Wall clock time and date at job start Tue Mar 31 2020 14:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38350 * 119.45720 * 2 1 4 4 C 1.38347 * 119.30706 * 179.69879 * 3 2 1 5 5 C 1.40054 * 118.28125 * 0.51761 * 4 3 2 6 6 C 1.47796 * 120.55546 * 179.78154 * 5 4 3 7 7 O 1.21552 * 119.99213 * 174.06101 * 6 5 4 8 8 N 1.34769 * 120.00522 * 354.06243 * 6 5 4 9 9 C 1.39179 * 120.00094 * 183.79298 * 8 6 5 10 10 C 1.39688 * 119.58030 * 339.73299 * 9 8 6 11 11 C 1.38643 * 119.49756 * 179.97438 * 10 9 8 12 12 C 1.38352 * 118.67267 * 359.97438 * 11 10 9 13 13 C 1.40579 * 119.12906 * 0.02562 * 12 11 10 14 14 C 1.41335 * 119.78226 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00398 * 7.94148 * 14 13 12 16 16 C 1.40032 * 120.00136 * 187.94368 * 14 13 12 17 17 N 1.30737 * 120.00208 * 180.70206 * 16 14 13 18 18 Si 1.86803 * 119.99675 * 0.70816 * 16 14 13 19 19 H 1.48499 * 109.46914 * 180.02562 * 18 16 14 20 20 H 1.48508 * 109.46894 * 299.99540 * 18 16 14 21 21 H 1.48498 * 109.47296 * 59.99632 * 18 16 14 22 22 N 1.31927 * 119.57376 * 159.98509 * 9 8 6 23 23 C 1.39533 * 118.87547 * 359.50620 * 5 4 3 24 24 C 1.50706 * 119.71323 * 180.25305 * 23 5 4 25 25 C 1.53003 * 117.49612 * 175.84169 * 24 23 5 26 26 C 1.52999 * 117.49801 * 107.18335 * 24 23 5 27 27 N 1.31690 * 120.57023 * 0.22748 * 23 5 4 28 28 H 1.09001 * 109.47221 * 270.01997 * 1 2 3 29 29 H 1.08998 * 109.46984 * 30.02665 * 1 2 3 30 30 H 1.09003 * 109.46989 * 150.01591 * 1 2 3 31 31 H 1.08001 * 120.34702 * 359.96133 * 3 2 1 32 32 H 1.07995 * 120.86164 * 180.27834 * 4 3 2 33 33 H 0.96998 * 120.00132 * 3.79441 * 8 6 5 34 34 H 1.08002 * 120.25288 * 359.97070 * 10 9 8 35 35 H 1.08002 * 120.66187 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.43175 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00548 * 354.80076 * 17 16 14 38 38 H 1.09000 * 115.55362 * 321.50526 * 24 23 5 39 39 H 1.09000 * 117.49956 * 359.97438 * 25 24 23 40 40 H 1.08998 * 117.50133 * 145.02167 * 25 24 23 41 41 H 1.09001 * 117.49618 * 214.97339 * 26 24 23 42 42 H 1.08997 * 117.50110 * 359.97276 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5709 1.2010 0.0063 5 6 4.2313 -0.0340 0.0014 6 6 5.7079 -0.0965 0.0030 7 8 6.2706 -1.1689 0.1076 8 7 6.4305 1.0353 -0.1116 9 6 7.8186 0.9699 -0.1896 10 6 8.4818 -0.1720 0.2659 11 6 9.8645 -0.2355 0.1869 12 6 10.5492 0.8424 -0.3454 13 6 9.8244 1.9632 -0.7868 14 6 10.5099 3.0722 -1.3324 15 1 11.5701 3.0088 -1.5282 16 6 9.8145 4.2533 -1.6190 17 7 10.4459 5.2745 -2.1365 18 14 7.9847 4.3699 -1.2619 19 1 7.4886 5.7137 -1.6533 20 1 7.2617 3.3305 -2.0381 21 1 7.7489 4.1578 0.1888 22 7 8.4914 1.9892 -0.6883 23 6 3.4715 -1.2044 0.0009 24 6 4.1626 -2.5436 0.0014 25 6 3.2836 -3.7921 0.0992 26 6 4.1294 -3.3552 1.2980 27 7 2.1558 -1.1487 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6443 2.1381 -0.0006 32 1 4.1273 2.1266 0.0110 33 1 5.9832 1.8955 -0.1397 34 1 7.9217 -0.9991 0.6767 35 1 10.3965 -1.1090 0.5340 36 1 11.6264 0.8230 -0.4208 37 1 11.4084 5.2419 -2.2520 38 1 5.0626 -2.6085 -0.6100 39 1 2.2055 -3.6448 0.1636 40 1 3.6055 -4.6784 -0.4474 41 1 5.0074 -3.9544 1.5393 42 1 3.6081 -2.9204 2.1507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:14 Heat of formation + Delta-G solvation = 58.674791 kcal Electronic energy + Delta-G solvation = -26395.829436 eV Core-core repulsion = 22727.455092 eV Total energy + Delta-G solvation = -3668.374344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13623 -39.74414 -38.10168 -37.01105 -34.70978 -33.75560 -33.12847 -32.22479 -31.16190 -29.69553 -28.26036 -25.49597 -24.90718 -23.40577 -22.47158 -22.06273 -21.72633 -20.86314 -20.03355 -18.55325 -17.91687 -17.04648 -16.40302 -15.94325 -15.50054 -15.39041 -15.06710 -14.79395 -14.58442 -14.27216 -14.19736 -13.68614 -13.34239 -13.02278 -12.96310 -12.75757 -12.62937 -12.47023 -12.28063 -12.00176 -11.83460 -11.49474 -11.18396 -10.90394 -10.74262 -10.42940 -10.39027 -10.09792 -9.98900 -9.81332 -9.66603 -9.26773 -9.04676 -8.93358 -8.59931 -7.83050 -7.53791 -7.25549 -4.82151 0.43588 0.95918 2.27013 2.59605 2.95606 3.12171 3.46339 3.52594 3.60446 3.82250 3.91633 4.01933 4.32750 4.34121 4.42804 4.54052 4.60057 4.76973 5.00283 5.03048 5.08134 5.14413 5.24783 5.28255 5.45145 5.46015 5.64267 5.68075 5.74664 5.81884 5.86002 5.90620 5.99170 6.17510 6.27552 6.36830 6.42440 6.47699 6.53732 7.06890 7.12534 7.39481 7.49738 7.57013 7.69866 7.72931 8.06481 8.21648 8.35968 8.60148 9.33879 9.96097 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003869 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.565029 B = 7234.613594 C = 8851.642978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.185 4.185 4 C -0.036 4.036 5 C -0.185 4.185 6 C 0.566 3.434 7 O -0.497 6.497 8 N -0.648 5.648 9 C 0.384 3.616 10 C -0.311 4.311 11 C -0.036 4.036 12 C -0.274 4.274 13 C 0.273 3.727 14 C -0.476 4.476 15 H 0.084 0.916 16 C 0.043 3.957 17 N -0.806 5.806 18 Si 1.153 2.847 19 H -0.332 1.332 20 H -0.283 1.283 21 H -0.294 1.294 22 N -0.599 5.599 23 C 0.227 3.773 24 C -0.111 4.111 25 C -0.168 4.168 26 C -0.150 4.150 27 N -0.487 5.487 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.404 0.596 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.284 0.716 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.934 -9.032 4.957 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.015 3.985 3 C -0.205 4.205 4 C -0.062 4.062 5 C -0.191 4.191 6 C 0.353 3.647 7 O -0.373 6.373 8 N -0.292 5.292 9 C 0.154 3.846 10 C -0.336 4.336 11 C -0.060 4.060 12 C -0.296 4.296 13 C 0.149 3.851 14 C -0.508 4.508 15 H 0.102 0.898 16 C -0.178 4.178 17 N -0.428 5.428 18 Si 0.989 3.011 19 H -0.265 1.265 20 H -0.212 1.212 21 H -0.223 1.223 22 N -0.325 5.325 23 C 0.089 3.911 24 C -0.129 4.129 25 C -0.205 4.205 26 C -0.188 4.188 27 N -0.196 5.196 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.240 0.760 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.618 -8.834 4.539 21.989 hybrid contribution 2.480 -0.172 0.283 2.502 sum -17.138 -9.007 4.823 19.952 Atomic orbital electron populations 1.20781 0.88390 1.03821 1.03349 1.21516 0.97238 0.88158 0.91558 1.21889 0.94334 0.99649 1.04622 1.21849 0.94915 0.97358 0.92115 1.20635 0.94010 0.94815 1.09601 1.17870 0.86082 0.83781 0.76958 1.90620 1.70791 1.28369 1.47483 1.43123 1.05743 1.09618 1.70759 1.18067 0.81754 0.91986 0.92806 1.21796 0.94599 1.01395 1.15799 1.20971 0.93770 0.96435 0.94831 1.21633 0.99179 0.96766 1.12046 1.18259 0.85614 0.92581 0.88608 1.20730 0.97433 0.96734 1.35927 0.89786 1.27746 1.10059 0.90899 0.89091 1.70632 1.12500 1.31751 1.27911 0.81844 0.71027 0.70998 0.77204 1.26534 1.21153 1.22257 1.65872 1.09768 1.29073 1.27768 1.20474 0.88120 0.93355 0.89186 1.21199 1.01027 0.86737 1.03959 1.22999 0.98756 0.97123 1.01642 1.22842 1.02306 1.02278 0.91373 1.67344 1.08768 1.28988 1.14514 0.90030 0.90334 0.90186 0.83949 0.84081 0.76019 0.83416 0.87496 0.87614 0.90517 0.83975 0.87794 0.88740 0.88163 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 36.01 0.37 -0.34 16 2 C 0.15 1.58 6.78 -82.51 -0.56 1.02 16 3 C -0.19 -1.78 9.72 -39.50 -0.38 -2.16 16 4 C -0.04 -0.42 9.64 -38.86 -0.37 -0.79 16 5 C -0.19 -2.64 5.89 -104.82 -0.62 -3.26 16 6 C 0.57 9.72 7.64 -12.36 -0.09 9.62 16 7 O -0.50 -9.29 10.10 5.32 0.05 -9.24 16 8 N -0.65 -12.13 5.37 -12.28 -0.07 -12.20 16 9 C 0.38 8.74 7.51 -155.04 -1.16 7.58 16 10 C -0.31 -6.88 8.91 -38.89 -0.35 -7.23 16 11 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.27 -6.47 9.83 -38.66 -0.38 -6.85 16 13 C 0.27 7.15 6.39 -85.00 -0.54 6.60 16 14 C -0.48 -12.91 9.58 -37.73 -0.36 -13.28 16 15 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 16 C 0.04 1.17 5.52 -17.35 -0.10 1.07 16 17 N -0.81 -21.82 13.65 55.55 0.76 -21.06 16 18 Si 1.15 27.54 25.50 -169.99 -4.34 23.21 16 19 H -0.33 -7.80 7.11 56.52 0.40 -7.40 16 20 H -0.28 -6.68 6.75 56.52 0.38 -6.30 16 21 H -0.29 -6.89 7.09 56.52 0.40 -6.49 16 22 N -0.60 -15.09 4.59 -10.27 -0.05 -15.14 16 23 C 0.23 3.16 6.50 -82.17 -0.53 2.62 16 24 C -0.11 -1.49 4.51 -91.77 -0.41 -1.90 16 25 C -0.17 -1.86 10.03 -26.69 -0.27 -2.12 16 26 C -0.15 -1.77 10.24 -26.69 -0.27 -2.04 16 27 N -0.49 -6.12 9.20 -5.41 -0.05 -6.17 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.37 6.55 -52.49 -0.34 1.03 16 33 H 0.40 6.66 6.95 -40.82 -0.28 6.38 16 34 H 0.15 3.15 5.12 -53.15 -0.27 2.88 16 35 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.11 2.33 8.06 -52.49 -0.42 1.90 16 37 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 38 H 0.14 2.15 6.29 -51.93 -0.33 1.82 16 39 H 0.10 1.15 7.55 -51.93 -0.39 0.76 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -30.76 350.52 -9.86 -40.62 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.02 Total: 7.33 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -6.44 Total: -12.63 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.60 Total: -54.58 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.05 Total: -9.24 kcal Atomic # 14 Polarization: 27.54 SS G_CDS: -4.34 Total: 23.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.76 -9.86 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.296 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds