Wall clock time and date at job start Tue Mar 31 2020 14:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47388 * 269.99887 * 3 2 1 5 5 H 1.48504 * 109.47241 * 30.00452 * 3 2 1 6 6 H 1.48505 * 109.46817 * 150.00098 * 3 2 1 7 7 C 1.40019 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 179.97438 * 7 2 1 9 9 C 1.41328 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.79279 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.13023 * 179.97438 * 10 9 7 12 12 C 1.38690 * 118.67406 * 359.75178 * 11 10 9 13 13 C 1.39643 * 119.49105 * 0.51436 * 12 11 10 14 14 N 1.39253 * 119.56959 * 179.75019 * 13 12 11 15 15 C 1.34773 * 120.00513 * 337.58613 * 14 13 12 16 16 O 1.21582 * 119.99382 * 6.69242 * 15 14 13 17 17 N 1.34774 * 120.00467 * 186.69845 * 15 14 13 18 18 C 1.47148 * 120.98335 * 185.77728 * 17 15 14 19 19 C 1.53298 * 108.38548 * 129.44058 * 18 17 15 20 20 O 1.42966 * 109.22162 * 52.30178 * 19 18 17 21 21 C 1.42962 * 114.16391 * 297.42040 * 20 19 18 22 22 H 1.08992 * 109.51474 * 302.65488 * 21 20 19 23 23 C 1.53005 * 109.50924 * 182.55290 * 21 20 19 24 24 C 1.53002 * 109.46760 * 65.00421 * 23 21 20 25 25 F 1.39907 * 109.46987 * 179.97438 * 24 23 21 26 26 C 1.47153 * 120.97981 * 5.49587 * 17 15 14 27 27 N 1.31927 * 120.85306 * 359.47083 * 13 12 11 28 28 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.43062 * 359.97212 * 10 9 7 30 30 H 1.08003 * 120.66003 * 179.97438 * 11 10 9 31 31 H 1.07998 * 120.25139 * 180.26319 * 12 11 10 32 32 H 0.97008 * 119.99695 * 157.58575 * 14 13 12 33 33 H 1.09006 * 109.68240 * 249.16399 * 18 17 15 34 34 H 1.09001 * 109.68326 * 9.71713 * 18 17 15 35 35 H 1.08997 * 109.51172 * 172.22125 * 19 18 17 36 36 H 1.08999 * 109.51203 * 292.33027 * 19 18 17 37 37 H 1.09000 * 109.47181 * 184.99876 * 23 21 20 38 38 H 1.08991 * 109.47614 * 305.00043 * 23 21 20 39 39 H 1.09005 * 109.47104 * 299.99313 * 24 23 21 40 40 H 1.09000 * 109.47619 * 59.99988 * 24 23 21 41 41 H 1.09003 * 109.68091 * 350.28022 * 26 17 15 42 42 H 1.09000 * 109.68196 * 110.83313 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7001 7 6 2.0075 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0016 10 6 2.0085 -3.6517 -0.0027 11 6 1.3032 -4.8415 -0.0032 12 6 -0.0829 -4.7934 0.0026 13 6 -0.7278 -3.5548 -0.0021 14 7 -2.1195 -3.5047 -0.0015 15 6 -2.8321 -4.5605 -0.4418 16 8 -2.2675 -5.5995 -0.7246 17 7 -4.1704 -4.4645 -0.5689 18 6 -4.9835 -5.6378 -0.9259 19 6 -6.1356 -5.7516 0.0790 20 8 -6.8234 -4.5003 0.1501 21 6 -6.0197 -3.4167 0.6230 22 1 -5.6215 -3.6613 1.6076 23 6 -6.8733 -2.1504 0.7170 24 6 -7.9569 -2.3437 1.7797 25 9 -8.7372 -1.1857 1.8662 26 6 -4.8623 -3.1846 -0.3486 27 7 -0.0358 -2.4317 -0.0015 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6559 -0.0032 30 1 1.8215 -5.7890 -0.0045 31 1 -0.6590 -5.7069 0.0066 32 1 -2.5760 -2.7098 0.3158 33 1 -5.3847 -5.5142 -1.9318 34 1 -4.3690 -6.5371 -0.8832 35 1 -6.8268 -6.5290 -0.2462 36 1 -5.7379 -6.0056 1.0616 37 1 -6.2415 -1.3059 0.9919 38 1 -7.3413 -1.9552 -0.2478 39 1 -8.5889 -3.1883 1.5049 40 1 -7.4889 -2.5389 2.7446 41 1 -4.1676 -2.4601 0.0762 42 1 -5.2510 -2.8097 -1.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:05 Heat of formation + Delta-G solvation = -87.621697 kcal Electronic energy + Delta-G solvation = -27322.993464 eV Core-core repulsion = 23217.506003 eV Total energy + Delta-G solvation = -4105.487461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.53885 -42.01010 -40.39225 -39.36456 -36.17401 -36.01528 -35.12519 -34.66636 -32.33954 -31.36832 -30.50444 -28.68141 -27.34108 -25.23189 -24.48825 -23.50840 -22.93482 -22.24393 -20.94316 -19.68002 -19.30196 -18.21793 -17.81772 -17.40767 -16.96880 -16.75498 -16.55088 -16.38547 -16.34164 -16.19251 -15.92446 -15.49885 -15.31855 -14.94849 -14.77933 -14.62315 -14.05961 -13.84413 -13.65158 -13.44196 -13.01547 -12.89762 -12.76883 -12.65817 -12.58473 -12.35398 -12.10076 -11.84766 -11.73043 -11.64482 -11.52655 -11.21791 -11.06946 -10.77076 -9.99609 -9.74658 -9.62775 -8.97111 -8.30653 -6.50789 0.80039 1.11387 1.31850 1.43395 1.54221 1.57411 2.00355 2.24615 2.62061 2.63824 2.87751 3.34345 3.72413 3.86140 3.90348 3.91509 4.00489 4.05618 4.15468 4.26516 4.31898 4.33357 4.39963 4.60188 4.63511 4.67230 4.80881 4.85555 4.86527 4.91576 4.93426 5.00211 5.17160 5.23142 5.32580 5.55118 5.66437 5.73484 5.97871 6.04976 6.15448 6.27482 6.67087 6.79674 6.96976 7.37339 8.09098 8.45024 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.003540 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.291205 B = 7907.638038 C = 9988.421911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.246 3.754 10 C -0.308 4.308 11 C -0.049 4.049 12 C -0.328 4.328 13 C 0.361 3.639 14 N -0.655 5.655 15 C 0.709 3.291 16 O -0.598 6.598 17 N -0.625 5.625 18 C 0.090 3.910 19 C 0.055 3.945 20 O -0.379 6.379 21 C 0.089 3.911 22 H 0.072 0.928 23 C -0.140 4.140 24 C 0.063 3.937 25 F -0.236 7.236 26 C 0.077 3.923 27 N -0.533 5.533 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.409 0.591 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 -3.781 2.077 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.109 0.891 9 C 0.119 3.881 10 C -0.330 4.330 11 C -0.074 4.074 12 C -0.353 4.353 13 C 0.125 3.875 14 N -0.305 5.305 15 C 0.411 3.589 16 O -0.477 6.477 17 N -0.363 5.363 18 C -0.032 4.032 19 C -0.022 4.022 20 O -0.298 6.298 21 C 0.030 3.970 22 H 0.090 0.910 23 C -0.178 4.178 24 C 0.008 3.992 25 F -0.217 7.217 26 C -0.046 4.046 27 N -0.253 5.253 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.248 0.752 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.700 -3.560 1.802 17.171 hybrid contribution 1.083 0.233 0.027 1.109 sum -15.617 -3.327 1.829 16.072 Atomic orbital electron populations 1.70188 1.08756 1.29032 1.29543 1.26925 0.95788 1.04295 0.92396 0.85137 0.79065 0.75759 0.79294 1.19032 1.19114 1.18026 1.19942 0.94834 0.90112 1.44844 0.89055 1.18680 0.87060 0.93459 0.88861 1.21908 0.99594 0.93451 1.18095 1.21197 0.93659 0.97629 0.94871 1.22036 0.95213 0.98035 1.19991 1.18553 0.83568 0.90871 0.94520 1.42295 1.04233 1.18656 1.65303 1.15796 0.81990 0.83049 0.78047 1.90750 1.68904 1.30152 1.57891 1.47350 1.03227 1.12317 1.73411 1.22406 0.92600 0.88158 1.00036 1.23116 0.94236 0.86540 0.98280 1.87950 1.37501 1.17397 1.86919 1.22223 0.90307 0.88147 0.96330 0.90980 1.22117 0.97993 0.96214 1.01472 1.22047 0.92230 0.84211 1.00678 1.92739 1.77463 1.53760 1.97728 1.22463 0.95324 0.85040 1.01747 1.68035 1.08478 1.25607 1.23155 0.91006 0.86837 0.85168 0.84243 0.75180 0.89667 0.88901 0.84377 0.92467 0.88190 0.89319 0.89260 0.89534 0.89307 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.88 11.46 21.84 0.25 -38.63 16 2 C 0.03 1.39 5.50 85.29 0.47 1.86 16 3 Si 0.99 37.13 29.56 68.60 2.03 39.16 16 4 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.47 -25.08 9.14 23.46 0.21 -24.87 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.25 13.82 6.55 40.20 0.26 14.08 16 10 C -0.31 -15.71 9.83 22.87 0.22 -15.48 16 11 C -0.05 -2.34 10.15 22.39 0.23 -2.11 16 12 C -0.33 -16.38 8.91 22.72 0.20 -16.18 16 13 C 0.36 18.32 7.50 133.24 1.00 19.32 16 14 N -0.66 -27.03 5.30 -322.13 -1.71 -28.73 16 15 C 0.71 26.67 8.21 179.06 1.47 28.14 16 16 O -0.60 -26.20 12.52 -3.98 -0.05 -26.25 16 17 N -0.63 -16.85 3.03 -836.15 -2.53 -19.38 16 18 C 0.09 1.89 6.62 86.36 0.57 2.46 16 19 C 0.06 0.83 6.99 72.08 0.50 1.33 16 20 O -0.38 -6.29 9.92 -148.98 -1.48 -7.77 16 21 C 0.09 1.45 2.76 30.56 0.08 1.54 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 C -0.14 -1.96 5.38 30.60 0.16 -1.79 16 24 C 0.06 0.88 7.45 71.98 0.54 1.41 16 25 F -0.24 -4.67 17.36 44.97 0.78 -3.88 16 26 C 0.08 1.62 5.91 86.21 0.51 2.13 16 27 N -0.53 -29.69 7.89 -186.37 -1.47 -31.16 16 28 H 0.28 12.88 8.29 -92.71 -0.77 12.11 16 29 H 0.11 5.28 8.06 -2.91 -0.02 5.25 16 30 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 31 H 0.14 6.91 5.18 -8.59 -0.04 6.87 16 32 H 0.41 15.09 6.38 -92.70 -0.59 14.50 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.09 2.19 7.13 -2.39 -0.02 2.18 16 35 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.13 7.83 -2.38 -0.02 1.11 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.95 5.66 -2.39 -0.01 1.94 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.20 348.80 2.70 -67.49 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.44 Total: 37.31 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.44 Total: 11.85 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.46 Total: -117.90 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.53 Total: -34.02 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.88 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -70.20 2.70 -67.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.129 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds