Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31693 * 119.71915 * 2 1 4 4 C 1.31930 * 121.87987 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.45661 * 179.97438 * 4 3 2 6 6 C 1.53002 * 117.50052 * 163.61773 * 5 4 3 7 7 C 1.53002 * 60.00233 * 252.51184 * 6 5 4 8 8 C 1.38354 * 121.08550 * 359.97438 * 4 3 2 9 9 C 1.38356 * 119.30722 * 359.72681 * 8 4 3 10 10 C 1.39543 * 119.71682 * 180.02562 * 2 1 3 11 11 C 1.47795 * 120.56074 * 359.97438 * 10 2 1 12 12 O 1.21548 * 120.00270 * 2.26743 * 11 10 2 13 13 N 1.34780 * 119.99741 * 182.26358 * 11 10 2 14 14 C 1.39180 * 119.99541 * 183.89745 * 13 11 10 15 15 C 1.39692 * 119.57867 * 340.55037 * 14 13 11 16 16 C 1.38653 * 119.49289 * 179.97438 * 15 14 13 17 17 C 1.38349 * 118.67232 * 0.02562 * 16 15 14 18 18 C 1.40582 * 119.13344 * 359.97438 * 17 16 15 19 19 C 1.41335 * 119.78480 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00102 * 5.26115 * 19 18 17 21 21 C 1.40034 * 119.99813 * 185.26076 * 19 18 17 22 22 N 1.30742 * 119.99913 * 184.63756 * 21 19 18 23 23 Si 1.86797 * 119.99929 * 4.64202 * 21 19 18 24 24 H 1.48502 * 109.47107 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.47161 * 299.99770 * 23 21 19 26 26 H 1.48506 * 109.47256 * 60.00141 * 23 21 19 27 27 N 1.31924 * 119.57537 * 160.78825 * 14 13 11 28 28 H 1.09000 * 109.46910 * 262.51587 * 1 2 3 29 29 H 1.08996 * 109.47092 * 22.51233 * 1 2 3 30 30 H 1.09005 * 109.47359 * 142.51403 * 1 2 3 31 31 H 1.08997 * 115.55276 * 309.32740 * 5 4 3 32 32 H 1.08996 * 117.49407 * 359.97438 * 6 5 4 33 33 H 1.08998 * 117.49991 * 145.01992 * 6 5 4 34 34 H 1.09002 * 117.49850 * 252.51272 * 7 6 5 35 35 H 1.08998 * 117.51785 * 107.47575 * 7 6 5 36 36 H 1.08003 * 120.34674 * 180.02562 * 8 4 3 37 37 H 1.07995 * 120.85906 * 180.29995 * 9 8 4 38 38 H 0.96995 * 120.00485 * 3.90396 * 13 11 10 39 39 H 1.07994 * 120.25666 * 359.96015 * 15 14 13 40 40 H 1.08000 * 120.66475 * 179.97438 * 16 15 14 41 41 H 1.08002 * 120.43640 * 180.02562 * 17 16 15 42 42 H 0.96995 * 119.99834 * 354.98220 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4782 1.1935 -0.0005 5 6 4.1693 2.5326 -0.0011 6 6 5.6505 2.5635 0.3812 7 6 4.5988 3.1065 1.3507 8 6 4.2367 0.0364 -0.0005 9 6 3.5990 -1.1915 0.0057 10 6 2.1987 -1.2119 -0.0005 11 6 1.4659 -2.4954 -0.0005 12 8 0.2512 -2.5018 -0.0417 13 7 2.1448 -3.6589 0.0450 14 6 1.4599 -4.8677 -0.0368 15 6 0.0915 -4.9052 0.2418 16 6 -0.5891 -6.1104 0.1592 17 6 0.1141 -7.2467 -0.1988 18 6 1.4903 -7.1439 -0.4669 19 6 2.2222 -8.2961 -0.8333 20 1 1.7101 -9.2341 -0.9894 21 6 3.6113 -8.2215 -0.9938 22 7 4.2769 -9.2628 -1.4203 23 14 4.5132 -6.6341 -0.5985 24 1 5.9657 -6.8144 -0.8496 25 1 3.9933 -5.5418 -1.4598 26 1 4.2977 -6.2845 0.8286 27 7 2.1122 -5.9644 -0.3719 28 1 -0.3633 -0.1339 1.0189 29 1 -0.3633 0.9493 -0.3935 30 1 -0.3634 -0.8155 -0.6254 31 1 3.8308 3.2361 -0.7618 32 1 6.1249 1.6151 0.6334 33 1 6.2868 3.2871 -0.1283 34 1 4.5432 4.1875 1.4791 35 1 4.3812 2.5156 2.2403 36 1 5.3154 0.0910 -0.0005 37 1 4.1664 -2.1103 0.0107 38 1 3.1105 -3.6538 0.1349 39 1 -0.4322 -4.0025 0.5196 40 1 -1.6470 -6.1611 0.3710 41 1 -0.3878 -8.2003 -0.2722 42 1 3.8205 -10.1078 -1.5560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = 61.573188 kcal Electronic energy + Delta-G solvation = -26053.118877 eV Core-core repulsion = 22384.870217 eV Total energy + Delta-G solvation = -3668.248660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15560 -39.86228 -38.25358 -37.22375 -34.92901 -33.71957 -32.92701 -32.32081 -31.16077 -29.63699 -27.78720 -25.83625 -25.20367 -23.16803 -22.76608 -22.26425 -21.81818 -20.92819 -20.01103 -18.56725 -17.96610 -17.21565 -16.74416 -15.89037 -15.54692 -15.46446 -15.15691 -15.05495 -14.53267 -14.24045 -13.98566 -13.68906 -13.42336 -13.14691 -12.89549 -12.81442 -12.55216 -12.31197 -12.19769 -12.05415 -11.89193 -11.77907 -11.12106 -11.02210 -10.90967 -10.84582 -10.39515 -10.11567 -10.03946 -9.79346 -9.70339 -9.26689 -9.04534 -9.00349 -8.60649 -7.81143 -7.53946 -7.27356 -4.82895 0.40884 0.98118 2.24747 2.59188 2.92658 3.07340 3.34902 3.45697 3.55836 3.64656 3.82674 3.90563 4.32330 4.35065 4.45934 4.47342 4.52604 4.57603 4.63084 4.74110 4.87057 5.16402 5.23151 5.36851 5.42961 5.46685 5.54950 5.68343 5.69630 5.73103 5.78897 5.81013 5.94436 5.98442 6.17579 6.36635 6.44791 6.47639 6.57915 7.06253 7.11593 7.38373 7.48386 7.56757 7.69561 7.73497 8.05560 8.20229 8.34146 8.59349 9.33581 9.94860 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003436 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.234676 B = 8146.218693 C = 9712.097744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.199 3.801 3 N -0.485 5.485 4 C 0.186 3.814 5 C -0.112 4.112 6 C -0.172 4.172 7 C -0.160 4.160 8 C -0.185 4.185 9 C -0.034 4.034 10 C -0.192 4.192 11 C 0.567 3.433 12 O -0.500 6.500 13 N -0.647 5.647 14 C 0.384 3.616 15 C -0.314 4.314 16 C -0.036 4.036 17 C -0.274 4.274 18 C 0.273 3.727 19 C -0.475 4.475 20 H 0.084 0.916 21 C 0.043 3.957 22 N -0.805 5.805 23 Si 1.152 2.848 24 H -0.331 1.331 25 H -0.280 1.280 26 H -0.294 1.294 27 N -0.599 5.599 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.404 0.596 39 H 0.150 0.850 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 20.660 3.859 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.061 3.939 3 N -0.195 5.195 4 C 0.048 3.952 5 C -0.131 4.131 6 C -0.209 4.209 7 C -0.197 4.197 8 C -0.205 4.205 9 C -0.060 4.060 10 C -0.197 4.197 11 C 0.355 3.645 12 O -0.377 6.377 13 N -0.291 5.291 14 C 0.153 3.847 15 C -0.339 4.339 16 C -0.060 4.060 17 C -0.297 4.297 18 C 0.149 3.851 19 C -0.507 4.507 20 H 0.102 0.898 21 C -0.178 4.178 22 N -0.427 5.427 23 Si 0.988 3.012 24 H -0.265 1.265 25 H -0.208 1.208 26 H -0.223 1.223 27 N -0.325 5.325 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.240 0.760 39 H 0.167 0.833 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.134 22.031 3.570 22.538 hybrid contribution -1.366 -1.986 0.116 2.413 sum 1.768 20.045 3.687 20.458 Atomic orbital electron populations 1.21179 0.87235 1.04365 1.04510 1.21504 0.97603 0.86038 0.88785 1.67381 1.09064 1.28694 1.14328 1.20553 0.89189 0.93736 0.91696 1.20819 0.96416 0.94856 1.00988 1.23129 0.90881 1.03613 1.03321 1.22979 1.02383 1.01343 0.93019 1.21867 1.01853 0.92117 1.04660 1.21847 0.93214 0.99009 0.91960 1.20714 0.94335 0.94749 1.09946 1.17886 0.87147 0.82817 0.76696 1.90575 1.12937 1.85988 1.48200 1.43127 1.11136 1.04384 1.70427 1.18078 0.89072 0.84122 0.93395 1.21850 0.93645 1.00256 1.18117 1.20975 0.98028 0.92423 0.94553 1.21635 0.95615 0.98043 1.14383 1.18262 0.89991 0.88879 0.87985 1.20733 0.94397 0.95488 1.40114 0.89795 1.27761 0.95770 1.05170 0.89142 1.70638 1.41440 1.02420 1.28156 0.81889 0.69686 0.72095 0.77566 1.26486 1.20836 1.22255 1.65961 1.38542 0.99130 1.28889 0.89873 0.91216 0.87018 0.85778 0.88054 0.87841 0.87995 0.88570 0.83878 0.84050 0.75958 0.83286 0.87479 0.87626 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.98 36.00 0.32 -1.14 16 2 C 0.20 2.73 6.82 -82.17 -0.56 2.17 16 3 N -0.49 -6.34 10.17 -5.41 -0.06 -6.40 16 4 C 0.19 2.05 6.46 -82.51 -0.53 1.52 16 5 C -0.11 -0.93 6.21 -91.77 -0.57 -1.50 16 6 C -0.17 -1.04 9.79 -26.73 -0.26 -1.30 16 7 C -0.16 -1.09 10.23 -26.73 -0.27 -1.36 16 8 C -0.19 -1.87 9.34 -39.50 -0.37 -2.24 16 9 C -0.03 -0.40 9.64 -38.86 -0.37 -0.77 16 10 C -0.19 -2.69 5.89 -104.82 -0.62 -3.31 16 11 C 0.57 9.57 7.65 -12.35 -0.09 9.48 16 12 O -0.50 -9.20 9.87 5.32 0.05 -9.14 16 13 N -0.65 -11.98 5.36 -12.27 -0.07 -12.05 16 14 C 0.38 8.67 7.52 -155.04 -1.17 7.51 16 15 C -0.31 -6.91 8.92 -38.89 -0.35 -7.25 16 16 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 17 C -0.27 -6.47 9.83 -38.66 -0.38 -6.85 16 18 C 0.27 7.10 6.40 -85.00 -0.54 6.56 16 19 C -0.48 -12.83 9.57 -37.73 -0.36 -13.19 16 20 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 21 C 0.04 1.15 5.52 -17.34 -0.10 1.05 16 22 N -0.80 -21.70 13.65 55.55 0.76 -20.94 16 23 Si 1.15 27.29 25.60 -169.99 -4.35 22.93 16 24 H -0.33 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.28 -6.51 6.61 56.52 0.37 -6.14 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 N -0.60 -15.01 4.54 -10.27 -0.05 -15.06 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 1.58 5.66 -51.93 -0.29 1.28 16 31 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.56 6.38 -51.93 -0.33 0.23 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.14 1.04 6.23 -52.48 -0.33 0.71 16 37 H 0.14 1.39 6.54 -52.49 -0.34 1.05 16 38 H 0.40 6.59 6.95 -40.82 -0.28 6.31 16 39 H 0.15 3.15 5.06 -53.45 -0.27 2.88 16 40 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 42 H 0.28 7.32 8.72 -40.82 -0.36 6.96 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -30.55 347.52 -9.93 -40.49 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.83 Total: 6.72 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -6.63 Total: -11.79 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.59 Total: -54.44 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.05 Total: -9.14 kcal Atomic # 14 Polarization: 27.29 SS G_CDS: -4.35 Total: 22.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.55 -9.93 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.059 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds