Wall clock time and date at job start Tue Mar 31 2020 14:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47388 * 269.99887 * 3 2 1 5 5 H 1.48504 * 109.47241 * 30.00452 * 3 2 1 6 6 H 1.48505 * 109.46817 * 150.00098 * 3 2 1 7 7 C 1.40019 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 179.97438 * 7 2 1 9 9 C 1.41328 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.79279 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.13023 * 179.97438 * 10 9 7 12 12 C 1.38690 * 118.67406 * 359.75178 * 11 10 9 13 13 C 1.39643 * 119.49105 * 0.51436 * 12 11 10 14 14 N 1.39253 * 119.56959 * 179.75019 * 13 12 11 15 15 C 1.34773 * 120.00513 * 337.58613 * 14 13 12 16 16 O 1.21582 * 119.99382 * 6.69242 * 15 14 13 17 17 N 1.34774 * 120.00467 * 186.69845 * 15 14 13 18 18 C 1.47148 * 120.98335 * 185.77728 * 17 15 14 19 19 C 1.53298 * 108.38548 * 129.44058 * 18 17 15 20 20 O 1.42966 * 109.22162 * 52.30178 * 19 18 17 21 21 C 1.42962 * 114.16391 * 297.42040 * 20 19 18 22 22 H 1.08992 * 109.51474 * 302.65488 * 21 20 19 23 23 C 1.53005 * 109.50924 * 182.55290 * 21 20 19 24 24 C 1.53002 * 109.46760 * 65.00421 * 23 21 20 25 25 F 1.39907 * 109.46987 * 179.97438 * 24 23 21 26 26 C 1.47153 * 120.97981 * 5.49587 * 17 15 14 27 27 N 1.31927 * 120.85306 * 359.47083 * 13 12 11 28 28 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.43062 * 359.97212 * 10 9 7 30 30 H 1.08003 * 120.66003 * 179.97438 * 11 10 9 31 31 H 1.07998 * 120.25139 * 180.26319 * 12 11 10 32 32 H 0.97008 * 119.99695 * 157.58575 * 14 13 12 33 33 H 1.09006 * 109.68240 * 249.16399 * 18 17 15 34 34 H 1.09001 * 109.68326 * 9.71713 * 18 17 15 35 35 H 1.08997 * 109.51172 * 172.22125 * 19 18 17 36 36 H 1.08999 * 109.51203 * 292.33027 * 19 18 17 37 37 H 1.09000 * 109.47181 * 184.99876 * 23 21 20 38 38 H 1.08991 * 109.47614 * 305.00043 * 23 21 20 39 39 H 1.09005 * 109.47104 * 299.99313 * 24 23 21 40 40 H 1.09000 * 109.47619 * 59.99988 * 24 23 21 41 41 H 1.09003 * 109.68091 * 350.28022 * 26 17 15 42 42 H 1.09000 * 109.68196 * 110.83313 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7001 7 6 2.0075 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0016 10 6 2.0085 -3.6517 -0.0027 11 6 1.3032 -4.8415 -0.0032 12 6 -0.0829 -4.7934 0.0026 13 6 -0.7278 -3.5548 -0.0021 14 7 -2.1195 -3.5047 -0.0015 15 6 -2.8321 -4.5605 -0.4418 16 8 -2.2675 -5.5995 -0.7246 17 7 -4.1704 -4.4645 -0.5689 18 6 -4.9835 -5.6378 -0.9259 19 6 -6.1356 -5.7516 0.0790 20 8 -6.8234 -4.5003 0.1501 21 6 -6.0197 -3.4167 0.6230 22 1 -5.6215 -3.6613 1.6076 23 6 -6.8733 -2.1504 0.7170 24 6 -7.9569 -2.3437 1.7797 25 9 -8.7372 -1.1857 1.8662 26 6 -4.8623 -3.1846 -0.3486 27 7 -0.0358 -2.4317 -0.0015 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6559 -0.0032 30 1 1.8215 -5.7890 -0.0045 31 1 -0.6590 -5.7069 0.0066 32 1 -2.5760 -2.7098 0.3158 33 1 -5.3847 -5.5142 -1.9318 34 1 -4.3690 -6.5371 -0.8832 35 1 -6.8268 -6.5290 -0.2462 36 1 -5.7379 -6.0056 1.0616 37 1 -6.2415 -1.3059 0.9919 38 1 -7.3413 -1.9552 -0.2478 39 1 -8.5889 -3.1883 1.5049 40 1 -7.4889 -2.5389 2.7446 41 1 -4.1676 -2.4601 0.0762 42 1 -5.2510 -2.8097 -1.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:06 Heat of formation + Delta-G solvation = -68.145907 kcal Electronic energy + Delta-G solvation = -27322.148930 eV Core-core repulsion = 23217.506003 eV Total energy + Delta-G solvation = -4104.642927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.80137 -40.69710 -39.12370 -37.74459 -34.82544 -34.59879 -33.92061 -33.21516 -30.46699 -30.10289 -29.11518 -27.59766 -25.47437 -24.38277 -23.32537 -21.79218 -21.59117 -21.13698 -19.51267 -18.32131 -17.52006 -17.19739 -16.53309 -16.40732 -15.95553 -15.63486 -15.45421 -15.34604 -15.00775 -14.75002 -14.47453 -14.27978 -14.04042 -13.79005 -13.40950 -12.92050 -12.90150 -12.60831 -12.25867 -12.06363 -11.91616 -11.62001 -11.39308 -11.26873 -11.16755 -11.03501 -10.96170 -10.77857 -10.67376 -10.33433 -10.12973 -9.89567 -9.28722 -9.08261 -8.61796 -8.04999 -7.70261 -7.12645 -6.43643 -4.52527 2.54407 2.69267 2.92637 3.07134 3.10345 3.23155 3.34684 3.55538 3.92801 3.94445 4.17086 4.46286 4.55435 4.68072 4.75881 4.76375 4.83792 4.88546 5.01289 5.05574 5.22868 5.37643 5.39502 5.55028 5.60225 5.71674 5.81326 5.88216 6.11997 6.27939 6.39426 6.68905 6.78870 6.79634 6.92617 6.97554 7.15546 7.47499 7.56596 7.87984 8.00292 8.13103 8.34567 8.67475 8.82342 8.97880 10.02384 10.29000 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.003540 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.291205 B = 7907.638038 C = 9988.421911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.289 4.289 11 C -0.051 4.051 12 C -0.313 4.313 13 C 0.369 3.631 14 N -0.657 5.657 15 C 0.713 3.287 16 O -0.565 6.565 17 N -0.635 5.635 18 C 0.097 3.903 19 C 0.049 3.951 20 O -0.377 6.377 21 C 0.080 3.920 22 H 0.069 0.931 23 C -0.145 4.145 24 C 0.065 3.935 25 F -0.220 7.220 26 C 0.082 3.918 27 N -0.508 5.508 28 H 0.270 0.730 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.171 -4.330 1.909 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.103 0.897 9 C 0.153 3.847 10 C -0.311 4.311 11 C -0.075 4.075 12 C -0.338 4.338 13 C 0.134 3.866 14 N -0.306 5.306 15 C 0.415 3.585 16 O -0.441 6.441 17 N -0.374 5.374 18 C -0.027 4.027 19 C -0.029 4.029 20 O -0.296 6.296 21 C 0.022 3.978 22 H 0.087 0.913 23 C -0.183 4.183 24 C 0.010 3.990 25 F -0.201 7.201 26 C -0.042 4.042 27 N -0.227 5.227 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.239 0.761 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.581 -4.094 1.631 16.192 hybrid contribution 0.858 0.482 0.111 0.991 sum -14.722 -3.612 1.742 15.259 Atomic orbital electron populations 1.70119 1.07228 1.27437 1.29872 1.26024 0.94879 1.00975 0.93354 0.86342 0.80506 0.80844 0.79191 1.19476 1.20205 1.18549 1.19558 0.94236 0.89202 1.43749 0.89682 1.18166 0.86302 0.92116 0.88109 1.21726 0.98785 0.93512 1.17127 1.20837 0.93739 0.96618 0.96345 1.21825 0.94596 0.97933 1.19460 1.18231 0.81828 0.91124 0.95426 1.42388 1.05616 1.17679 1.64910 1.15646 0.80580 0.84043 0.78275 1.90797 1.67631 1.29162 1.56530 1.47286 1.04799 1.10359 1.74971 1.22128 0.92418 0.89712 0.98427 1.23043 0.94671 0.86135 0.99036 1.87935 1.37493 1.17163 1.87019 1.22293 0.90965 0.87587 0.97000 0.91283 1.22164 0.98087 0.96777 1.01277 1.21930 0.92313 0.84765 0.99997 1.92769 1.76989 1.52737 1.97647 1.22241 0.94943 0.86446 1.00547 1.68005 1.08216 1.24628 1.21827 0.91905 0.88231 0.88334 0.84418 0.76134 0.90862 0.87778 0.87436 0.92471 0.88675 0.89400 0.89964 0.90860 0.88874 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.57 11.46 55.55 0.64 -17.94 16 2 C 0.07 1.80 5.50 -17.35 -0.10 1.70 16 3 Si 0.91 18.29 29.56 -169.99 -5.02 13.27 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.44 -11.55 9.14 -37.74 -0.34 -11.90 16 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.28 7.68 6.55 -85.00 -0.56 7.12 16 10 C -0.29 -7.26 9.83 -38.66 -0.38 -7.64 16 11 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 12 C -0.31 -7.70 8.91 -38.89 -0.35 -8.05 16 13 C 0.37 9.15 7.50 -154.98 -1.16 7.99 16 14 N -0.66 -13.33 5.30 -15.79 -0.08 -13.41 16 15 C 0.71 13.32 8.21 -86.92 -0.71 12.61 16 16 O -0.56 -12.21 12.52 5.29 0.07 -12.14 16 17 N -0.63 -8.80 3.03 -178.26 -0.54 -9.34 16 18 C 0.10 1.08 6.62 -3.53 -0.02 1.05 16 19 C 0.05 0.42 6.99 37.31 0.26 0.68 16 20 O -0.38 -3.63 9.92 -35.23 -0.35 -3.98 16 21 C 0.08 0.74 2.76 -26.79 -0.07 0.66 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.14 -1.15 5.38 -26.73 -0.14 -1.29 16 24 C 0.06 0.52 7.45 37.16 0.28 0.79 16 25 F -0.22 -2.34 17.36 2.25 0.04 -2.30 16 26 C 0.08 0.91 5.91 -3.75 -0.02 0.89 16 27 N -0.51 -13.80 7.89 -10.26 -0.08 -13.88 16 28 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 29 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.14 3.36 5.18 -52.85 -0.27 3.09 16 32 H 0.40 7.28 6.38 -40.82 -0.26 7.02 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.26 7.13 -51.93 -0.37 0.89 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.05 5.66 -51.93 -0.29 0.76 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -32.13 348.80 -9.18 -41.31 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.38 Total: 10.12 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.73 Total: 3.03 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.07 Total: -54.56 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.28 Total: -16.12 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.13 -9.18 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.833 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds