Wall clock time and date at job start Tue Mar 31 2020 14:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86794 * 120.00278 * 2 1 4 4 H 1.48497 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47187 * 300.00206 * 3 2 1 6 6 H 1.48508 * 109.47070 * 60.00146 * 3 2 1 7 7 C 1.40028 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.41346 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.40609 * 119.78509 * 180.02562 * 9 7 2 11 11 C 1.38302 * 119.12664 * 180.02562 * 10 9 7 12 12 C 1.38699 * 118.67223 * 359.73888 * 11 10 9 13 13 C 1.39636 * 119.49126 * 0.48413 * 12 11 10 14 14 N 1.39269 * 119.57175 * 179.79015 * 13 12 11 15 15 C 1.34777 * 119.99937 * 174.67957 * 14 13 12 16 16 O 1.21272 * 119.99922 * 4.81549 * 15 14 13 17 17 C 1.50702 * 119.99844 * 184.81549 * 15 14 13 18 18 H 1.08998 * 109.24945 * 60.52758 * 17 15 14 19 19 C 1.52724 * 109.25439 * 179.97438 * 17 15 14 20 20 C 1.53325 * 108.42508 * 171.55657 * 19 17 15 21 21 C 1.52770 * 108.35233 * 290.10496 * 20 19 17 22 22 C 1.50492 * 110.55944 * 50.80042 * 21 20 19 23 23 C 1.39180 * 117.97625 * 162.70835 * 22 21 20 24 24 C 1.38407 * 118.87526 * 179.79489 * 23 22 21 25 25 C 1.38245 * 118.83863 * 359.97438 * 24 23 22 26 26 N 1.31509 * 120.60763 * 0.08568 * 25 24 23 27 27 C 1.32695 * 122.40237 * 0.04279 * 26 25 24 28 28 N 1.31932 * 120.85019 * 359.50811 * 13 12 11 29 29 H 0.97006 * 119.99484 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.43645 * 359.97127 * 10 9 7 31 31 H 1.08003 * 120.66376 * 180.02562 * 11 10 9 32 32 H 1.07994 * 120.25680 * 180.24743 * 12 11 10 33 33 H 0.97003 * 119.99821 * 354.39821 * 14 13 12 34 34 H 1.08998 * 109.67359 * 291.29497 * 19 17 15 35 35 H 1.08999 * 109.67639 * 51.78705 * 19 17 15 36 36 H 1.09007 * 109.68875 * 49.82012 * 20 19 17 37 37 H 1.09006 * 109.69028 * 170.35204 * 20 19 17 38 38 H 1.08994 * 109.25955 * 171.08143 * 21 20 19 39 39 H 1.09001 * 109.25757 * 290.52876 * 21 20 19 40 40 H 1.08005 * 120.56447 * 359.81180 * 23 22 21 41 41 H 1.07992 * 120.58501 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.69452 * 180.10889 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3007 -2.4367 0.0005 10 6 2.0082 -3.6519 0.0016 11 6 1.3029 -4.8415 0.0011 12 6 -0.0833 -4.7933 0.0050 13 6 -0.7281 -3.5548 -0.0009 14 7 -2.1198 -3.5045 -0.0014 15 6 -2.7513 -2.3182 0.1012 16 8 -2.1105 -1.2886 0.1060 17 6 -4.2537 -2.2713 0.2100 18 1 -4.5661 -2.8091 1.1051 19 6 -4.7059 -0.8163 0.3136 20 6 -6.2351 -0.7755 0.2096 21 6 -6.6295 -1.1328 -1.2224 22 6 -5.9534 -2.4059 -1.6547 23 6 -6.4646 -3.0723 -2.7645 24 6 -5.8544 -4.2428 -3.1810 25 6 -4.7577 -4.7089 -2.4802 26 7 -4.3028 -4.0531 -1.4350 27 6 -4.8607 -2.9295 -1.0025 28 7 -0.0358 -2.4317 -0.0004 29 1 -0.4850 0.8401 -0.0004 30 1 3.0883 -3.6561 0.0020 31 1 1.8211 -5.7891 0.0023 32 1 -0.6595 -5.7067 0.0087 33 1 -2.6347 -4.3229 -0.0797 34 1 -4.3920 -0.4018 1.2716 35 1 -4.2668 -0.2367 -0.4984 36 1 -6.6696 -1.4974 0.9012 37 1 -6.5931 0.2255 0.4508 38 1 -7.7103 -1.2638 -1.2755 39 1 -6.3327 -0.3237 -1.8896 40 1 -7.3228 -2.6827 -3.2920 41 1 -6.2284 -4.7824 -4.0383 42 1 -4.2699 -5.6199 -2.7942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:59 Heat of formation + Delta-G solvation = 52.551490 kcal Electronic energy + Delta-G solvation = -27226.892718 eV Core-core repulsion = 23558.252848 eV Total energy + Delta-G solvation = -3668.639870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88884 -38.94737 -37.52014 -36.19414 -33.92670 -33.37055 -32.77057 -30.50095 -30.22682 -29.95776 -28.69582 -25.51825 -24.62966 -23.25135 -23.23730 -21.69630 -20.95186 -19.90597 -19.06727 -17.62707 -16.77680 -16.55486 -16.11975 -15.86673 -15.46306 -14.61919 -14.40666 -14.35064 -14.23412 -13.74779 -13.55931 -13.42605 -13.17492 -12.95754 -12.79520 -12.61657 -12.35106 -11.95222 -11.84633 -11.58726 -11.09766 -11.08539 -10.86439 -10.84134 -10.56047 -10.53546 -10.38340 -9.83446 -9.74829 -9.54242 -9.39842 -9.04427 -8.88026 -8.57063 -7.84585 -7.07800 -6.78015 -6.04020 -4.30226 1.06387 1.21432 2.87383 3.14714 3.21890 3.25619 3.34934 3.64925 3.85569 4.10094 4.13003 4.25424 4.56067 4.68014 4.79465 4.88493 4.96271 5.03091 5.11090 5.17101 5.42934 5.46916 5.54925 5.63665 5.70774 5.75902 5.85308 5.97187 6.09430 6.16044 6.19233 6.23000 6.29177 6.48310 6.62885 6.66103 6.85582 6.94613 7.03177 7.33965 7.68909 7.79779 7.92697 7.97661 8.22590 8.33869 8.67551 8.85440 9.16494 9.46492 10.37840 10.57999 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.004529 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.478973 B = 6180.457477 C = 7605.497280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.429 4.429 8 H 0.081 0.919 9 C 0.272 3.728 10 C -0.308 4.308 11 C -0.037 4.037 12 C -0.355 4.355 13 C 0.374 3.626 14 N -0.651 5.651 15 C 0.485 3.515 16 O -0.412 6.412 17 C -0.060 4.060 18 H 0.105 0.895 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.077 4.077 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.178 4.178 25 C 0.107 3.893 26 N -0.483 5.483 27 C 0.148 3.852 28 N -0.474 5.474 29 H 0.270 0.730 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.866 -3.558 -3.038 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.170 4.170 3 Si 0.718 3.282 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.062 4.062 12 C -0.380 4.380 13 C 0.135 3.865 14 N -0.300 5.300 15 C 0.265 3.735 16 O -0.276 6.276 17 C -0.082 4.082 18 H 0.123 0.877 19 C -0.137 4.137 20 C -0.158 4.158 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.198 4.198 25 C -0.052 4.052 26 N -0.192 5.192 27 C 0.013 3.987 28 N -0.194 5.194 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.247 0.753 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.344 -2.104 -2.562 16.677 hybrid contribution -0.204 -0.534 -0.723 0.921 sum -16.548 -2.637 -3.284 17.076 Atomic orbital electron populations 1.70360 1.05655 1.27019 1.24373 1.26168 0.95098 1.00441 0.95288 0.86503 0.80953 0.82478 0.78270 1.18669 1.20182 1.20110 1.19580 0.93982 0.89395 1.43020 0.90086 1.18412 0.87334 0.91905 0.87726 1.21604 0.98423 0.93601 1.19482 1.20551 0.93219 0.96431 0.95979 1.20515 0.94683 0.95144 1.27687 1.18719 0.83782 0.90768 0.93218 1.43544 1.04541 1.09904 1.71962 1.20222 0.87979 0.85242 0.80061 1.91136 1.64754 1.31102 1.40597 1.20348 0.94713 0.97735 0.95416 0.87712 1.21383 0.94227 0.93643 1.04437 1.21607 0.96424 1.01961 0.95783 1.20440 0.99312 0.94051 0.97628 1.20413 0.97096 0.98274 0.96617 1.21552 0.99181 0.94536 0.95164 1.22074 0.98266 0.97761 1.01727 1.22660 0.93151 0.98595 0.90805 1.67312 1.29677 1.07717 1.14486 1.20725 0.91374 0.91145 0.95505 1.68738 1.06876 1.23318 1.20437 0.91833 0.88745 0.88799 0.89174 0.75325 0.90097 0.90156 0.91623 0.90819 0.90740 0.90231 0.85055 0.84911 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.55 8.99 55.55 0.50 -18.05 16 2 C 0.06 1.59 5.50 -17.34 -0.10 1.49 16 3 Si 0.89 19.72 29.56 -169.99 -5.02 14.70 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.43 -12.18 9.14 -37.73 -0.34 -12.53 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.27 7.93 6.55 -85.00 -0.56 7.37 16 10 C -0.31 -8.09 9.83 -38.66 -0.38 -8.47 16 11 C -0.04 -0.90 10.15 -39.39 -0.40 -1.30 16 12 C -0.35 -8.50 9.96 -38.89 -0.39 -8.88 16 13 C 0.37 9.70 7.43 -154.97 -1.15 8.55 16 14 N -0.65 -14.20 4.90 -11.40 -0.06 -14.26 16 15 C 0.48 10.39 7.02 -10.98 -0.08 10.31 16 16 O -0.41 -10.58 11.60 5.56 0.06 -10.52 16 17 C -0.06 -0.94 2.72 -93.05 -0.25 -1.19 16 18 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 19 C -0.10 -1.37 4.65 -26.70 -0.12 -1.50 16 20 C -0.12 -1.20 5.98 -26.68 -0.16 -1.36 16 21 C -0.08 -0.74 5.68 -28.10 -0.16 -0.90 16 22 C -0.12 -1.48 5.74 -104.60 -0.60 -2.08 16 23 C -0.08 -0.81 9.75 -39.17 -0.38 -1.19 16 24 C -0.18 -1.82 10.12 -39.52 -0.40 -2.22 16 25 C 0.11 1.32 11.19 -17.69 -0.20 1.12 16 26 N -0.48 -7.33 7.44 -9.51 -0.07 -7.40 16 27 C 0.15 2.18 6.20 -82.44 -0.51 1.67 16 28 N -0.47 -13.86 5.74 -10.25 -0.06 -13.92 16 29 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 30 H 0.09 2.30 8.06 -52.48 -0.42 1.88 16 31 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 32 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.41 7.74 6.79 -40.82 -0.28 7.46 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.29 7.78 -51.93 -0.40 0.89 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -34.39 345.01 -10.92 -45.31 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.30 Total: 10.02 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -6.18 Total: -11.10 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.31 Total: -53.62 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.06 Total: -10.52 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.39 -10.92 -45.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.866 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds