 18 34 34 H 1.09002 * 109.47038 * 60.00123 * 21 20 18 35 35 H 1.09009 * 109.46789 * 300.00435 * 22 21 20 36 36 H 1.09002 * 109.46918 * 60.00105 * 22 21 20 37 37 H 1.00904 * 110.99560 * 303.95529 * 23 22 21 38 38 H 1.08997 * 115.55139 * 9.41439 * 24 23 22 39 39 H 1.09005 * 117.49583 * 359.97438 * 25 24 23 40 40 H 1.08997 * 117.49772 * 145.01958 * 25 24 23 41 41 H 1.08999 * 117.49928 * 214.97791 * 26 24 23 42 42 H 1.09005 * 117.50030 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3569 -1.2006 0.0000 10 6 3.9732 -2.4049 -0.1158 11 6 3.2249 -3.5496 -0.3487 12 6 3.8552 -4.7756 -0.4658 13 9 3.1255 -5.8898 -0.6922 14 6 5.2331 -4.8635 -0.3503 15 6 5.9846 -3.7272 -0.1188 16 6 5.3602 -2.4944 -0.0002 17 7 6.1217 -1.3406 0.2293 18 6 7.2389 -1.4089 0.9800 19 8 7.5309 -2.4466 1.5426 20 7 8.0325 -0.3270 1.1072 21 6 9.2466 -0.4011 1.9237 22 6 9.9602 0.9522 1.9005 23 7 11.1780 0.8778 2.7186 24 6 11.8904 2.1624 2.7202 25 6 13.4108 2.1272 2.5520 26 6 12.7986 2.4651 3.9137 27 1 -0.4850 0.8401 -0.0004 28 1 2.1507 -3.4838 -0.4387 29 1 5.7211 -5.8226 -0.4420 30 1 7.0586 -3.7990 -0.0297 31 1 5.8447 -0.4928 -0.1520 32 1 7.7994 0.5009 0.6588 33 1 8.9797 -0.6539 2.9498 34 1 9.9089 -1.1676 1.5212 35 1 10.2272 1.2046 0.8742 36 1 9.2981 1.7190 2.3027 37 1 10.9640 0.5822 3.6593 38 1 11.3537 2.9982 2.2714 39 1 13.8824 1.1507 2.4407 40 1 13.8743 2.9401 1.9930 41 1 12.8596 3.5001 4.2499 42 1 12.8671 1.7112 4.6980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841147143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:05 Heat of formation + Delta-G solvation = -39.636755 kcal Electronic energy + Delta-G solvation = -26148.668708 eV Core-core repulsion = 22045.262030 eV Total energy + Delta-G solvation = -4103.406677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.27630 -40.38809 -39.01858 -38.30132 -36.68309 -35.55356 -34.18286 -33.16039 -32.51801 -29.62627 -28.95833 -27.33022 -25.42879 -23.09497 -22.75907 -22.20532 -21.72629 -21.44416 -20.60449 -18.48162 -18.23962 -17.85758 -16.97264 -16.52529 -16.19476 -15.62653 -15.53061 -15.32038 -15.08098 -15.00009 -14.55511 -14.15984 -14.11706 -13.82550 -13.75989 -13.42249 -13.25150 -13.00346 -12.51570 -12.40730 -12.25585 -11.91632 -11.85995 -11.71493 -11.46359 -11.09872 -10.99248 -10.79846 -10.76064 -10.49658 -10.04093 -9.78700 -9.58657 -9.12833 -9.01979 -8.78678 -7.97722 -7.23207 -6.55645 -4.22485 1.75148 2.01646 2.63492 3.07932 3.11258 3.20704 3.32376 3.39369 3.64392 4.07001 4.23723 4.35126 4.49458 4.53598 4.56529 4.64214 4.65271 4.92433 4.93728 4.98081 5.13323 5.19237 5.25496 5.47818 5.53988 5.64717 5.68861 5.72495 5.78090 5.90796 6.06436 6.34535 6.41905 6.55975 6.62078 6.81338 6.84799 6.85121 6.98806 7.11031 7.44480 7.64514 7.86228 8.08466 8.70157 8.77536 9.33085 10.51678 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.002948 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.859460 B = 9495.999157 C =11795.732644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.209 6.209 10 C 0.164 3.836 11 C -0.244 4.244 12 C 0.128 3.872 13 F -0.149 7.149 14 C -0.219 4.219 15 C -0.051 4.051 16 C 0.082 3.918 17 N -0.668 5.668 18 C 0.705 3.295 19 O -0.579 6.579 20 N -0.747 5.747 21 C 0.142 3.858 22 C 0.050 3.950 23 N -0.656 5.656 24 C 0.015 3.985 25 C -0.169 4.169 26 C -0.194 4.194 27 H 0.281 0.719 28 H 0.149 0.851 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.407 0.593 32 H 0.396 0.604 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.347 0.653 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.547 5.231 2.633 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.109 3.891 11 C -0.265 4.265 12 C 0.108 3.892 13 F -0.127 7.127 14 C -0.239 4.239 15 C -0.071 4.071 16 C -0.013 4.013 17 N -0.316 5.316 18 C 0.405 3.595 19 O -0.456 6.456 20 N -0.404 5.404 21 C 0.017 3.983 22 C -0.080 4.080 23 N -0.287 5.287 24 C -0.095 4.095 25 C -0.207 4.207 26 C -0.232 4.232 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.242 0.758 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.166 0.834 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.059 4.367 2.680 21.674 hybrid contribution -0.952 1.868 0.180 2.104 sum 20.108 6.235 2.860 21.245 Atomic orbital electron populations 1.69646 1.05580 1.28689 1.46969 1.24477 0.95044 0.98816 0.95582 0.86181 0.80277 0.81509 0.78860 1.19749 1.20640 1.18520 1.20760 0.76431 0.96853 1.52469 0.87405 1.83524 1.23037 1.24766 1.80045 1.18511 0.89210 0.86063 0.95327 1.20977 1.02161 0.90581 1.12757 1.17451 0.89080 0.81937 1.00755 1.91428 1.77915 1.51208 1.92195 1.20520 0.91636 0.99321 1.12431 1.20496 1.00003 0.89687 0.96934 1.16610 0.86564 0.86858 1.11280 1.42207 1.24766 1.11275 1.53312 1.15811 0.80188 0.83911 0.79547 1.90924 1.74216 1.29351 1.51081 1.44913 1.26080 1.13832 1.55541 1.21012 0.84721 0.97019 0.95572 1.22138 0.90279 0.96366 0.99176 1.60044 1.23757 1.27418 1.17498 1.22354 0.92263 0.91845 1.03086 1.23156 0.95446 1.03235 0.98852 1.23283 1.05075 1.02610 0.92198 0.90830 0.83325 0.85695 0.84412 0.75787 0.77005 0.91642 0.90504 0.90027 0.94168 0.83370 0.88106 0.88154 0.88818 0.88668 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.15 13.96 55.48 0.77 -23.38 16 2 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 3 Si 0.91 19.90 28.62 -169.99 -4.86 15.04 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.37 9.90 30.88 0.31 -10.06 16 8 H 0.11 2.99 5.53 -52.49 -0.29 2.70 16 9 O -0.21 -5.03 8.13 0.03 0.00 -5.03 16 10 C 0.16 3.59 6.66 -38.94 -0.26 3.33 16 11 C -0.24 -5.27 9.11 -39.36 -0.36 -5.63 16 12 C 0.13 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.22 -3.92 10.02 -39.48 -0.40 -4.32 16 15 C -0.05 -0.93 8.66 -39.43 -0.34 -1.27 16 16 C 0.08 1.59 6.29 -83.44 -0.52 1.07 16 17 N -0.67 -11.26 5.21 -14.07 -0.07 -11.33 16 18 C 0.70 11.35 8.29 -86.91 -0.72 10.63 16 19 O -0.58 -11.16 14.09 5.28 0.07 -11.08 16 20 N -0.75 -8.62 5.56 -65.22 -0.36 -8.98 16 21 C 0.14 1.42 5.93 -4.04 -0.02 1.40 16 22 C 0.05 0.38 5.65 -3.82 -0.02 0.36 16 23 N -0.66 -4.95 6.75 -106.72 -0.72 -5.67 16 24 C 0.01 0.10 6.25 -67.71 -0.42 -0.32 16 25 C -0.17 -1.08 10.46 -26.69 -0.28 -1.36 16 26 C -0.19 -1.14 10.34 -26.69 -0.28 -1.41 16 27 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.15 3.36 5.72 -52.49 -0.30 3.06 16 29 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.14 2.43 6.46 -52.48 -0.34 2.09 16 31 H 0.41 6.16 8.57 -40.82 -0.35 5.81 16 32 H 0.40 3.54 8.49 -40.82 -0.35 3.20 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.35 2.39 8.69 -39.29 -0.34 2.05 16 38 H 0.10 0.64 7.90 -51.93 -0.41 0.23 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -30.24 364.11 -8.66 -38.90 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.32 Total: 12.59 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.70 Total: -3.74 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.38 Total: -49.36 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.07 Total: -16.11 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.86 Total: 15.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.24 -8.66 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.734 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds