Wall clock time and date at job start Tue Mar 31 2020 14:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00048 * 3 2 1 5 5 H 1.48500 * 109.46780 * 30.00208 * 3 2 1 6 6 H 1.48504 * 109.47004 * 149.99731 * 3 2 1 7 7 C 1.37873 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99962 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00039 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.49635 * 59.92115 * 9 7 2 11 11 C 1.53117 * 109.50103 * 299.80340 * 9 7 2 12 12 C 1.53120 * 109.15499 * 182.40333 * 11 9 7 13 13 C 1.53035 * 109.28250 * 57.65817 * 12 11 9 14 14 N 1.46848 * 109.51736 * 300.81886 * 13 12 11 15 15 C 1.37718 * 111.00022 * 185.83902 * 14 13 12 16 16 C 1.38154 * 120.64581 * 235.81679 * 15 14 13 17 17 C 1.39260 * 119.01683 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.78336 * 180.02562 * 17 16 15 19 19 F 1.39908 * 109.47089 * 209.97822 * 18 17 16 20 20 F 1.39904 * 109.46816 * 329.97184 * 18 17 16 21 21 N 1.31652 * 120.43276 * 359.97430 * 17 16 15 22 22 C 1.33793 * 121.22469 * 0.02562 * 21 17 16 23 23 N 1.32865 * 132.41484 * 180.33930 * 22 21 17 24 24 C 1.32725 * 109.73923 * 180.12199 * 23 22 21 25 25 N 1.31070 * 109.62511 * 359.55496 * 24 23 22 26 26 N 1.36512 * 120.64213 * 55.78336 * 15 14 13 27 27 C 1.46850 * 111.20262 * 61.74049 * 14 13 12 28 28 H 0.97002 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.52233 * 302.30676 * 11 9 7 30 30 H 1.09000 * 109.52449 * 62.50043 * 11 9 7 31 31 H 1.09002 * 109.50188 * 177.59545 * 12 11 9 32 32 H 1.08996 * 109.50701 * 297.71126 * 12 11 9 33 33 H 1.08990 * 109.46397 * 180.80423 * 13 12 11 34 34 H 1.09001 * 109.46236 * 60.82880 * 13 12 11 35 35 H 1.08000 * 120.49395 * 359.97438 * 16 15 14 36 36 H 1.08995 * 109.47705 * 89.97375 * 18 17 16 37 37 H 1.08002 * 125.18942 * 179.82416 * 24 23 22 38 38 H 1.09001 * 109.45700 * 58.27308 * 27 14 13 39 39 H 1.08999 * 109.46005 * 178.24175 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8757 -0.6793 0.8880 11 6 4.0222 -0.4764 -1.2536 12 6 5.5522 -0.5335 -1.2767 13 6 6.0040 -1.9952 -1.2403 14 7 5.4907 -2.6372 -0.0234 15 6 5.9857 -3.9158 0.1064 16 6 5.1298 -4.9927 0.2341 17 6 5.6671 -6.2709 0.3638 18 6 4.7493 -7.4580 0.5036 19 9 5.3804 -8.4483 1.2641 20 9 3.5686 -7.0620 1.1412 21 7 6.9714 -6.4491 0.3641 22 6 7.8127 -5.4160 0.2413 23 7 9.1387 -5.3390 0.2081 24 6 9.5109 -4.0723 0.0728 25 7 8.4495 -3.3063 0.0059 26 7 7.3317 -4.1437 0.1107 27 6 4.0224 -2.6366 -0.0016 28 1 -0.4850 0.8401 0.0004 29 1 3.6259 -0.9679 -2.1420 30 1 3.6967 0.5637 -1.2357 31 1 5.9202 -0.0615 -2.1877 32 1 5.9492 -0.0081 -0.4081 33 1 7.0930 -2.0388 -1.2422 34 1 5.6182 -2.5165 -2.1163 35 1 4.0599 -4.8454 0.2341 36 1 4.5137 -7.8535 -0.4844 37 1 10.5326 -3.7259 0.0209 38 1 3.6459 -3.1550 -0.8834 39 1 3.6724 -3.1462 0.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882577208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:32 Heat of formation + Delta-G solvation = 59.921729 kcal Electronic energy + Delta-G solvation = -27777.192755 eV Core-core repulsion = 23586.935704 eV Total energy + Delta-G solvation = -4190.257051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.27328 -47.27129 -43.11043 -40.10560 -38.44130 -35.41043 -33.22866 -32.57933 -31.77674 -30.88430 -29.96830 -27.69711 -25.84584 -25.04801 -23.73504 -22.88766 -21.81667 -21.43171 -19.53944 -18.74088 -18.37039 -17.86179 -17.68523 -17.05579 -16.80524 -16.67869 -15.97023 -15.11849 -14.93193 -14.72424 -14.52577 -14.17949 -14.00917 -13.77800 -13.58794 -13.40444 -13.21511 -12.92511 -12.73506 -12.67893 -12.54397 -12.05256 -11.75556 -11.52933 -11.34952 -10.91828 -10.44196 -10.34218 -10.30039 -10.26611 -10.15876 -9.92564 -9.56800 -9.47216 -9.21140 -8.72581 -8.30191 -6.26366 -4.28773 0.11262 0.49853 1.53638 2.33746 2.62372 3.07353 3.12864 3.17484 3.25903 3.27349 3.54576 3.74686 4.02872 4.23847 4.32432 4.50154 4.56711 4.81157 4.87236 4.98427 5.01825 5.16103 5.18038 5.38780 5.44537 5.53557 5.75108 5.79812 5.86814 5.89792 6.02421 6.08675 6.16584 6.38184 6.40183 6.67370 6.75649 6.83336 7.19288 7.23328 7.51074 7.73801 8.26094 8.74064 9.34128 10.86049 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.004412 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.687782 B = 6345.404167 C = 8113.297345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.040 0.960 11 C -0.129 4.129 12 C -0.120 4.120 13 C 0.059 3.941 14 N -0.473 5.473 15 C 0.425 3.575 16 C -0.279 4.279 17 C 0.182 3.818 18 C 0.333 3.667 19 F -0.180 7.180 20 F -0.181 7.181 21 N -0.464 5.464 22 C 0.469 3.531 23 N -0.530 5.530 24 C 0.250 3.750 25 N -0.330 5.330 26 N -0.333 5.333 27 C 0.067 3.933 28 H 0.267 0.733 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.187 0.813 36 H 0.144 0.856 37 H 0.232 0.768 38 H 0.062 0.938 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.025 -9.481 -3.213 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.002 3.998 10 H 0.058 0.942 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.065 4.065 14 N -0.184 5.184 15 C 0.203 3.797 16 C -0.311 4.311 17 C 0.019 3.981 18 C 0.278 3.722 19 F -0.161 7.161 20 F -0.162 7.162 21 N -0.183 5.183 22 C 0.108 3.892 23 N -0.263 5.263 24 C -0.052 4.052 25 N -0.160 5.160 26 N -0.117 5.117 27 C -0.058 4.058 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.204 0.796 36 H 0.161 0.839 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.944 -9.230 -2.805 16.143 hybrid contribution -0.249 1.414 -0.319 1.471 sum 12.696 -7.816 -3.124 15.232 Atomic orbital electron populations 1.69871 1.06264 1.27280 1.49596 1.24932 0.94667 0.98978 0.94048 0.86889 0.80050 0.83629 0.78032 1.20457 1.22250 1.18909 1.20813 0.87782 0.94910 1.52514 0.90395 1.19228 0.96897 0.89312 0.94346 0.94153 1.22144 0.92133 1.01198 1.01167 1.21714 0.98440 0.93464 1.02187 1.22419 1.01225 0.96401 0.86425 1.57938 1.13812 1.10159 1.36522 1.19388 0.79555 0.91314 0.89456 1.21795 1.02747 0.89173 1.17355 1.22044 0.90501 0.94741 0.90832 1.20015 0.77177 0.82024 0.92952 1.93075 1.82433 1.61990 1.78607 1.93090 1.47284 1.91263 1.84596 1.67493 1.01940 1.28007 1.20872 1.22581 0.91188 0.79867 0.95579 1.70957 1.04719 1.20394 1.30266 1.26329 0.99774 0.86024 0.93026 1.78496 0.90740 1.14508 1.32256 1.48867 1.05465 1.09888 1.47461 1.22738 0.78053 1.02515 1.02457 0.92347 0.91783 0.92626 0.91292 0.91135 0.88732 0.92883 0.79592 0.83945 0.75186 0.91932 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.96 55.43 0.77 -24.66 16 2 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.88 20.31 24.36 -169.99 -4.14 16.17 16 4 H -0.28 -6.18 6.89 56.52 0.39 -5.80 16 5 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16 7 C -0.52 -12.97 9.14 -34.44 -0.31 -13.29 16 8 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.02 0.44 1.85 -91.69 -0.17 0.27 16 10 H 0.04 0.89 7.20 -51.93 -0.37 0.51 16 11 C -0.13 -2.40 4.74 -26.61 -0.13 -2.53 16 12 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 13 C 0.06 0.85 5.32 -3.83 -0.02 0.83 16 14 N -0.47 -7.38 4.70 -172.76 -0.81 -8.19 16 15 C 0.43 6.28 6.50 -152.98 -0.99 5.29 16 16 C -0.28 -3.55 8.19 -39.23 -0.32 -3.87 16 17 C 0.18 2.24 6.61 -82.29 -0.54 1.69 16 18 C 0.33 3.14 5.73 36.00 0.21 3.34 16 19 F -0.18 -2.08 17.06 2.25 0.04 -2.04 16 20 F -0.18 -1.91 16.49 2.25 0.04 -1.88 16 21 N -0.46 -6.90 10.08 -10.18 -0.10 -7.00 16 22 C 0.47 7.44 9.00 -323.15 -2.91 4.53 16 23 N -0.53 -8.09 11.26 -15.66 -0.18 -8.26 16 24 C 0.25 3.11 12.98 -91.97 -1.19 1.92 16 25 N -0.33 -4.82 10.85 29.26 0.32 -4.50 16 26 N -0.33 -5.15 3.74 -12.98 -0.05 -5.20 16 27 C 0.07 1.10 3.37 -3.84 -0.01 1.09 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.13 3.37 -51.93 -0.17 0.95 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.36 6.00 -51.93 -0.31 1.05 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.19 2.10 5.44 -52.49 -0.29 1.82 16 36 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.23 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 39 H 0.09 1.46 6.98 -51.93 -0.36 1.10 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -31.11 319.77 -10.00 -41.11 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.05 Total: 0.43 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -6.66 Total: -0.78 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.05 Total: -57.83 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.14 Total: 16.17 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.11 -10.00 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882577208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.028 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds