Wall clock time and date at job start Tue Mar 31 2020 14:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48503 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47475 * 300.00431 * 3 2 1 6 6 H 1.48504 * 109.46774 * 60.00869 * 3 2 1 7 7 C 1.37884 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99638 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.01714 * 59.94584 * 9 7 2 11 11 C 1.53869 * 110.03390 * 298.54572 * 9 7 2 12 12 C 1.54270 * 106.63967 * 240.69268 * 11 9 7 13 13 C 1.54961 * 104.16191 * 336.44607 * 12 11 9 14 14 H 1.09001 * 110.71970 * 279.57802 * 13 12 11 15 15 N 1.46500 * 110.92632 * 156.29508 * 13 12 11 16 16 C 1.37711 * 119.99763 * 91.53512 * 15 13 12 17 17 C 1.38152 * 120.64712 * 359.72712 * 16 15 13 18 18 C 1.39254 * 119.01923 * 179.77419 * 17 16 15 19 19 C 1.50699 * 119.78737 * 180.24821 * 18 17 16 20 20 F 1.39901 * 109.47012 * 300.25721 * 19 18 17 21 21 F 1.39905 * 109.47131 * 60.25503 * 19 18 17 22 22 N 1.31654 * 120.43029 * 0.50208 * 18 17 16 23 23 C 1.33790 * 121.22458 * 359.74818 * 22 18 17 24 24 N 1.32855 * 132.41518 * 179.97438 * 23 22 18 25 25 C 1.32731 * 109.74421 * 179.97438 * 24 23 22 26 26 N 1.31066 * 109.62399 * 0.02562 * 25 24 23 27 27 N 1.36513 * 120.63999 * 179.97438 * 16 15 13 28 28 C 1.54268 * 110.02899 * 181.37695 * 9 7 2 29 29 H 0.97005 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.03268 * 0.02562 * 11 9 7 31 31 H 1.08995 * 110.03391 * 121.38661 * 11 9 7 32 32 H 1.08997 * 110.48585 * 95.09409 * 12 11 9 33 33 H 1.09002 * 110.48442 * 217.73292 * 12 11 9 34 34 H 0.96997 * 119.99821 * 271.54278 * 15 13 12 35 35 H 1.08002 * 120.48756 * 359.97438 * 17 16 15 36 36 H 1.09002 * 109.47277 * 180.25497 * 19 18 17 37 37 H 1.08000 * 125.19040 * 179.97438 * 25 24 23 38 38 H 1.08997 * 110.48788 * 261.57302 * 28 9 7 39 39 H 1.09001 * 110.48482 * 24.21983 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6197 -2.5656 -0.8868 11 6 0.3895 -2.6105 1.2696 12 6 0.8856 -3.8566 2.0319 13 6 1.5491 -4.7310 0.9381 14 1 0.7960 -5.2861 0.3787 15 7 2.5349 -5.6428 1.5237 16 6 2.1559 -6.9078 1.9144 17 6 0.8486 -7.3288 1.7654 18 6 0.5036 -8.6166 2.1676 19 6 -0.9162 -9.0957 2.0078 20 9 -1.7735 -8.2651 2.7373 21 9 -1.2712 -9.0595 0.6550 22 7 1.4088 -9.4166 2.6911 23 6 2.6774 -9.0211 2.8463 24 7 3.7518 -9.6288 3.3377 25 6 4.7961 -8.8118 3.2772 26 7 4.4302 -7.6679 2.7522 27 7 3.0638 -7.7683 2.4610 28 6 2.2414 -3.6813 0.0336 29 1 -0.4850 0.8401 0.0004 30 1 0.5162 -1.7203 1.8859 31 1 -0.6596 -2.7309 0.9999 32 1 1.6163 -3.5743 2.7898 33 1 0.0472 -4.3842 2.4868 34 1 3.4544 -5.3555 1.6363 35 1 0.1058 -6.6700 1.3403 36 1 -0.9986 -10.1177 2.3778 37 1 5.7947 -9.0525 3.6105 38 1 2.3924 -4.0817 -0.9688 39 1 3.1914 -3.3705 0.4684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882412385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:35 Heat of formation + Delta-G solvation = 31.315738 kcal Electronic energy + Delta-G solvation = -26985.654585 eV Core-core repulsion = 22794.157085 eV Total energy + Delta-G solvation = -4191.497500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.33320 -47.31613 -43.02954 -39.49849 -38.14340 -35.96221 -33.42566 -32.12972 -31.76540 -30.22766 -28.45856 -27.74700 -27.23891 -24.63427 -23.71412 -23.01729 -21.83970 -20.60502 -19.41976 -18.96965 -18.44864 -17.88895 -17.60985 -17.06062 -16.73129 -16.60740 -15.74530 -15.33776 -15.09199 -14.90072 -14.54701 -14.23340 -14.12362 -13.66476 -13.57730 -13.08428 -12.96047 -12.89752 -12.65837 -12.62943 -11.97987 -11.76133 -11.38444 -11.19452 -11.07030 -10.67308 -10.58833 -10.38956 -10.36427 -10.26778 -10.02786 -9.90316 -9.71138 -9.47513 -8.90642 -8.52179 -8.06059 -6.16004 -4.20347 0.24265 0.61254 1.44853 2.38830 2.58507 2.72822 3.15756 3.20070 3.29339 3.31867 3.62154 3.77267 4.04061 4.30686 4.32352 4.55329 4.64474 4.81984 4.97237 5.10465 5.11669 5.18374 5.24167 5.40996 5.67014 5.90809 5.93702 6.04653 6.11498 6.16242 6.29102 6.36289 6.60006 6.67175 6.96883 7.00810 7.08991 7.30427 7.51834 7.70946 7.74022 7.80146 8.25829 8.82345 9.44927 10.92935 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.003346 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.861083 B = 8365.331370 C = 9822.644087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.033 0.967 11 C -0.091 4.091 12 C -0.136 4.136 13 C 0.126 3.874 14 H 0.097 0.903 15 N -0.676 5.676 16 C 0.504 3.496 17 C -0.303 4.303 18 C 0.194 3.806 19 C 0.331 3.669 20 F -0.183 7.183 21 F -0.184 7.184 22 N -0.493 5.493 23 C 0.486 3.514 24 N -0.536 5.536 25 C 0.257 3.743 26 N -0.345 5.345 27 N -0.360 5.360 28 C -0.117 4.117 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.417 0.583 35 H 0.174 0.826 36 H 0.141 0.859 37 H 0.232 0.768 38 H 0.057 0.943 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 -16.411 4.355 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.130 4.130 12 C -0.175 4.175 13 C 0.023 3.977 14 H 0.115 0.885 15 N -0.299 5.299 16 C 0.274 3.726 17 C -0.338 4.338 18 C 0.035 3.965 19 C 0.276 3.724 20 F -0.165 7.165 21 F -0.165 7.165 22 N -0.215 5.215 23 C 0.125 3.875 24 N -0.270 5.270 25 C -0.045 4.045 26 N -0.176 5.176 27 N -0.146 5.146 28 C -0.155 4.155 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.192 0.808 36 H 0.158 0.842 37 H 0.248 0.752 38 H 0.076 0.924 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.326 -16.759 4.631 17.437 hybrid contribution 0.930 2.035 -0.226 2.249 sum 2.255 -14.724 4.405 15.533 Atomic orbital electron populations 1.69969 1.05847 1.26634 1.49919 1.24966 0.94861 0.99113 0.94987 0.86581 0.80140 0.83878 0.77686 1.19825 1.20959 1.20995 1.21210 0.92760 0.90248 1.51415 0.92582 1.19218 0.92107 0.91263 0.94403 0.94838 1.22064 0.98451 0.94397 0.98080 1.22917 0.99394 0.97823 0.97348 1.22844 0.90144 0.89191 0.95538 0.88473 1.45313 1.14965 1.09061 1.60582 1.18009 0.86278 0.82685 0.85634 1.21009 0.93818 0.99930 1.19025 1.21639 0.95088 0.89807 0.89941 1.20016 0.81775 0.95631 0.74956 1.93077 1.71113 1.75244 1.77023 1.93072 1.92262 1.97482 1.33731 1.67418 0.96949 1.33869 1.23238 1.22516 0.92472 0.79563 0.92919 1.70961 0.96517 1.30455 1.29034 1.26236 0.99391 0.86002 0.92866 1.78390 0.86340 1.23889 1.28953 1.48876 1.08998 1.13624 1.43078 1.22814 1.00429 0.95320 0.96937 0.92925 0.91092 0.93581 0.91914 0.92490 0.74472 0.80833 0.84189 0.75212 0.92449 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 12.33 55.43 0.68 -23.10 16 2 C 0.06 1.63 5.07 -17.82 -0.09 1.54 16 3 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -12.95 8.34 -34.44 -0.29 -13.24 16 8 H 0.06 1.40 7.55 -52.49 -0.40 1.00 16 9 C 0.05 1.06 2.84 -90.66 -0.26 0.81 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -1.85 5.55 -25.61 -0.14 -1.99 16 12 C -0.14 -2.16 6.53 -25.03 -0.16 -2.32 16 13 C 0.13 1.78 2.96 -65.90 -0.20 1.59 16 14 H 0.10 1.27 6.40 -51.93 -0.33 0.93 16 15 N -0.68 -8.81 5.31 -51.56 -0.27 -9.08 16 16 C 0.50 6.76 7.76 -152.98 -1.19 5.57 16 17 C -0.30 -3.70 8.81 -39.24 -0.35 -4.05 16 18 C 0.19 2.31 6.30 -82.29 -0.52 1.79 16 19 C 0.33 3.05 5.55 36.01 0.20 3.25 16 20 F -0.18 -1.90 17.25 2.25 0.04 -1.86 16 21 F -0.18 -1.87 17.26 2.25 0.04 -1.83 16 22 N -0.49 -6.81 10.36 -10.18 -0.11 -6.92 16 23 C 0.49 7.32 9.00 -323.16 -2.91 4.42 16 24 N -0.54 -7.80 11.26 -15.66 -0.18 -7.97 16 25 C 0.26 3.04 12.98 -91.96 -1.19 1.85 16 26 N -0.35 -4.73 12.76 29.26 0.37 -4.36 16 27 N -0.36 -5.18 3.93 -12.98 -0.05 -5.23 16 28 C -0.12 -1.99 5.97 -25.07 -0.15 -2.14 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.07 1.65 7.17 -51.93 -0.37 1.28 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.42 5.38 8.68 -40.82 -0.35 5.03 16 35 H 0.17 1.92 6.24 -52.49 -0.33 1.59 16 36 H 0.14 0.89 8.11 -51.93 -0.42 0.46 16 37 H 0.23 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.15 7.56 -51.93 -0.39 0.75 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -29.04 337.79 -10.91 -39.95 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.27 Total: 3.12 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -7.24 Total: -2.94 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.45 Total: -56.66 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.04 -10.91 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882412385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.270 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds