Wall clock time and date at job start Tue Mar 31 2020 14:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 120.00230 * 2 1 4 4 H 1.48492 * 109.47379 * 269.99922 * 3 2 1 5 5 H 1.48501 * 109.46681 * 30.00303 * 3 2 1 6 6 H 1.48503 * 109.47058 * 150.00030 * 3 2 1 7 7 C 1.38636 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00458 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99878 * 185.38220 * 9 7 2 11 11 C 1.38738 * 120.08934 * 2.05627 * 10 9 7 12 12 C 1.38342 * 119.97560 * 180.02562 * 11 10 9 13 13 F 1.35107 * 119.92353 * 179.97438 * 12 11 10 14 14 C 1.38544 * 120.15568 * 359.97438 * 12 11 10 15 15 C 1.38200 * 120.17402 * 359.75294 * 14 12 11 16 16 C 1.38698 * 120.01722 * 0.50138 * 15 14 12 17 17 N 1.40138 * 120.07365 * 179.77100 * 16 15 14 18 18 C 1.34776 * 119.99889 * 337.70232 * 17 16 15 19 19 O 1.21587 * 120.00035 * 354.58397 * 18 17 16 20 20 N 1.34775 * 119.99613 * 174.30164 * 18 17 16 21 21 C 1.46497 * 119.99969 * 180.27772 * 20 18 17 22 22 H 1.08998 * 109.47247 * 20.79244 * 21 20 18 23 23 C 1.53003 * 109.47401 * 260.79521 * 21 20 18 24 24 N 1.46901 * 109.46907 * 54.99612 * 23 21 20 25 25 C 1.52994 * 109.47381 * 140.79203 * 21 20 18 26 26 C 1.53000 * 117.50168 * 252.57889 * 25 21 20 27 27 C 1.53000 * 117.50344 * 183.91676 * 25 21 20 28 28 H 0.97002 * 120.00023 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.01080 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.91213 * 179.97438 * 14 12 11 31 31 H 1.07996 * 119.99359 * 180.27469 * 15 14 12 32 32 H 0.96999 * 119.99673 * 157.70555 * 17 16 15 33 33 H 0.97003 * 120.00438 * 0.28151 * 20 18 17 34 34 H 1.08995 * 109.47118 * 174.99976 * 23 21 20 35 35 H 1.08999 * 109.46932 * 294.99668 * 23 21 20 36 36 H 1.00898 * 111.00097 * 56.05157 * 24 23 21 37 37 H 1.00902 * 110.99787 * 179.97438 * 24 23 21 38 38 H 1.09002 * 115.55013 * 38.25160 * 25 21 20 39 39 H 1.09000 * 117.49792 * 0.02562 * 26 25 21 40 40 H 1.09000 * 117.50110 * 145.01524 * 26 25 21 41 41 H 1.08994 * 117.50296 * 214.98220 * 27 25 21 42 42 H 1.09002 * 117.49848 * 359.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0697 -3.5042 0.1124 11 6 3.4467 -3.4296 0.2640 12 6 4.1933 -4.5886 0.3783 13 9 5.5343 -4.5148 0.5254 14 6 3.5691 -5.8249 0.3424 15 6 2.1971 -5.9064 0.1973 16 6 1.4422 -4.7492 0.0767 17 7 0.0515 -4.8306 -0.0753 18 6 -0.5097 -5.9612 -0.5477 19 8 0.1945 -6.8739 -0.9344 20 7 -1.8515 -6.0824 -0.5861 21 6 -2.4615 -7.3137 -1.0939 22 1 -1.7363 -8.1259 -1.0438 23 6 -2.8955 -7.1066 -2.5464 24 7 -1.7465 -6.6514 -3.3405 25 6 -3.6824 -7.6669 -0.2422 26 6 -3.5586 -8.8573 0.7109 27 6 -4.4083 -8.9765 -0.5567 28 1 -0.4850 0.8401 0.0004 29 1 3.9357 -2.4670 0.2927 30 1 4.1558 -6.7273 0.4316 31 1 1.7131 -6.8716 0.1741 32 1 -0.5072 -4.0732 0.1594 33 1 -2.4133 -5.3543 -0.2776 34 1 -3.2678 -8.0473 -2.9520 35 1 -3.6849 -6.3561 -2.5862 36 1 -0.9769 -7.2996 -3.2675 37 1 -2.0075 -6.5076 -4.3046 38 1 -4.2882 -6.8216 0.0843 39 1 -2.6071 -9.3886 0.7315 40 1 -4.0831 -8.7953 1.6644 41 1 -5.4915 -8.9929 -0.4367 42 1 -4.0163 -9.5863 -1.3707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841147171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:14 Heat of formation + Delta-G solvation = -63.143819 kcal Electronic energy + Delta-G solvation = -27203.115373 eV Core-core repulsion = 23098.689353 eV Total energy + Delta-G solvation = -4104.426020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.77371 -41.72940 -40.49472 -39.01294 -37.88783 -35.86293 -35.42455 -34.27783 -34.04237 -31.03454 -30.10161 -28.40492 -27.33793 -24.43131 -23.87106 -23.17631 -22.97718 -21.77251 -21.45235 -20.10821 -19.64249 -18.99184 -18.33865 -17.27331 -17.10122 -16.86097 -16.83207 -16.53854 -16.04254 -15.88509 -15.64002 -15.53068 -15.32799 -15.21080 -14.84941 -14.66310 -14.41454 -14.24105 -13.95644 -13.70857 -13.38497 -13.06304 -12.80539 -12.58496 -12.37930 -12.32000 -12.13326 -12.07083 -11.61708 -11.40038 -11.23061 -11.05148 -10.87075 -10.78500 -9.98959 -9.51212 -9.44666 -8.58786 -8.48396 -6.13532 0.29175 0.51492 1.38088 1.45025 1.53239 1.68093 2.16147 2.19490 2.76032 2.86286 3.10499 3.19371 3.29525 3.48463 3.51072 3.96922 3.97703 3.99457 4.12466 4.19894 4.29315 4.37843 4.41844 4.51487 4.60085 4.68895 4.83327 4.95029 5.01227 5.05344 5.06283 5.22817 5.27667 5.28728 5.34350 5.40278 5.62234 5.67447 5.95960 6.02743 6.16255 6.30080 6.58481 6.96396 7.05748 7.59000 7.69069 8.72335 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.003629 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.461677 B = 7713.529814 C = 9345.157752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.009 4.009 3 Si 1.011 2.989 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.097 0.903 9 O -0.205 6.205 10 C 0.123 3.877 11 C -0.261 4.261 12 C 0.111 3.889 13 F -0.147 7.147 14 C -0.199 4.199 15 C -0.069 4.069 16 C 0.093 3.907 17 N -0.668 5.668 18 C 0.715 3.285 19 O -0.605 6.605 20 N -0.712 5.712 21 C 0.195 3.805 22 H 0.077 0.923 23 C 0.056 3.944 24 N -0.860 5.860 25 C -0.170 4.170 26 C -0.181 4.181 27 C -0.154 4.154 28 H 0.274 0.726 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.411 0.589 33 H 0.404 0.596 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.341 0.659 37 H 0.346 0.654 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.450 -14.602 -1.061 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.115 0.885 9 O -0.110 6.110 10 C 0.069 3.931 11 C -0.282 4.282 12 C 0.091 3.909 13 F -0.126 7.126 14 C -0.218 4.218 15 C -0.090 4.090 16 C -0.003 4.003 17 N -0.313 5.313 18 C 0.417 3.583 19 O -0.486 6.486 20 N -0.365 5.365 21 C 0.089 3.911 22 H 0.095 0.905 23 C -0.076 4.076 24 N -0.391 5.391 25 C -0.190 4.190 26 C -0.218 4.218 27 C -0.192 4.192 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.181 0.819 32 H 0.247 0.753 33 H 0.239 0.761 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.287 -14.620 -0.943 16.832 hybrid contribution 0.111 0.984 -0.326 1.043 sum -8.177 -13.636 -1.269 15.950 Atomic orbital electron populations 1.70116 1.07494 1.28874 1.47750 1.26353 0.96833 1.02034 0.95616 0.84690 0.77922 0.75214 0.79113 1.19142 1.19357 1.18161 1.21714 0.92454 0.81211 1.53671 0.88534 1.83889 1.34633 1.11815 1.80701 1.19056 0.90152 0.87120 0.96738 1.20887 0.93588 0.98914 1.14844 1.17452 0.76507 0.94233 1.02679 1.91417 1.30395 1.97350 1.93400 1.20894 0.94881 0.96117 1.09949 1.21128 0.92636 0.97810 0.97449 1.16985 0.83224 0.90937 1.09195 1.42298 1.05207 1.16750 1.67091 1.15763 0.83088 0.81982 0.77495 1.90723 1.61467 1.40978 1.55427 1.44758 1.03508 1.19943 1.68274 1.20452 0.92973 0.85836 0.91819 0.90474 1.22171 0.93149 0.99545 0.92699 1.58539 1.09626 1.55249 1.15717 1.22422 0.99141 0.94061 1.03340 1.23074 1.02161 1.01161 0.95399 1.23021 0.99533 0.97605 0.99024 0.91681 0.84799 0.82657 0.81900 0.75347 0.76132 0.93028 0.90556 0.84672 0.84121 0.86425 0.89541 0.87836 0.86893 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 13.67 21.61 0.30 -51.15 16 2 C -0.01 -0.48 5.49 84.83 0.47 -0.01 16 3 Si 1.01 41.39 29.55 68.60 2.03 43.42 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -22.97 9.47 67.91 0.64 -22.33 16 8 H 0.10 5.06 5.23 -2.91 -0.02 5.04 16 9 O -0.20 -11.33 9.14 -22.84 -0.21 -11.53 16 10 C 0.12 5.94 6.67 22.69 0.15 6.09 16 11 C -0.26 -11.87 9.13 22.41 0.20 -11.66 16 12 C 0.11 4.46 7.29 22.37 0.16 4.63 16 13 F -0.15 -5.55 17.26 44.97 0.78 -4.77 16 14 C -0.20 -7.17 10.02 22.33 0.22 -6.94 16 15 C -0.07 -2.67 8.75 22.37 0.20 -2.47 16 16 C 0.09 3.99 6.49 38.22 0.25 4.23 16 17 N -0.67 -25.69 5.32 -316.69 -1.68 -27.37 16 18 C 0.72 24.48 8.00 179.06 1.43 25.91 16 19 O -0.61 -22.69 12.50 -3.99 -0.05 -22.74 16 20 N -0.71 -18.32 4.77 -457.83 -2.18 -20.50 16 21 C 0.19 4.04 2.64 44.99 0.12 4.16 16 22 H 0.08 1.91 6.96 -2.39 -0.02 1.89 16 23 C 0.06 1.06 6.30 86.30 0.54 1.61 16 24 N -0.86 -20.52 9.01 -186.72 -1.68 -22.20 16 25 C -0.17 -2.61 5.36 -10.80 -0.06 -2.67 16 26 C -0.18 -2.67 10.18 30.62 0.31 -2.36 16 27 C -0.15 -1.80 9.86 30.62 0.30 -1.50 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.13 6.17 5.65 -2.91 -0.02 6.16 16 30 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.16 6.04 5.59 -2.91 -0.02 6.02 16 32 H 0.41 15.91 8.31 -92.71 -0.77 15.13 16 33 H 0.40 9.21 8.77 -92.71 -0.81 8.39 16 34 H 0.05 0.78 7.73 -2.39 -0.02 0.76 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.34 8.87 8.68 -89.70 -0.78 8.09 16 37 H 0.35 6.92 9.08 -89.69 -0.81 6.11 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 1.09 7.91 -2.39 -0.02 1.07 16 Total: -1.00 -65.84 359.10 0.19 -65.65 By element: Atomic # 1 Polarization: 56.56 SS G_CDS: -2.05 Total: 54.51 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 4.95 Total: -3.31 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.25 Total: -121.22 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.26 Total: -34.28 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -65.84 0.19 -65.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.509 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds