Wall clock time and date at job start Tue Mar 31 2020 14:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48502 * 109.46759 * 269.99847 * 3 2 1 5 5 H 1.48495 * 109.47046 * 29.99525 * 3 2 1 6 6 H 1.48499 * 109.47032 * 149.99949 * 3 2 1 7 7 C 1.38633 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 359.97438 * 7 2 1 9 9 O 1.34808 * 120.00017 * 180.02562 * 7 2 1 10 10 C 1.35782 * 116.99851 * 174.95641 * 9 7 2 11 11 C 1.38732 * 120.08733 * 5.42818 * 10 9 7 12 12 C 1.38350 * 119.97535 * 180.02562 * 11 10 9 13 13 F 1.35101 * 119.92082 * 179.97438 * 12 11 10 14 14 C 1.38539 * 120.14967 * 0.02562 * 12 11 10 15 15 C 1.38195 * 120.17839 * 359.68008 * 14 12 11 16 16 C 1.38694 * 120.01915 * 0.59661 * 15 14 12 17 17 N 1.40138 * 120.07904 * 179.69890 * 16 15 14 18 18 C 1.34778 * 119.99632 * 34.59841 * 17 16 15 19 19 O 1.21591 * 120.00182 * 355.62618 * 18 17 16 20 20 N 1.34780 * 119.99839 * 175.62677 * 18 17 16 21 21 C 1.46501 * 119.99766 * 179.72447 * 20 18 17 22 22 H 1.08996 * 109.46903 * 325.27291 * 21 20 18 23 23 C 1.52996 * 109.46982 * 85.27748 * 21 20 18 24 24 N 1.46900 * 109.47349 * 304.99741 * 23 21 20 25 25 C 1.53001 * 109.46690 * 205.27630 * 21 20 18 26 26 C 1.53005 * 117.49533 * 128.75045 * 25 21 20 27 27 C 1.53000 * 117.50157 * 60.08998 * 25 21 20 28 28 H 0.96997 * 120.00326 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.01756 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.91274 * 179.97438 * 14 12 11 31 31 H 1.08004 * 119.99491 * 180.32206 * 15 14 12 32 32 H 0.96996 * 120.00016 * 214.60092 * 17 16 15 33 33 H 0.96999 * 119.99572 * 0.02562 * 20 18 17 34 34 H 1.09004 * 109.47119 * 65.00066 * 23 21 20 35 35 H 1.08997 * 109.46778 * 184.99708 * 23 21 20 36 36 H 1.00906 * 110.99563 * 56.04796 * 24 23 21 37 37 H 1.00900 * 110.99912 * 179.97438 * 24 23 21 38 38 H 1.08996 * 115.55343 * 274.41951 * 25 21 20 39 39 H 1.08996 * 117.49792 * 359.97438 * 26 25 21 40 40 H 1.09000 * 117.49787 * 145.02229 * 26 25 21 41 41 H 1.08995 * 117.50202 * 214.97708 * 27 25 21 42 42 H 1.09005 * 117.49850 * 359.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0014 9 8 3.3570 -1.2005 0.0011 10 6 3.9734 -2.4057 0.1079 11 6 3.2244 -3.5734 0.0970 12 6 3.8548 -4.8000 0.2065 13 9 3.1242 -5.9364 0.1962 14 6 5.2333 -4.8655 0.3278 15 6 5.9860 -3.7066 0.3334 16 6 5.3611 -2.4728 0.2297 17 7 6.1227 -1.2965 0.2416 18 6 7.3454 -1.2797 -0.3251 19 8 7.8208 -2.3041 -0.7758 20 7 8.0413 -0.1274 -0.3922 21 6 9.3729 -0.1104 -1.0027 22 1 9.8833 -1.0492 -0.7875 23 6 9.2375 0.0611 -2.5170 24 7 8.3611 -0.9892 -3.0524 25 6 10.1826 1.0536 -0.4279 26 6 11.5773 0.7421 0.1186 27 6 10.4317 1.0636 1.0816 28 1 -0.4850 0.8400 -0.0004 29 1 2.1495 -3.5249 0.0038 30 1 5.7214 -5.8251 0.4135 31 1 7.0610 -3.7614 0.4229 32 1 5.7699 -0.4944 0.6576 33 1 7.6622 0.6897 -0.0323 34 1 8.8079 1.0390 -2.7349 35 1 10.2210 -0.0150 -2.9806 36 1 7.4634 -0.9806 -2.5917 37 1 8.2553 -0.8973 -4.0516 38 1 10.0383 2.0152 -0.9205 39 1 11.9178 -0.2921 0.0690 40 1 12.3505 1.4989 -0.0141 41 1 10.4516 2.0317 1.5821 42 1 10.0184 0.2410 1.6654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841147173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:18 Heat of formation + Delta-G solvation = -37.433913 kcal Electronic energy + Delta-G solvation = -27529.747261 eV Core-core repulsion = 23426.436106 eV Total energy + Delta-G solvation = -4103.311155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.25776 -40.52542 -39.22959 -37.99147 -36.49652 -35.01548 -34.08503 -32.87897 -32.50613 -29.58896 -28.91204 -27.52943 -25.41789 -23.18816 -22.55790 -22.37642 -21.63412 -20.72380 -20.49282 -18.40226 -18.20460 -17.76956 -17.12043 -16.51061 -15.78013 -15.43228 -15.29243 -15.09403 -15.06210 -14.95110 -14.39117 -14.16747 -13.94837 -13.80612 -13.57285 -13.52402 -13.26007 -12.54921 -12.42268 -12.23380 -12.19050 -11.86462 -11.81693 -11.45618 -11.37841 -10.97562 -10.80647 -10.70135 -10.57206 -10.48652 -9.83911 -9.73235 -9.48233 -9.10522 -9.01633 -8.48233 -7.94323 -7.21719 -6.55166 -4.22375 1.78922 2.04896 2.70090 3.08306 3.11052 3.18438 3.38275 3.55634 4.06468 4.12964 4.27725 4.35656 4.55526 4.57776 4.72795 4.79615 4.93651 4.96205 5.01140 5.16062 5.25893 5.35357 5.49633 5.56047 5.60787 5.67599 5.71476 5.82746 5.94478 5.97221 6.11137 6.44237 6.55237 6.67059 6.83913 6.89535 7.03019 7.15658 7.23725 7.47405 7.51619 7.66716 7.87423 8.16618 8.77761 8.80884 9.34202 10.52258 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.004437 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.832538 B = 6308.370337 C = 8209.625193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.210 6.210 10 C 0.163 3.837 11 C -0.246 4.246 12 C 0.127 3.873 13 F -0.149 7.149 14 C -0.220 4.220 15 C -0.049 4.049 16 C 0.080 3.920 17 N -0.671 5.671 18 C 0.696 3.304 19 O -0.555 6.555 20 N -0.745 5.745 21 C 0.197 3.803 22 H 0.096 0.904 23 C 0.055 3.945 24 N -0.834 5.834 25 C -0.170 4.170 26 C -0.167 4.167 27 C -0.171 4.171 28 H 0.281 0.719 29 H 0.148 0.852 30 H 0.124 0.876 31 H 0.145 0.855 32 H 0.405 0.595 33 H 0.395 0.605 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.345 0.655 37 H 0.334 0.666 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.468 3.922 0.240 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.109 3.891 11 C -0.266 4.266 12 C 0.107 3.893 13 F -0.128 7.128 14 C -0.240 4.240 15 C -0.070 4.070 16 C -0.015 4.015 17 N -0.319 5.319 18 C 0.396 3.604 19 O -0.430 6.430 20 N -0.401 5.401 21 C 0.091 3.909 22 H 0.114 0.886 23 C -0.078 4.078 24 N -0.366 5.366 25 C -0.189 4.189 26 C -0.204 4.204 27 C -0.208 4.208 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.163 0.837 32 H 0.240 0.760 33 H 0.228 0.772 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.160 0.840 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.311 2.829 0.053 19.517 hybrid contribution -1.164 2.190 -0.032 2.481 sum 18.147 5.019 0.021 18.828 Atomic orbital electron populations 1.69642 1.05560 1.28649 1.47149 1.24464 0.95028 0.98750 0.95633 0.86161 0.80073 0.81574 0.78800 1.19959 1.20711 1.18634 1.20772 0.76516 0.96835 1.52475 0.87394 1.83521 1.22957 1.24801 1.80150 1.18541 0.89735 0.85785 0.95061 1.20963 1.02040 0.90112 1.13511 1.17471 0.89087 0.81292 1.01442 1.91425 1.77901 1.49450 1.94043 1.20561 0.91492 0.99105 1.12854 1.20682 1.00355 0.89184 0.96745 1.16642 0.86678 0.85995 1.12167 1.42266 1.16349 1.13487 1.59803 1.15958 0.80973 0.84278 0.79143 1.90970 1.69058 1.31039 1.51961 1.45213 1.19049 1.09996 1.65838 1.20375 0.81625 0.97893 0.90967 0.88563 1.22142 0.98180 0.92587 0.94867 1.58659 1.19701 1.49999 1.08258 1.22532 0.99287 0.99878 0.97232 1.22995 0.90931 1.02968 1.03540 1.22926 1.02712 1.03418 0.91742 0.90855 0.83428 0.85789 0.83738 0.75978 0.77205 0.95985 0.90448 0.83962 0.85443 0.87345 0.88366 0.88524 0.88629 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 13.96 55.48 0.77 -23.35 16 2 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 3 Si 0.91 19.92 28.62 -169.99 -4.86 15.05 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.33 9.95 30.88 0.31 -10.02 16 8 H 0.11 2.98 5.44 -52.49 -0.29 2.69 16 9 O -0.21 -5.00 8.15 0.01 0.00 -5.00 16 10 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 11 C -0.25 -5.29 9.14 -39.36 -0.36 -5.65 16 12 C 0.13 2.50 7.29 -39.43 -0.29 2.21 16 13 F -0.15 -2.87 17.26 2.25 0.04 -2.84 16 14 C -0.22 -3.95 10.02 -39.49 -0.40 -4.34 16 15 C -0.05 -0.89 8.70 -39.43 -0.34 -1.24 16 16 C 0.08 1.54 6.33 -83.43 -0.53 1.01 16 17 N -0.67 -11.02 5.20 -14.07 -0.07 -11.09 16 18 C 0.70 10.68 6.73 -86.91 -0.58 10.09 16 19 O -0.56 -10.01 11.84 5.29 0.06 -9.95 16 20 N -0.74 -8.61 4.76 -58.68 -0.28 -8.89 16 21 C 0.20 2.06 2.63 -67.93 -0.18 1.88 16 22 H 0.10 1.22 7.33 -51.93 -0.38 0.84 16 23 C 0.05 0.58 6.51 -3.83 -0.02 0.56 16 24 N -0.83 -11.09 8.58 -10.37 -0.09 -11.18 16 25 C -0.17 -1.32 5.22 -90.62 -0.47 -1.79 16 26 C -0.17 -1.16 10.18 -26.69 -0.27 -1.44 16 27 C -0.17 -1.28 10.13 -26.69 -0.27 -1.55 16 28 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.15 3.34 5.64 -52.49 -0.30 3.05 16 30 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.15 2.57 6.19 -52.48 -0.32 2.24 16 32 H 0.41 6.19 8.59 -40.82 -0.35 5.84 16 33 H 0.39 3.86 8.62 -40.82 -0.35 3.51 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.35 5.30 6.22 -39.29 -0.24 5.05 16 37 H 0.33 3.85 9.08 -39.29 -0.36 3.49 16 38 H 0.11 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -29.04 355.00 -7.95 -36.98 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -5.10 Total: 20.27 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.77 Total: -5.36 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.33 Total: -54.51 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.06 Total: -14.94 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.86 Total: 15.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.04 -7.95 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841147173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.451 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds