Wall clock time and date at job start Tue Mar 31 2020 14:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48502 * 109.46709 * 240.00301 * 3 2 1 5 5 H 1.48496 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46954 * 120.00344 * 3 2 1 7 7 C 1.40222 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00031 * 190.19243 * 7 2 1 9 9 C 1.41111 * 120.00388 * 10.18722 * 7 2 1 10 10 C 1.40886 * 120.10835 * 209.61014 * 9 7 2 11 11 C 1.36312 * 119.89215 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10758 * 359.97438 * 11 10 9 13 13 C 1.47647 * 119.89686 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99603 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99999 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99848 * 184.89364 * 15 13 12 17 17 C 1.50705 * 112.84730 * 64.54263 * 16 15 13 18 18 N 1.31795 * 119.12323 * 44.05241 * 17 16 15 19 19 C 1.32335 * 120.81990 * 180.02562 * 18 17 16 20 20 C 1.38599 * 119.10066 * 359.97438 * 19 18 17 21 21 C 1.38599 * 118.40293 * 359.97438 * 20 19 18 22 22 N 1.31799 * 119.12436 * 224.04726 * 17 16 15 23 23 C 1.53779 * 113.69018 * 195.81013 * 16 15 13 24 24 C 1.53780 * 87.07917 * 89.12823 * 23 16 15 25 25 C 1.53775 * 113.61715 * 293.35027 * 16 15 13 26 26 C 1.40008 * 120.20980 * 0.25831 * 12 11 10 27 27 C 1.36323 * 120.10616 * 359.47699 * 26 12 11 28 28 H 0.96996 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.05169 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94571 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99690 * 4.89694 * 15 13 12 32 32 H 1.08000 * 120.44490 * 180.02562 * 19 18 17 33 33 H 1.08006 * 120.79686 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.44475 * 179.97438 * 21 20 19 35 35 H 1.08996 * 113.61295 * 203.67859 * 23 16 15 36 36 H 1.09002 * 113.61360 * 334.58008 * 23 16 15 37 37 H 1.08998 * 113.61814 * 270.88080 * 24 23 16 38 38 H 1.09004 * 113.61121 * 139.98293 * 24 23 16 39 39 H 1.09001 * 113.61406 * 25.34604 * 25 16 15 40 40 H 1.08998 * 113.61574 * 156.24940 * 25 16 15 41 41 H 1.08000 * 119.94767 * 179.74447 * 26 12 11 42 42 H 1.08002 * 120.05382 * 180.23217 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6964 -1.2126 5 1 1.2754 2.7464 -0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0076 -1.2143 -0.0005 8 1 3.0749 -1.2218 0.1650 9 6 1.3188 -2.4267 -0.2172 10 6 1.7921 -3.6214 0.3604 11 6 1.1236 -4.7902 0.1478 12 6 -0.0319 -4.8046 -0.6428 13 6 -0.7520 -6.0733 -0.8705 14 8 -0.3416 -7.1032 -0.3714 15 7 -1.8642 -6.0896 -1.6315 16 6 -2.6387 -7.3254 -1.7702 17 6 -3.2494 -7.7822 -0.4704 18 7 -3.8329 -6.8955 0.3108 19 6 -4.3795 -7.2597 1.4597 20 6 -4.3325 -8.5928 1.8359 21 6 -3.7113 -9.4957 0.9876 22 7 -3.1859 -9.0579 -0.1452 23 6 -3.6324 -7.3033 -2.9436 24 6 -2.4933 -7.8566 -3.8160 25 6 -1.8930 -8.4383 -2.5252 26 6 -0.5034 -3.6208 -1.2229 27 6 0.1554 -2.4461 -1.0115 28 1 -0.4850 0.8400 0.0004 29 1 2.6831 -3.6112 0.9706 30 1 1.4859 -5.7065 0.5898 31 1 -2.1518 -5.2832 -2.0874 32 1 -4.8564 -6.5280 2.0950 33 1 -4.7695 -8.9200 2.7679 34 1 -3.6555 -10.5423 1.2484 35 1 -4.4657 -7.9955 -2.8231 36 1 -3.9515 -6.3003 -3.2268 37 1 -1.8778 -7.0820 -4.2734 38 1 -2.8177 -8.6160 -4.5276 39 1 -0.8078 -8.3515 -2.4706 40 1 -2.2508 -9.4407 -2.2902 41 1 -1.3928 -3.6375 -1.8353 42 1 -0.2112 -1.5328 -1.4564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881999632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:29 Heat of formation + Delta-G solvation = 56.209480 kcal Electronic energy + Delta-G solvation = -26445.945353 eV Core-core repulsion = 22777.464105 eV Total energy + Delta-G solvation = -3668.481248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26090 -39.56394 -38.01326 -36.74150 -33.80567 -33.67347 -32.72815 -31.98395 -29.99798 -29.42898 -26.53895 -25.82116 -25.49228 -24.31905 -22.86319 -21.90687 -20.94695 -19.84019 -19.06668 -17.52733 -17.39639 -17.24971 -16.82121 -15.77153 -15.41827 -15.31497 -14.76816 -14.61962 -14.24871 -13.98901 -13.65466 -13.58570 -13.49059 -13.14924 -12.70967 -12.35210 -12.13113 -11.93694 -11.84311 -11.40682 -11.24127 -11.21009 -10.97017 -10.90534 -10.74068 -10.67089 -10.54077 -10.42237 -10.00332 -9.54572 -9.51217 -9.39412 -9.12132 -8.87403 -8.63930 -7.70057 -7.46788 -6.94011 -4.59382 0.91978 1.16704 2.24072 2.95850 2.96675 2.99582 3.04240 3.49585 3.77035 3.80495 3.82640 4.03232 4.26807 4.57499 4.59949 4.63250 4.72117 4.97001 4.98932 5.09168 5.11494 5.44374 5.57927 5.62634 5.74570 5.80281 5.85699 6.01834 6.07357 6.12623 6.29974 6.32190 6.37730 6.41908 6.78524 6.87117 6.97396 7.07074 7.08100 7.15350 7.46699 7.65566 7.80639 7.88110 8.10360 8.19358 8.25791 8.43342 8.66512 8.77114 9.09196 9.97840 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.003064 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.964471 B = 9135.470752 C = 9535.001373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.130 3.870 10 C -0.234 4.234 11 C -0.026 4.026 12 C -0.274 4.274 13 C 0.576 3.424 14 O -0.566 6.566 15 N -0.708 5.708 16 C 0.220 3.780 17 C 0.336 3.664 18 N -0.502 5.502 19 C 0.147 3.853 20 C -0.239 4.239 21 C 0.145 3.855 22 N -0.504 5.504 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.064 4.064 27 C -0.170 4.170 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.402 0.598 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -10.632 -2.652 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.127 3.873 10 C -0.254 4.254 11 C -0.045 4.045 12 C -0.279 4.279 13 C 0.371 3.629 14 O -0.446 6.446 15 N -0.361 5.361 16 C 0.130 3.870 17 C 0.067 3.933 18 N -0.215 5.215 19 C -0.020 4.020 20 C -0.261 4.261 21 C -0.021 4.021 22 N -0.217 5.217 23 C -0.163 4.163 24 C -0.177 4.177 25 C -0.161 4.161 26 C -0.083 4.083 27 C -0.189 4.189 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.239 0.761 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.747 -10.865 -3.127 14.927 hybrid contribution -0.347 0.969 1.099 1.506 sum -10.094 -9.895 -2.028 14.280 Atomic orbital electron populations 1.69702 1.07705 1.29869 1.33384 1.26053 0.94911 1.01669 0.92087 0.86226 0.80041 0.79538 0.80196 1.18601 1.20104 1.18770 1.19780 0.96158 0.90480 1.41202 0.89923 1.17798 0.90845 0.92095 0.86577 1.20764 1.03727 0.93394 1.07498 1.20353 0.92886 0.96829 0.94433 1.18912 1.02823 0.91572 1.14591 1.18592 0.78776 0.89324 0.76196 1.90652 1.67652 1.34904 1.51428 1.45466 1.26721 1.11129 1.52819 1.19612 0.92800 0.87832 0.86802 1.23196 0.89943 0.84942 0.95177 1.68242 1.09511 1.38672 1.05086 1.23262 0.91916 0.94661 0.92150 1.22866 1.04215 0.96150 1.02845 1.23188 0.89638 1.00521 0.88784 1.68095 1.17406 1.17681 1.18522 1.23153 0.96818 1.02485 0.93883 1.22872 0.97282 1.00791 0.96766 1.23173 1.01480 0.98193 0.93221 1.20506 0.97298 0.92803 0.97671 1.21026 0.99077 0.96582 1.02250 0.90339 0.88394 0.88257 0.76114 0.81731 0.83805 0.81719 0.89195 0.90194 0.89673 0.90918 0.90142 0.88104 0.89220 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.07 10.85 55.56 0.60 -18.47 16 2 C 0.07 1.72 5.26 -17.31 -0.09 1.63 16 3 Si 0.92 17.60 29.57 -169.99 -5.03 12.57 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.45 -11.29 9.05 -37.75 -0.34 -11.63 16 8 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 9 C 0.13 3.35 5.55 -106.80 -0.59 2.76 16 10 C -0.23 -5.77 9.73 -39.27 -0.38 -6.15 16 11 C -0.03 -0.62 9.52 -39.61 -0.38 -1.00 16 12 C -0.27 -6.40 5.89 -104.73 -0.62 -7.01 16 13 C 0.58 12.56 7.31 -12.42 -0.09 12.47 16 14 O -0.57 -13.71 14.93 5.29 0.08 -13.63 16 15 N -0.71 -12.51 4.99 -48.92 -0.24 -12.76 16 16 C 0.22 3.44 0.94 -132.16 -0.12 3.32 16 17 C 0.34 5.62 6.10 -157.19 -0.96 4.67 16 18 N -0.50 -8.38 10.21 -10.72 -0.11 -8.49 16 19 C 0.15 1.93 11.31 -17.20 -0.19 1.73 16 20 C -0.24 -2.60 10.17 -39.32 -0.40 -3.00 16 21 C 0.15 1.76 11.30 -17.21 -0.19 1.56 16 22 N -0.50 -7.80 8.92 -10.72 -0.10 -7.89 16 23 C -0.12 -1.47 7.36 -25.92 -0.19 -1.67 16 24 C -0.14 -1.59 7.99 -25.92 -0.21 -1.79 16 25 C -0.12 -1.78 6.73 -25.92 -0.17 -1.96 16 26 C -0.06 -1.43 9.47 -39.61 -0.38 -1.81 16 27 C -0.17 -4.21 8.59 -39.27 -0.34 -4.55 16 28 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 31 H 0.40 6.40 6.67 -40.82 -0.27 6.13 16 32 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.38 7.32 -51.93 -0.38 1.00 16 40 H 0.10 1.42 7.21 -51.93 -0.37 1.05 16 41 H 0.09 1.72 6.38 -52.49 -0.34 1.39 16 42 H 0.12 3.06 6.25 -52.49 -0.33 2.73 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -31.42 355.38 -10.10 -41.52 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.01 Total: 14.22 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -5.65 Total: -12.43 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.15 Total: -47.60 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.42 -10.10 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881999632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.727 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds