Wall clock time and date at job start Tue Mar 31 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48502 * 109.46709 * 240.00301 * 3 2 1 5 5 H 1.48496 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46954 * 120.00344 * 3 2 1 7 7 C 1.40222 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00031 * 190.19243 * 7 2 1 9 9 C 1.41111 * 120.00388 * 10.18722 * 7 2 1 10 10 C 1.40886 * 120.10835 * 209.61014 * 9 7 2 11 11 C 1.36312 * 119.89215 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10758 * 359.97438 * 11 10 9 13 13 C 1.47647 * 119.89686 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99603 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99999 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99848 * 184.89364 * 15 13 12 17 17 C 1.50705 * 112.84730 * 64.54263 * 16 15 13 18 18 N 1.31795 * 119.12323 * 44.05241 * 17 16 15 19 19 C 1.32335 * 120.81990 * 180.02562 * 18 17 16 20 20 C 1.38599 * 119.10066 * 359.97438 * 19 18 17 21 21 C 1.38599 * 118.40293 * 359.97438 * 20 19 18 22 22 N 1.31799 * 119.12436 * 224.04726 * 17 16 15 23 23 C 1.53779 * 113.69018 * 195.81013 * 16 15 13 24 24 C 1.53780 * 87.07917 * 89.12823 * 23 16 15 25 25 C 1.53775 * 113.61715 * 293.35027 * 16 15 13 26 26 C 1.40008 * 120.20980 * 0.25831 * 12 11 10 27 27 C 1.36323 * 120.10616 * 359.47699 * 26 12 11 28 28 H 0.96996 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.05169 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94571 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99690 * 4.89694 * 15 13 12 32 32 H 1.08000 * 120.44490 * 180.02562 * 19 18 17 33 33 H 1.08006 * 120.79686 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.44475 * 179.97438 * 21 20 19 35 35 H 1.08996 * 113.61295 * 203.67859 * 23 16 15 36 36 H 1.09002 * 113.61360 * 334.58008 * 23 16 15 37 37 H 1.08998 * 113.61814 * 270.88080 * 24 23 16 38 38 H 1.09004 * 113.61121 * 139.98293 * 24 23 16 39 39 H 1.09001 * 113.61406 * 25.34604 * 25 16 15 40 40 H 1.08998 * 113.61574 * 156.24940 * 25 16 15 41 41 H 1.08000 * 119.94767 * 179.74447 * 26 12 11 42 42 H 1.08002 * 120.05382 * 180.23217 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6964 -1.2126 5 1 1.2754 2.7464 -0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0076 -1.2143 -0.0005 8 1 3.0749 -1.2218 0.1650 9 6 1.3188 -2.4267 -0.2172 10 6 1.7921 -3.6214 0.3604 11 6 1.1236 -4.7902 0.1478 12 6 -0.0319 -4.8046 -0.6428 13 6 -0.7520 -6.0733 -0.8705 14 8 -0.3416 -7.1032 -0.3714 15 7 -1.8642 -6.0896 -1.6315 16 6 -2.6387 -7.3254 -1.7702 17 6 -3.2494 -7.7822 -0.4704 18 7 -3.8329 -6.8955 0.3108 19 6 -4.3795 -7.2597 1.4597 20 6 -4.3325 -8.5928 1.8359 21 6 -3.7113 -9.4957 0.9876 22 7 -3.1859 -9.0579 -0.1452 23 6 -3.6324 -7.3033 -2.9436 24 6 -2.4933 -7.8566 -3.8160 25 6 -1.8930 -8.4383 -2.5252 26 6 -0.5034 -3.6208 -1.2229 27 6 0.1554 -2.4461 -1.0115 28 1 -0.4850 0.8400 0.0004 29 1 2.6831 -3.6112 0.9706 30 1 1.4859 -5.7065 0.5898 31 1 -2.1518 -5.2832 -2.0874 32 1 -4.8564 -6.5280 2.0950 33 1 -4.7695 -8.9200 2.7679 34 1 -3.6555 -10.5423 1.2484 35 1 -4.4657 -7.9955 -2.8231 36 1 -3.9515 -6.3003 -3.2268 37 1 -1.8778 -7.0820 -4.2734 38 1 -2.8177 -8.6160 -4.5276 39 1 -0.8078 -8.3515 -2.4706 40 1 -2.2508 -9.4407 -2.2902 41 1 -1.3928 -3.6375 -1.8353 42 1 -0.2112 -1.5328 -1.4564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881999632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:28 Heat of formation + Delta-G solvation = 37.672169 kcal Electronic energy + Delta-G solvation = -26446.749191 eV Core-core repulsion = 22777.464105 eV Total energy + Delta-G solvation = -3669.285086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35108 -40.92585 -39.56247 -38.43678 -35.63571 -34.76641 -34.17983 -33.00152 -31.79435 -31.31963 -28.05247 -26.93197 -26.84119 -25.31010 -24.21561 -23.34058 -22.80117 -21.43635 -20.31869 -19.36119 -18.58594 -18.42893 -18.27297 -17.19471 -16.79366 -16.41517 -16.00393 -15.84048 -15.75625 -15.50557 -15.22455 -15.03200 -14.79716 -14.44215 -14.39495 -13.90497 -13.66566 -13.36040 -13.28494 -13.00928 -12.84091 -12.64534 -12.38513 -12.20945 -11.93038 -11.82459 -11.76089 -11.64973 -11.50107 -11.38153 -11.17336 -10.76772 -10.35459 -10.18573 -10.07700 -9.59388 -9.36879 -8.73017 -6.50678 -0.07434 0.19000 0.41795 1.11813 1.39669 1.44551 1.52132 2.07944 2.17637 2.23487 2.74436 2.78644 2.96478 3.26218 3.54260 3.65976 3.72145 3.75662 3.90820 4.05989 4.19419 4.22340 4.30012 4.34373 4.40545 4.56074 4.71534 4.80427 4.84361 4.89829 4.99946 5.03325 5.06561 5.12279 5.14587 5.27709 5.30474 5.45696 5.57869 5.68384 5.79227 5.92673 5.98245 6.09492 6.22077 6.53775 6.68214 6.77743 6.87387 7.16023 7.43394 8.21598 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.003064 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.964471 B = 9135.470752 C = 9535.001373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.084 0.916 9 C 0.104 3.896 10 C -0.247 4.247 11 C -0.037 4.037 12 C -0.284 4.284 13 C 0.578 3.422 14 O -0.595 6.595 15 N -0.693 5.693 16 C 0.199 3.801 17 C 0.310 3.690 18 N -0.537 5.537 19 C 0.124 3.876 20 C -0.220 4.220 21 C 0.132 3.868 22 N -0.526 5.526 23 C -0.110 4.110 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.054 4.054 27 C -0.187 4.187 28 H 0.295 0.705 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.410 0.590 32 H 0.190 0.810 33 H 0.187 0.813 34 H 0.202 0.798 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.901 -10.618 -2.865 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.267 4.267 11 C -0.056 4.056 12 C -0.288 4.288 13 C 0.371 3.629 14 O -0.478 6.478 15 N -0.344 5.344 16 C 0.110 3.890 17 C 0.041 3.959 18 N -0.251 5.251 19 C -0.041 4.041 20 C -0.242 4.242 21 C -0.034 4.034 22 N -0.240 5.240 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.073 4.073 27 C -0.207 4.207 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.248 0.752 32 H 0.206 0.794 33 H 0.204 0.796 34 H 0.219 0.781 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.464 -10.868 -3.354 16.149 hybrid contribution 0.085 0.827 1.262 1.511 sum -11.379 -10.041 -2.092 15.319 Atomic orbital electron populations 1.69736 1.09058 1.31393 1.33113 1.26901 0.95678 1.04683 0.90939 0.85120 0.78709 0.74971 0.80200 1.18138 1.18839 1.18479 1.20063 0.96525 0.91428 1.42694 0.89761 1.18139 0.91742 0.92778 0.87290 1.20894 1.04268 0.93498 1.08018 1.20472 0.93553 0.96647 0.94971 1.19209 1.02701 0.92787 1.14134 1.18372 0.79688 0.88204 0.76600 1.90627 1.68743 1.35596 1.52872 1.45259 1.25486 1.12539 1.51157 1.20037 0.93915 0.86840 0.88211 1.23249 0.91198 0.85660 0.95777 1.68193 1.10780 1.39492 1.06628 1.23848 0.91965 0.96588 0.91703 1.23295 1.02324 0.94840 1.03698 1.23933 0.88895 1.02543 0.87994 1.68088 1.18305 1.17338 1.20262 1.23144 0.96514 1.03646 0.91531 1.22831 0.96428 1.01067 0.95828 1.23148 0.99293 0.98393 0.95463 1.20738 0.97799 0.91688 0.97105 1.21052 0.99573 0.97093 1.02960 0.89383 0.87788 0.88384 0.75208 0.79354 0.79552 0.78141 0.87956 0.88824 0.89698 0.88257 0.93495 0.87844 0.85944 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.49 10.85 21.87 0.24 -39.26 16 2 C 0.04 1.68 5.26 85.35 0.45 2.13 16 3 Si 0.99 35.53 29.57 68.60 2.03 37.56 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.48 -24.66 9.05 23.46 0.21 -24.45 16 8 H 0.08 4.14 7.87 -2.91 -0.02 4.12 16 9 C 0.10 5.49 5.55 -21.28 -0.12 5.38 16 10 C -0.25 -12.62 9.73 22.47 0.22 -12.41 16 11 C -0.04 -1.86 9.52 22.25 0.21 -1.65 16 12 C -0.28 -13.49 5.89 -19.93 -0.12 -13.60 16 13 C 0.58 25.61 7.31 86.73 0.63 26.25 16 14 O -0.60 -29.67 14.93 -3.99 -0.06 -29.73 16 15 N -0.69 -24.34 4.99 -426.94 -2.13 -26.47 16 16 C 0.20 6.14 0.94 3.38 0.00 6.14 16 17 C 0.31 10.23 6.10 138.75 0.85 11.08 16 18 N -0.54 -17.61 10.21 -187.83 -1.92 -19.53 16 19 C 0.12 3.08 11.31 84.70 0.96 4.04 16 20 C -0.22 -4.22 10.17 22.44 0.23 -3.99 16 21 C 0.13 2.92 11.30 84.70 0.96 3.88 16 22 N -0.53 -15.88 8.92 -187.84 -1.67 -17.55 16 23 C -0.11 -2.39 7.36 31.12 0.23 -2.16 16 24 C -0.12 -2.60 7.99 31.12 0.25 -2.35 16 25 C -0.12 -3.61 6.73 31.12 0.21 -3.40 16 26 C -0.05 -2.46 9.47 22.25 0.21 -2.25 16 27 C -0.19 -9.46 8.59 22.47 0.19 -9.26 16 28 H 0.30 12.89 8.29 -92.71 -0.77 12.13 16 29 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 30 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 31 H 0.41 12.69 6.67 -92.71 -0.62 12.07 16 32 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.10 2.00 8.09 -2.39 -0.02 1.98 16 36 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.05 1.66 7.32 -2.39 -0.02 1.64 16 40 H 0.10 2.91 7.21 -2.39 -0.02 2.89 16 41 H 0.12 4.59 6.38 -2.91 -0.02 4.57 16 42 H 0.12 5.92 6.25 -2.91 -0.02 5.90 16 Total: -1.00 -70.99 355.38 2.50 -68.48 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: 0.45 Total: 43.12 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 5.57 Total: -16.63 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -5.48 Total: -102.80 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.06 Total: -29.73 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -70.99 2.50 -68.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881999632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.155 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds