Wall clock time and date at job start Tue Mar 31 2020 14:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48492 * 109.47379 * 269.99922 * 3 2 1 5 5 H 1.48501 * 109.46681 * 30.00303 * 3 2 1 6 6 H 1.48503 * 109.47058 * 150.00030 * 3 2 1 7 7 C 1.38636 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00458 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99878 * 185.38220 * 9 7 2 11 11 C 1.38738 * 120.08934 * 2.05627 * 10 9 7 12 12 C 1.38342 * 119.97560 * 180.02562 * 11 10 9 13 13 F 1.35107 * 119.92353 * 179.97438 * 12 11 10 14 14 C 1.38544 * 120.15568 * 359.97438 * 12 11 10 15 15 C 1.38200 * 120.17402 * 359.75294 * 14 12 11 16 16 C 1.38698 * 120.01722 * 0.50138 * 15 14 12 17 17 N 1.40138 * 120.07365 * 179.77100 * 16 15 14 18 18 C 1.34776 * 119.99889 * 337.70232 * 17 16 15 19 19 O 1.21587 * 120.00035 * 354.58397 * 18 17 16 20 20 N 1.34775 * 119.99613 * 174.30164 * 18 17 16 21 21 C 1.46497 * 119.99969 * 180.27772 * 20 18 17 22 22 H 1.08998 * 109.47247 * 20.79244 * 21 20 18 23 23 C 1.53003 * 109.47401 * 260.79521 * 21 20 18 24 24 N 1.46901 * 109.46907 * 54.99612 * 23 21 20 25 25 C 1.52994 * 109.47381 * 140.79203 * 21 20 18 26 26 C 1.53000 * 117.50168 * 252.57889 * 25 21 20 27 27 C 1.53000 * 117.50344 * 183.91676 * 25 21 20 28 28 H 0.97002 * 120.00023 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.01080 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.91213 * 179.97438 * 14 12 11 31 31 H 1.07996 * 119.99359 * 180.27469 * 15 14 12 32 32 H 0.96999 * 119.99673 * 157.70555 * 17 16 15 33 33 H 0.97003 * 120.00438 * 0.28151 * 20 18 17 34 34 H 1.08995 * 109.47118 * 174.99976 * 23 21 20 35 35 H 1.08999 * 109.46932 * 294.99668 * 23 21 20 36 36 H 1.00898 * 111.00097 * 56.05157 * 24 23 21 37 37 H 1.00902 * 110.99787 * 179.97438 * 24 23 21 38 38 H 1.09002 * 115.55013 * 38.25160 * 25 21 20 39 39 H 1.09000 * 117.49792 * 0.02562 * 26 25 21 40 40 H 1.09000 * 117.50110 * 145.01524 * 26 25 21 41 41 H 1.08994 * 117.50296 * 214.98220 * 27 25 21 42 42 H 1.09002 * 117.49848 * 359.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0697 -3.5042 0.1124 11 6 3.4467 -3.4296 0.2640 12 6 4.1933 -4.5886 0.3783 13 9 5.5343 -4.5148 0.5254 14 6 3.5691 -5.8249 0.3424 15 6 2.1971 -5.9064 0.1973 16 6 1.4422 -4.7492 0.0767 17 7 0.0515 -4.8306 -0.0753 18 6 -0.5097 -5.9612 -0.5477 19 8 0.1945 -6.8739 -0.9344 20 7 -1.8515 -6.0824 -0.5861 21 6 -2.4615 -7.3137 -1.0939 22 1 -1.7363 -8.1259 -1.0438 23 6 -2.8955 -7.1066 -2.5464 24 7 -1.7465 -6.6514 -3.3405 25 6 -3.6824 -7.6669 -0.2422 26 6 -3.5586 -8.8573 0.7109 27 6 -4.4083 -8.9765 -0.5567 28 1 -0.4850 0.8401 0.0004 29 1 3.9357 -2.4670 0.2927 30 1 4.1558 -6.7273 0.4316 31 1 1.7131 -6.8716 0.1741 32 1 -0.5072 -4.0732 0.1594 33 1 -2.4133 -5.3543 -0.2776 34 1 -3.2678 -8.0473 -2.9520 35 1 -3.6849 -6.3561 -2.5862 36 1 -0.9769 -7.2996 -3.2675 37 1 -2.0075 -6.5076 -4.3046 38 1 -4.2882 -6.8216 0.0843 39 1 -2.6071 -9.3886 0.7315 40 1 -4.0831 -8.7953 1.6644 41 1 -5.4915 -8.9929 -0.4367 42 1 -4.0163 -9.5863 -1.3707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841147171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:15 Heat of formation + Delta-G solvation = -42.176974 kcal Electronic energy + Delta-G solvation = -27202.206183 eV Core-core repulsion = 23098.689353 eV Total energy + Delta-G solvation = -4103.516829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.14985 -40.28121 -39.00081 -37.92915 -36.25553 -34.91460 -33.91937 -32.92840 -32.34010 -29.34364 -28.66235 -27.19589 -25.43251 -23.38755 -22.45670 -22.30652 -21.58265 -20.61432 -20.32421 -18.27542 -18.10809 -17.48382 -16.95196 -16.23127 -15.81601 -15.39217 -15.14544 -14.94115 -14.84661 -14.53218 -14.25630 -14.21273 -13.80579 -13.69528 -13.48312 -13.43967 -13.26840 -13.03561 -12.23916 -12.10649 -11.99305 -11.74905 -11.58751 -11.34697 -11.25897 -10.94559 -10.75806 -10.64431 -10.49907 -10.33193 -9.73485 -9.70406 -9.36818 -8.90649 -8.85091 -8.53569 -7.76740 -6.91358 -6.54576 -4.11459 1.97468 2.21865 2.93962 3.10202 3.11517 3.15908 3.50421 3.66920 3.89937 4.25484 4.47760 4.50802 4.65112 4.74507 4.85497 4.96376 5.02671 5.13599 5.16276 5.20877 5.28411 5.35594 5.46697 5.65510 5.67621 5.75873 5.83061 5.87056 6.00604 6.12420 6.32135 6.61836 6.75575 6.78213 7.00737 7.05510 7.16964 7.19589 7.25870 7.43368 7.49855 7.77616 7.90289 8.41707 8.91628 9.00253 9.54516 10.62837 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.003629 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.461677 B = 7713.529814 C = 9345.157752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.151 3.849 11 C -0.256 4.256 12 C 0.119 3.881 13 F -0.154 7.154 14 C -0.223 4.223 15 C -0.069 4.069 16 C 0.091 3.909 17 N -0.664 5.664 18 C 0.718 3.282 19 O -0.587 6.587 20 N -0.726 5.726 21 C 0.194 3.806 22 H 0.094 0.906 23 C 0.053 3.947 24 N -0.842 5.842 25 C -0.164 4.164 26 C -0.173 4.173 27 C -0.172 4.172 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.412 0.588 33 H 0.396 0.604 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.348 0.652 37 H 0.337 0.663 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 -13.354 -1.024 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.095 3.905 11 C -0.277 4.277 12 C 0.099 3.901 13 F -0.133 7.133 14 C -0.244 4.244 15 C -0.090 4.090 16 C -0.004 4.004 17 N -0.309 5.309 18 C 0.419 3.581 19 O -0.467 6.467 20 N -0.379 5.379 21 C 0.088 3.912 22 H 0.112 0.888 23 C -0.079 4.079 24 N -0.372 5.372 25 C -0.183 4.183 26 C -0.210 4.210 27 C -0.210 4.210 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.171 0.829 32 H 0.248 0.752 33 H 0.229 0.771 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.161 0.839 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.000 -13.320 -0.900 15.564 hybrid contribution 0.011 0.870 -0.331 0.931 sum -7.989 -12.450 -1.231 14.844 Atomic orbital electron populations 1.70007 1.05900 1.27837 1.45841 1.25253 0.95884 0.98766 0.96304 0.85700 0.79009 0.79904 0.78824 1.19818 1.20229 1.19089 1.21319 0.91940 0.80462 1.52864 0.88918 1.83914 1.33857 1.11268 1.78473 1.18716 0.89517 0.86949 0.95301 1.20810 0.93662 0.98299 1.14938 1.17459 0.76206 0.94333 1.02112 1.91401 1.31057 1.97374 1.93433 1.20502 0.94996 0.95452 1.13431 1.20933 0.92316 0.98023 0.97722 1.16723 0.81924 0.91249 1.10531 1.42231 1.05935 1.16087 1.66657 1.15648 0.81922 0.82819 0.77719 1.90753 1.60646 1.40640 1.54621 1.44746 1.04906 1.18894 1.69362 1.20306 0.92570 0.87597 0.90743 0.88764 1.22153 0.93774 0.98382 0.93606 1.58500 1.08972 1.55043 1.14684 1.22504 0.99714 0.93122 1.02990 1.23031 1.02061 1.01469 0.94453 1.22930 0.98781 0.99451 0.99817 0.91947 0.84079 0.86153 0.82908 0.75186 0.77087 0.95183 0.91040 0.83872 0.85092 0.87256 0.88511 0.88666 0.88569 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.75 13.67 55.48 0.76 -22.99 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.45 9.47 30.88 0.29 -10.16 16 8 H 0.09 2.35 5.23 -52.49 -0.27 2.08 16 9 O -0.17 -4.56 9.14 0.02 0.00 -4.56 16 10 C 0.15 3.56 6.67 -38.94 -0.26 3.30 16 11 C -0.26 -5.75 9.13 -39.36 -0.36 -6.11 16 12 C 0.12 2.45 7.29 -39.43 -0.29 2.17 16 13 F -0.15 -3.04 17.26 2.25 0.04 -3.00 16 14 C -0.22 -4.29 10.02 -39.48 -0.40 -4.69 16 15 C -0.07 -1.37 8.75 -39.43 -0.34 -1.72 16 16 C 0.09 1.94 6.49 -83.43 -0.54 1.40 16 17 N -0.66 -12.58 5.32 -14.07 -0.07 -12.65 16 18 C 0.72 12.34 8.00 -86.92 -0.70 11.65 16 19 O -0.59 -11.17 12.50 5.29 0.07 -11.10 16 20 N -0.73 -9.54 4.77 -58.68 -0.28 -9.82 16 21 C 0.19 2.13 2.64 -67.93 -0.18 1.95 16 22 H 0.09 1.20 6.96 -51.93 -0.36 0.84 16 23 C 0.05 0.55 6.30 -3.82 -0.02 0.52 16 24 N -0.84 -10.34 9.01 -10.37 -0.09 -10.43 16 25 C -0.16 -1.41 5.36 -90.62 -0.49 -1.89 16 26 C -0.17 -1.42 10.18 -26.69 -0.27 -1.69 16 27 C -0.17 -1.23 9.86 -26.69 -0.26 -1.49 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.14 3.17 5.65 -52.49 -0.30 2.87 16 30 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.15 2.96 5.59 -52.49 -0.29 2.67 16 32 H 0.41 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.40 4.62 8.77 -40.82 -0.36 4.26 16 34 H 0.03 0.26 7.73 -51.93 -0.40 -0.14 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 4.59 8.68 -39.29 -0.34 4.25 16 37 H 0.34 3.50 9.08 -39.29 -0.36 3.15 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.65 7.91 -51.93 -0.41 0.24 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -30.11 359.10 -8.21 -38.32 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -5.10 Total: 21.60 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.91 Total: -5.74 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.31 Total: -55.89 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.07 Total: -15.66 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.11 -8.21 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.861 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds