Wall clock time and date at job start Tue Mar 31 2020 14:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48495 * 109.47209 * 270.00115 * 3 2 1 5 5 H 1.48501 * 109.47037 * 30.00181 * 3 2 1 6 6 H 1.48498 * 109.47158 * 149.99776 * 3 2 1 7 7 C 1.38639 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00053 * 0.02562 * 7 2 1 9 9 O 1.34804 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.35779 * 116.99575 * 185.51947 * 9 7 2 11 11 C 1.38734 * 120.08876 * 5.87395 * 10 9 7 12 12 C 1.38344 * 119.97735 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92633 * 179.97438 * 12 11 10 14 14 C 1.38548 * 120.15297 * 0.02914 * 12 11 10 15 15 C 1.38193 * 120.17106 * 359.94779 * 14 12 11 16 16 C 1.38692 * 120.02459 * 0.04932 * 15 14 12 17 17 N 1.40135 * 120.07786 * 180.25397 * 16 15 14 18 18 C 1.34779 * 119.99695 * 325.98725 * 17 16 15 19 19 O 1.21592 * 120.00141 * 354.33891 * 18 17 16 20 20 N 1.34780 * 120.00132 * 174.34294 * 18 17 16 21 21 C 1.46492 * 120.00143 * 179.97438 * 20 18 17 22 22 C 1.53005 * 109.47324 * 179.97438 * 21 20 18 23 23 N 1.46895 * 109.47590 * 180.02562 * 22 21 20 24 24 C 1.46892 * 111.00155 * 180.02562 * 23 22 21 25 25 C 1.53008 * 117.49890 * 223.74624 * 24 23 22 26 26 C 1.52999 * 117.50009 * 155.08748 * 24 23 22 27 27 H 0.97008 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.01204 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.91310 * 179.97438 * 14 12 11 30 30 H 1.08006 * 119.99198 * 180.02562 * 15 14 12 31 31 H 0.97001 * 120.00556 * 145.99012 * 17 16 15 32 32 H 0.97004 * 119.99748 * 0.02562 * 20 18 17 33 33 H 1.09000 * 109.47568 * 300.00184 * 21 20 18 34 34 H 1.09002 * 109.47038 * 60.00123 * 21 20 18 35 35 H 1.09009 * 109.46789 * 300.00435 * 22 21 20 36 36 H 1.09002 * 109.46918 * 60.00105 * 22 21 20 37 37 H 1.00904 * 110.99560 * 303.95529 * 23 22 21 38 38 H 1.08997 * 115.55139 * 9.41439 * 24 23 22 39 39 H 1.09005 * 117.49583 * 359.97438 * 25 24 23 40 40 H 1.08997 * 117.49772 * 145.01958 * 25 24 23 41 41 H 1.08999 * 117.49928 * 214.97791 * 26 24 23 42 42 H 1.09005 * 117.50030 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3569 -1.2006 0.0000 10 6 3.9732 -2.4049 -0.1158 11 6 3.2249 -3.5496 -0.3487 12 6 3.8552 -4.7756 -0.4658 13 9 3.1255 -5.8898 -0.6922 14 6 5.2331 -4.8635 -0.3503 15 6 5.9846 -3.7272 -0.1188 16 6 5.3602 -2.4944 -0.0002 17 7 6.1217 -1.3406 0.2293 18 6 7.2389 -1.4089 0.9800 19 8 7.5309 -2.4466 1.5426 20 7 8.0325 -0.3270 1.1072 21 6 9.2466 -0.4011 1.9237 22 6 9.9602 0.9522 1.9005 23 7 11.1780 0.8778 2.7186 24 6 11.8904 2.1624 2.7202 25 6 13.4108 2.1272 2.5520 26 6 12.7986 2.4651 3.9137 27 1 -0.4850 0.8401 -0.0004 28 1 2.1507 -3.4838 -0.4387 29 1 5.7211 -5.8226 -0.4420 30 1 7.0586 -3.7990 -0.0297 31 1 5.8447 -0.4928 -0.1520 32 1 7.7994 0.5009 0.6588 33 1 8.9797 -0.6539 2.9498 34 1 9.9089 -1.1676 1.5212 35 1 10.2272 1.2046 0.8742 36 1 9.2981 1.7190 2.3027 37 1 10.9640 0.5822 3.6593 38 1 11.3537 2.9982 2.2714 39 1 13.8824 1.1507 2.4407 40 1 13.8743 2.9401 1.9930 41 1 12.8596 3.5001 4.2499 42 1 12.8671 1.7112 4.6980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841147143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:04 Heat of formation + Delta-G solvation = -60.926937 kcal Electronic energy + Delta-G solvation = -26149.591919 eV Core-core repulsion = 22045.262030 eV Total energy + Delta-G solvation = -4104.329889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.84854 -41.80367 -40.53741 -38.90035 -38.24112 -36.50775 -35.61469 -34.47644 -33.95720 -31.24604 -30.31502 -28.37693 -27.29380 -24.34421 -23.47756 -23.24710 -22.94282 -22.21163 -21.79527 -20.15070 -19.79848 -19.37190 -18.37435 -17.40981 -17.15058 -17.07242 -16.73202 -16.61733 -16.30385 -16.18985 -15.88815 -15.62826 -15.55948 -15.23349 -15.05056 -14.97482 -14.39800 -14.23277 -13.89748 -13.57004 -13.54382 -13.18273 -13.02298 -12.61933 -12.45850 -12.38840 -12.31929 -12.17470 -11.67218 -11.61921 -11.44569 -11.22991 -11.11313 -10.93038 -10.18119 -9.62072 -9.32042 -8.80637 -8.51733 -6.25906 0.15883 0.40183 1.33212 1.38457 1.49811 1.52663 2.00701 2.26750 2.60500 2.81675 2.88378 2.95715 2.98815 3.36453 3.38453 3.87630 3.90679 4.04258 4.05751 4.12453 4.14969 4.27394 4.36454 4.48023 4.53014 4.67724 4.82683 4.85377 4.91189 4.95377 5.10071 5.11912 5.17154 5.26133 5.31332 5.39579 5.46594 5.59287 5.80427 5.90220 6.01563 6.08711 6.31282 6.79870 6.92251 7.38772 7.48244 8.59317 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.002948 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.859460 B = 9495.999157 C =11795.732644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.401 4.401 8 H 0.078 0.922 9 O -0.220 6.220 10 C 0.138 3.862 11 C -0.255 4.255 12 C 0.117 3.883 13 F -0.146 7.146 14 C -0.191 4.191 15 C -0.050 4.050 16 C 0.093 3.907 17 N -0.668 5.668 18 C 0.704 3.296 19 O -0.611 6.611 20 N -0.727 5.727 21 C 0.145 3.855 22 C 0.062 3.938 23 N -0.665 5.665 24 C 0.007 3.993 25 C -0.174 4.174 26 C -0.188 4.188 27 H 0.286 0.714 28 H 0.126 0.874 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.416 0.584 32 H 0.412 0.588 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.349 0.651 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.612 6.292 2.704 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.477 4.477 8 H 0.095 0.905 9 O -0.126 6.126 10 C 0.086 3.914 11 C -0.276 4.276 12 C 0.097 3.903 13 F -0.125 7.125 14 C -0.210 4.210 15 C -0.070 4.070 16 C -0.002 4.002 17 N -0.316 5.316 18 C 0.404 3.596 19 O -0.491 6.491 20 N -0.384 5.384 21 C 0.020 3.980 22 C -0.068 4.068 23 N -0.297 5.297 24 C -0.103 4.103 25 C -0.212 4.212 26 C -0.226 4.226 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.179 0.821 30 H 0.171 0.829 31 H 0.253 0.747 32 H 0.249 0.751 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.169 0.831 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 24.176 5.442 2.742 24.932 hybrid contribution -1.728 1.304 0.169 2.171 sum 22.448 6.747 2.911 23.620 Atomic orbital electron populations 1.69748 1.07284 1.29864 1.49091 1.25376 0.95884 1.02539 0.95056 0.85173 0.79244 0.76549 0.79539 1.18511 1.20026 1.17169 1.20632 0.77702 0.96184 1.53218 0.90486 1.83466 1.21356 1.25562 1.82220 1.18821 0.90311 0.85631 0.96652 1.20976 1.01363 0.91885 1.13366 1.17493 0.89888 0.81317 1.01560 1.91433 1.78058 1.50774 1.92219 1.20919 0.90558 1.00792 1.08771 1.20743 1.00726 0.89218 0.96352 1.16755 0.85775 0.88352 1.09351 1.42193 1.24810 1.10931 1.53621 1.15934 0.80073 0.84482 0.79090 1.90899 1.74911 1.30930 1.52327 1.44791 1.25492 1.13234 1.54851 1.21058 0.83874 0.98424 0.94625 1.22005 0.90263 0.94782 0.99716 1.60030 1.23749 1.28167 1.17758 1.22434 0.92337 0.91646 1.03908 1.23194 0.95295 1.03161 0.99553 1.23329 1.04130 1.03218 0.91885 0.90452 0.85580 0.82126 0.82879 0.74747 0.75127 0.92431 0.91498 0.89368 0.93193 0.83112 0.87414 0.89091 0.87871 0.87630 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.90 13.96 21.61 0.30 -52.60 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 40.88 28.62 68.60 1.96 42.85 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.40 -22.26 9.90 67.92 0.67 -21.59 16 8 H 0.08 4.60 5.53 -2.91 -0.02 4.59 16 9 O -0.22 -10.73 8.13 -22.80 -0.19 -10.92 16 10 C 0.14 6.12 6.66 22.68 0.15 6.28 16 11 C -0.26 -11.32 9.11 22.41 0.20 -11.11 16 12 C 0.12 4.52 7.29 22.37 0.16 4.69 16 13 F -0.15 -5.49 17.26 44.97 0.78 -4.71 16 14 C -0.19 -6.31 10.02 22.33 0.22 -6.09 16 15 C -0.05 -1.70 8.66 22.37 0.19 -1.51 16 16 C 0.09 3.52 6.29 38.22 0.24 3.76 16 17 N -0.67 -21.19 5.21 -316.69 -1.65 -22.84 16 18 C 0.70 21.10 8.29 179.05 1.48 22.58 16 19 O -0.61 -22.34 14.09 -4.01 -0.06 -22.40 16 20 N -0.73 -14.86 5.56 -478.53 -2.66 -17.53 16 21 C 0.14 2.59 5.93 86.38 0.51 3.11 16 22 C 0.06 0.77 5.65 86.31 0.49 1.26 16 23 N -0.67 -8.69 6.75 -491.57 -3.32 -12.01 16 24 C 0.01 0.08 6.25 44.92 0.28 0.36 16 25 C -0.17 -1.93 10.46 30.62 0.32 -1.61 16 26 C -0.19 -1.83 10.34 30.62 0.32 -1.51 16 27 H 0.29 15.05 8.31 -92.70 -0.77 14.28 16 28 H 0.13 6.14 5.72 -2.91 -0.02 6.12 16 29 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.15 4.91 6.46 -2.91 -0.02 4.89 16 31 H 0.42 11.69 8.57 -92.71 -0.79 10.90 16 32 H 0.41 6.02 8.49 -92.71 -0.79 5.24 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.35 4.20 8.69 -89.69 -0.78 3.42 16 38 H 0.11 1.08 7.90 -2.39 -0.02 1.06 16 39 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -66.76 364.11 -0.37 -67.13 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -1.26 Total: 33.37 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.72 Total: -0.35 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -7.32 Total: -104.97 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.24 Total: -33.32 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.96 Total: 42.85 kcal Total: -66.76 -0.37 -67.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.205 kcal (2) G-P(sol) polarization free energy of solvation -66.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds