Wall clock time and date at job start Tue Mar 31 2020 14:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38350 * 119.45720 * 2 1 4 4 C 1.38347 * 119.30706 * 179.69879 * 3 2 1 5 5 C 1.40054 * 118.28125 * 0.51761 * 4 3 2 6 6 C 1.47796 * 120.55546 * 179.78154 * 5 4 3 7 7 O 1.21552 * 119.99213 * 174.06101 * 6 5 4 8 8 N 1.34769 * 120.00522 * 354.06243 * 6 5 4 9 9 C 1.39179 * 120.00094 * 183.79298 * 8 6 5 10 10 C 1.39688 * 119.58030 * 339.73299 * 9 8 6 11 11 C 1.38643 * 119.49756 * 179.97438 * 10 9 8 12 12 C 1.38352 * 118.67267 * 359.97438 * 11 10 9 13 13 C 1.40579 * 119.12906 * 0.02562 * 12 11 10 14 14 C 1.41335 * 119.78226 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00398 * 7.94148 * 14 13 12 16 16 C 1.40032 * 120.00136 * 187.94368 * 14 13 12 17 17 N 1.30737 * 120.00208 * 180.70206 * 16 14 13 18 18 Si 1.86803 * 119.99675 * 0.70816 * 16 14 13 19 19 H 1.48499 * 109.46914 * 180.02562 * 18 16 14 20 20 H 1.48508 * 109.46894 * 299.99540 * 18 16 14 21 21 H 1.48498 * 109.47296 * 59.99632 * 18 16 14 22 22 N 1.31927 * 119.57376 * 159.98509 * 9 8 6 23 23 C 1.39533 * 118.87547 * 359.50620 * 5 4 3 24 24 C 1.50706 * 119.71323 * 180.25305 * 23 5 4 25 25 C 1.53003 * 117.49612 * 175.84169 * 24 23 5 26 26 C 1.52999 * 117.49801 * 107.18335 * 24 23 5 27 27 N 1.31690 * 120.57023 * 0.22748 * 23 5 4 28 28 H 1.09001 * 109.47221 * 270.01997 * 1 2 3 29 29 H 1.08998 * 109.46984 * 30.02665 * 1 2 3 30 30 H 1.09003 * 109.46989 * 150.01591 * 1 2 3 31 31 H 1.08001 * 120.34702 * 359.96133 * 3 2 1 32 32 H 1.07995 * 120.86164 * 180.27834 * 4 3 2 33 33 H 0.96998 * 120.00132 * 3.79441 * 8 6 5 34 34 H 1.08002 * 120.25288 * 359.97070 * 10 9 8 35 35 H 1.08002 * 120.66187 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.43175 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00548 * 354.80076 * 17 16 14 38 38 H 1.09000 * 115.55362 * 321.50526 * 24 23 5 39 39 H 1.09000 * 117.49956 * 359.97438 * 25 24 23 40 40 H 1.08998 * 117.50133 * 145.02167 * 25 24 23 41 41 H 1.09001 * 117.49618 * 214.97339 * 26 24 23 42 42 H 1.08997 * 117.50110 * 359.97276 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5709 1.2010 0.0063 5 6 4.2313 -0.0340 0.0014 6 6 5.7079 -0.0965 0.0030 7 8 6.2706 -1.1689 0.1076 8 7 6.4305 1.0353 -0.1116 9 6 7.8186 0.9699 -0.1896 10 6 8.4818 -0.1720 0.2659 11 6 9.8645 -0.2355 0.1869 12 6 10.5492 0.8424 -0.3454 13 6 9.8244 1.9632 -0.7868 14 6 10.5099 3.0722 -1.3324 15 1 11.5701 3.0088 -1.5282 16 6 9.8145 4.2533 -1.6190 17 7 10.4459 5.2745 -2.1365 18 14 7.9847 4.3699 -1.2619 19 1 7.4886 5.7137 -1.6533 20 1 7.2617 3.3305 -2.0381 21 1 7.7489 4.1578 0.1888 22 7 8.4914 1.9892 -0.6883 23 6 3.4715 -1.2044 0.0009 24 6 4.1626 -2.5436 0.0014 25 6 3.2836 -3.7921 0.0992 26 6 4.1294 -3.3552 1.2980 27 7 2.1558 -1.1487 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6443 2.1381 -0.0006 32 1 4.1273 2.1266 0.0110 33 1 5.9832 1.8955 -0.1397 34 1 7.9217 -0.9991 0.6767 35 1 10.3965 -1.1090 0.5340 36 1 11.6264 0.8230 -0.4208 37 1 11.4084 5.2419 -2.2520 38 1 5.0626 -2.6085 -0.6100 39 1 2.2055 -3.6448 0.1636 40 1 3.6055 -4.6784 -0.4474 41 1 5.0074 -3.9544 1.5393 42 1 3.6081 -2.9204 2.1507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:13 Heat of formation + Delta-G solvation = 42.081211 kcal Electronic energy + Delta-G solvation = -26396.548988 eV Core-core repulsion = 22727.455092 eV Total energy + Delta-G solvation = -3669.093896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27187 -41.11290 -39.71217 -37.95136 -36.31511 -35.48846 -34.20343 -33.09188 -32.98770 -31.37696 -29.14466 -27.32066 -26.02541 -24.42956 -23.78345 -23.49857 -23.02541 -21.83169 -21.52965 -20.40051 -19.37989 -18.35825 -17.42974 -17.08695 -16.96576 -16.77398 -16.63249 -15.99272 -15.78131 -15.49489 -15.38924 -15.09455 -14.80819 -14.67032 -14.29516 -14.08257 -13.75423 -13.63901 -13.38619 -13.15193 -13.00097 -12.76877 -12.58899 -12.36204 -12.24643 -11.80892 -11.67764 -11.60801 -11.39806 -11.17451 -10.91117 -10.82070 -10.47515 -10.31870 -9.84722 -9.75268 -9.39624 -9.18274 -6.84365 -0.54270 0.09841 0.57418 0.71670 1.51074 1.59049 1.69474 1.77261 2.04305 2.43469 2.54508 2.66254 2.95438 3.10266 3.33658 3.51063 3.58038 3.63937 3.90310 4.04160 4.08949 4.18213 4.20454 4.27942 4.37360 4.60558 4.61392 4.66933 4.69625 4.76135 4.79690 4.81752 4.92072 4.99974 5.06046 5.15749 5.25085 5.31151 5.35661 5.36415 5.40353 5.58656 5.71676 5.78181 5.89629 6.21943 6.37721 6.62400 6.83781 6.91811 7.44849 7.93393 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003869 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.565029 B = 7234.613594 C = 8851.642978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.152 3.848 3 C -0.176 4.176 4 C -0.039 4.039 5 C -0.210 4.210 6 C 0.568 3.432 7 O -0.516 6.516 8 N -0.648 5.648 9 C 0.374 3.626 10 C -0.307 4.307 11 C -0.027 4.027 12 C -0.290 4.290 13 C 0.258 3.742 14 C -0.508 4.508 15 H 0.069 0.931 16 C 0.013 3.987 17 N -0.830 5.830 18 Si 1.185 2.815 19 H -0.327 1.327 20 H -0.281 1.281 21 H -0.289 1.289 22 N -0.612 5.612 23 C 0.217 3.783 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.147 4.147 27 N -0.500 5.500 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.181 0.819 32 H 0.157 0.843 33 H 0.414 0.586 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.115 0.885 37 H 0.281 0.719 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.209 -9.916 5.894 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.195 4.195 4 C -0.065 4.065 5 C -0.215 4.215 6 C 0.357 3.643 7 O -0.393 6.393 8 N -0.294 5.294 9 C 0.144 3.856 10 C -0.331 4.331 11 C -0.052 4.052 12 C -0.312 4.312 13 C 0.133 3.867 14 C -0.541 4.541 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.453 5.453 18 Si 1.017 2.983 19 H -0.260 1.260 20 H -0.209 1.209 21 H -0.217 1.217 22 N -0.338 5.338 23 C 0.079 3.921 24 C -0.151 4.151 25 C -0.186 4.186 26 C -0.185 4.185 27 N -0.210 5.210 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.174 0.826 33 H 0.251 0.749 34 H 0.177 0.823 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.915 -9.729 5.482 25.491 hybrid contribution 3.332 -0.110 0.066 3.334 sum -19.583 -9.839 5.548 22.607 Atomic orbital electron populations 1.20918 0.85557 1.05034 1.04600 1.22264 0.99084 0.87814 0.89430 1.22311 0.93513 1.01035 1.02670 1.22122 0.96079 0.96839 0.91428 1.20429 0.91862 0.96384 1.12855 1.18365 0.87329 0.82879 0.75688 1.90582 1.71575 1.28893 1.48246 1.43158 1.04219 1.10852 1.71132 1.18411 0.83514 0.91607 0.92113 1.22169 0.95104 1.01339 1.14464 1.21385 0.93720 0.96898 0.93158 1.21799 0.99882 0.96850 1.12634 1.18441 0.86437 0.93090 0.88758 1.20722 0.97050 0.97921 1.38441 0.91312 1.28571 1.12293 0.90717 0.88711 1.70658 1.12466 1.32227 1.29951 0.81458 0.68492 0.71042 0.77261 1.26004 1.20927 1.21747 1.65863 1.09573 1.30162 1.28210 1.20524 0.88811 0.93233 0.89503 1.21112 1.01172 0.87922 1.04892 1.23029 0.98524 0.96330 1.00753 1.22867 1.02657 1.01859 0.91113 1.67415 1.07973 1.30327 1.15324 0.88531 0.87778 0.90366 0.80125 0.82581 0.74866 0.82310 0.83673 0.86648 0.90837 0.86213 0.87563 0.87391 0.87790 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.16 71.24 0.72 -0.23 16 2 C 0.15 2.63 6.78 42.57 0.29 2.92 16 3 C -0.18 -2.71 9.72 22.32 0.22 -2.49 16 4 C -0.04 -0.80 9.64 22.74 0.22 -0.58 16 5 C -0.21 -5.72 5.89 -20.00 -0.12 -5.84 16 6 C 0.57 19.07 7.64 86.77 0.66 19.74 16 7 O -0.52 -19.08 10.10 -3.88 -0.04 -19.12 16 8 N -0.65 -23.59 5.37 -311.03 -1.67 -25.25 16 9 C 0.37 16.71 7.51 133.28 1.00 17.71 16 10 C -0.31 -13.12 8.91 22.72 0.20 -12.92 16 11 C -0.03 -1.14 10.15 22.39 0.23 -0.91 16 12 C -0.29 -13.57 9.83 22.87 0.22 -13.35 16 13 C 0.26 13.61 6.39 40.19 0.26 13.87 16 14 C -0.51 -28.47 9.58 23.47 0.22 -28.25 16 15 H 0.07 3.91 8.05 -2.91 -0.02 3.88 16 16 C 0.01 0.74 5.52 85.29 0.47 1.21 16 17 N -0.83 -46.19 13.65 21.84 0.30 -45.90 16 18 Si 1.18 55.95 25.50 68.60 1.75 57.70 16 19 H -0.33 -14.96 7.11 99.48 0.71 -14.25 16 20 H -0.28 -13.02 6.75 99.48 0.67 -12.35 16 21 H -0.29 -13.25 7.09 99.48 0.70 -12.54 16 22 N -0.61 -30.65 4.59 -186.40 -0.86 -31.51 16 23 C 0.22 5.80 6.50 42.89 0.28 6.08 16 24 C -0.13 -3.49 4.51 -11.54 -0.05 -3.55 16 25 C -0.15 -3.10 10.03 30.62 0.31 -2.79 16 26 C -0.15 -3.32 10.24 30.62 0.31 -3.00 16 27 N -0.50 -11.57 9.20 -171.04 -1.57 -13.14 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.46 8.07 -2.39 -0.02 0.45 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.16 2.62 6.55 -2.91 -0.02 2.60 16 33 H 0.41 13.07 6.95 -92.71 -0.64 12.43 16 34 H 0.16 6.52 5.12 -13.40 -0.07 6.45 16 35 H 0.15 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.28 15.16 8.72 -92.71 -0.81 14.35 16 38 H 0.12 3.68 6.29 -2.39 -0.02 3.66 16 39 H 0.11 2.16 7.55 -2.39 -0.02 2.14 16 40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.78 350.52 3.66 -64.12 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.30 Total: 25.48 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.45 Total: -12.38 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -3.80 Total: -115.80 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.04 Total: -19.12 kcal Atomic # 14 Polarization: 55.95 SS G_CDS: 1.75 Total: 57.70 kcal Total: -67.78 3.66 -64.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.198 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds