Wall clock time and date at job start Tue Mar 31 2020 14:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86803 * 120.00188 * 2 1 4 4 H 1.48502 * 109.46947 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47405 * 119.99765 * 3 2 1 6 6 H 1.48498 * 109.47099 * 239.99972 * 3 2 1 7 7 C 1.38638 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00571 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99543 * 174.93149 * 9 7 2 11 11 C 1.38733 * 120.08952 * 5.62834 * 10 9 7 12 12 C 1.38343 * 119.97674 * 179.97438 * 11 10 9 13 13 F 1.35096 * 119.92765 * 180.02562 * 12 11 10 14 14 C 1.38548 * 120.15110 * 359.97438 * 12 11 10 15 15 C 1.38196 * 120.17601 * 0.02562 * 14 12 11 16 16 C 1.38702 * 120.01866 * 359.74752 * 15 14 12 17 17 N 1.40139 * 120.07202 * 180.27367 * 16 15 14 18 18 C 1.34776 * 120.00000 * 34.13325 * 17 16 15 19 19 O 1.21588 * 120.00065 * 355.25930 * 18 17 16 20 20 N 1.34771 * 119.99814 * 175.25409 * 18 17 16 21 21 C 1.47430 * 125.64942 * 4.71278 * 20 18 17 22 22 C 1.55130 * 104.72214 * 155.81053 * 21 20 18 23 23 C 1.55160 * 101.48313 * 37.29851 * 22 21 20 24 24 C 1.47024 * 125.65054 * 185.01643 * 20 18 17 25 25 H 1.09000 * 109.87900 * 300.44557 * 24 20 18 26 26 C 1.52999 * 109.88257 * 61.45373 * 24 20 18 27 27 N 1.46897 * 109.47188 * 185.27075 * 26 24 20 28 28 H 0.97005 * 119.99689 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.01250 * 359.95067 * 11 10 9 30 30 H 1.07997 * 119.91425 * 180.02562 * 14 12 11 31 31 H 1.08003 * 119.99302 * 179.97438 * 15 14 12 32 32 H 0.96996 * 119.99765 * 214.12265 * 17 16 15 33 33 H 1.08993 * 110.36634 * 274.74447 * 21 20 18 34 34 H 1.08998 * 110.36757 * 37.06532 * 21 20 18 35 35 H 1.08997 * 111.19460 * 279.19147 * 22 21 20 36 36 H 1.09005 * 110.93724 * 155.28685 * 22 21 20 37 37 H 1.09009 * 110.71711 * 205.96626 * 23 22 21 38 38 H 1.09004 * 110.87727 * 82.76577 * 23 22 21 39 39 H 1.09001 * 109.46862 * 305.26695 * 26 24 20 40 40 H 1.09001 * 109.47101 * 65.26489 * 26 24 20 41 41 H 1.00903 * 111.00366 * 61.10216 * 27 26 24 42 42 H 1.00905 * 110.99766 * 185.05872 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2848 2.7465 -0.0006 5 1 3.1035 1.6965 1.2125 6 1 3.1035 1.6964 -1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1048 11 6 3.4561 -3.4400 -0.0908 12 6 4.2031 -4.5994 -0.1988 13 9 5.5525 -4.5355 -0.1845 14 6 3.5706 -5.8260 -0.3206 15 6 2.1905 -5.8975 -0.3353 16 6 1.4345 -4.7401 -0.2227 17 7 0.0350 -4.8119 -0.2317 18 6 -0.5890 -5.8706 0.3216 19 8 0.0617 -6.8036 0.7512 20 7 -1.9343 -5.8952 0.3987 21 6 -2.8460 -4.8839 -0.1667 22 6 -4.1884 -5.6339 -0.3715 23 6 -4.2203 -6.5563 0.8757 24 6 -2.7356 -6.9315 1.0662 25 1 -2.5375 -7.9027 0.6125 26 6 -2.3935 -6.9743 2.5568 27 7 -3.1036 -8.0933 3.1903 28 1 -0.4850 -0.8401 0.0004 29 1 3.9515 -2.4851 0.0040 30 1 4.1575 -6.7287 -0.4043 31 1 1.7005 -6.8552 -0.4307 32 1 -0.4845 -4.0995 -0.6360 33 1 -2.9738 -4.0561 0.5307 34 1 -2.4651 -4.5213 -1.1215 35 1 -4.1763 -6.2198 -1.2906 36 1 -5.0280 -4.9387 -0.3649 37 1 -4.8211 -7.4452 0.6827 38 1 -4.5972 -6.0195 1.7463 39 1 -1.3189 -7.1100 2.6791 40 1 -2.6973 -6.0387 3.0263 41 1 -2.8255 -8.9743 2.7845 42 1 -2.9597 -8.0938 4.1891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886936980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:41 Heat of formation + Delta-G solvation = -70.618598 kcal Electronic energy + Delta-G solvation = -27695.098361 eV Core-core repulsion = 23590.348210 eV Total energy + Delta-G solvation = -4104.750151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.30386 -40.61733 -39.28178 -37.82374 -36.34996 -34.68575 -33.92363 -32.42548 -31.60103 -29.46616 -29.16503 -27.99644 -25.14608 -24.70576 -23.01441 -22.22711 -21.75683 -20.85669 -19.48921 -18.72787 -18.36062 -17.42732 -16.85990 -16.21863 -15.92843 -15.67960 -15.09668 -14.98166 -14.84566 -14.69016 -14.33720 -13.97740 -13.92555 -13.90707 -13.77806 -13.55353 -13.12369 -12.96109 -12.55349 -12.36904 -12.29717 -11.77955 -11.39379 -11.31368 -11.16850 -10.94934 -10.87044 -10.81896 -10.78015 -10.37492 -9.93212 -9.83978 -9.50837 -8.91555 -8.89582 -8.60077 -7.93994 -7.18610 -6.93362 -4.22610 1.77759 2.05299 2.63687 3.17627 3.21168 3.33913 3.37914 3.95988 4.04282 4.29327 4.40981 4.53959 4.58183 4.73898 4.77401 4.98243 5.01900 5.03430 5.21512 5.29121 5.49438 5.52590 5.59483 5.64968 5.68365 5.80172 5.80552 5.90594 5.98147 6.07126 6.14508 6.31563 6.49588 6.68114 6.83264 6.86239 6.91087 7.03074 7.20787 7.23368 7.37548 7.56852 8.10355 8.20983 8.70521 8.76401 9.35825 10.49731 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.004276 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.460279 B = 6546.762886 C = 8542.533966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 1.094 2.906 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.471 4.471 8 H 0.086 0.914 9 O -0.193 6.193 10 C 0.160 3.840 11 C -0.254 4.254 12 C 0.128 3.872 13 F -0.150 7.150 14 C -0.226 4.226 15 C -0.051 4.051 16 C 0.075 3.925 17 N -0.664 5.664 18 C 0.723 3.277 19 O -0.582 6.582 20 N -0.633 5.633 21 C 0.095 3.905 22 C -0.133 4.133 23 C -0.112 4.112 24 C 0.162 3.838 25 H 0.072 0.928 26 C 0.047 3.953 27 N -0.846 5.846 28 H 0.280 0.720 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.408 0.592 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.340 0.660 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -10.692 0.200 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.191 4.191 3 Si 0.918 3.082 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.547 4.547 8 H 0.104 0.896 9 O -0.097 6.097 10 C 0.104 3.896 11 C -0.275 4.275 12 C 0.108 3.892 13 F -0.129 7.129 14 C -0.247 4.247 15 C -0.071 4.071 16 C -0.020 4.020 17 N -0.310 5.310 18 C 0.426 3.574 19 O -0.460 6.460 20 N -0.372 5.372 21 C -0.028 4.028 22 C -0.171 4.171 23 C -0.150 4.150 24 C 0.058 3.942 25 H 0.090 0.910 26 C -0.085 4.085 27 N -0.375 5.375 28 H 0.090 0.910 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.243 0.757 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.151 0.849 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.747 -9.248 0.262 12.067 hybrid contribution 1.392 -1.521 0.169 2.068 sum -6.356 -10.768 0.430 12.512 Atomic orbital electron populations 1.70624 1.06511 1.31411 1.42077 1.26559 0.96773 1.01072 0.94681 0.83120 0.74575 0.73208 0.77326 1.19684 1.20600 1.20568 1.22246 0.93316 0.81827 1.57300 0.89624 1.83624 1.35096 1.12037 1.78904 1.18639 0.89473 0.86565 0.94876 1.20848 0.93315 0.98533 1.14787 1.17453 0.75997 0.94284 1.01427 1.91413 1.30061 1.97372 1.94080 1.20507 0.94605 0.95862 1.13706 1.20698 0.92139 0.97444 0.96848 1.16679 0.81158 0.91662 1.12489 1.42208 1.05158 1.23393 1.60283 1.15378 0.80200 0.83131 0.78737 1.90856 1.63675 1.36567 1.54908 1.47579 1.03319 1.27010 1.59246 1.22396 0.89881 0.91653 0.98857 1.22831 0.96663 0.98908 0.98741 1.22567 0.94208 1.00151 0.98104 1.21258 0.90068 0.91132 0.91777 0.91037 1.22166 0.97255 0.94825 0.94254 1.58667 1.63995 1.06135 1.08747 0.91016 0.83840 0.85853 0.83848 0.75654 0.90939 0.90713 0.90635 0.89706 0.89967 0.90205 0.93619 0.91024 0.84867 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.26 13.70 55.48 0.76 -23.50 16 2 C 0.02 0.40 5.49 -17.52 -0.10 0.30 16 3 Si 1.09 22.65 29.92 -169.99 -5.09 17.56 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.53 9.49 30.88 0.29 -12.23 16 8 H 0.09 2.18 5.21 -52.49 -0.27 1.91 16 9 O -0.19 -4.99 8.71 0.01 0.00 -4.99 16 10 C 0.16 3.73 6.66 -38.94 -0.26 3.47 16 11 C -0.25 -5.64 9.14 -39.36 -0.36 -6.00 16 12 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 13 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 14 C -0.23 -4.27 10.02 -39.48 -0.40 -4.66 16 15 C -0.05 -0.99 8.70 -39.43 -0.34 -1.34 16 16 C 0.07 1.58 6.34 -83.43 -0.53 1.05 16 17 N -0.66 -12.46 5.16 -14.07 -0.07 -12.54 16 18 C 0.72 12.93 8.06 -86.92 -0.70 12.23 16 19 O -0.58 -11.68 12.88 5.29 0.07 -11.61 16 20 N -0.63 -8.97 3.06 -168.56 -0.52 -9.48 16 21 C 0.10 1.11 6.53 -2.41 -0.02 1.09 16 22 C -0.13 -1.17 7.10 -24.46 -0.17 -1.34 16 23 C -0.11 -1.04 6.30 -24.90 -0.16 -1.20 16 24 C 0.16 1.95 3.06 -66.96 -0.20 1.75 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 C 0.05 0.58 6.18 -3.83 -0.02 0.55 16 27 N -0.85 -8.10 9.41 -10.37 -0.10 -8.19 16 28 H 0.28 7.79 7.97 -40.82 -0.33 7.47 16 29 H 0.14 3.21 5.64 -52.49 -0.30 2.92 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.14 2.74 6.14 -52.48 -0.32 2.42 16 32 H 0.41 7.29 7.10 -40.82 -0.29 7.00 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.85 7.41 -51.93 -0.38 0.46 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.08 0.75 7.77 -51.93 -0.40 0.35 16 39 H 0.05 0.70 6.86 -51.93 -0.36 0.34 16 40 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 41 H 0.34 2.96 9.05 -39.29 -0.36 2.60 16 42 H 0.34 2.85 9.08 -39.29 -0.36 2.50 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -30.18 350.79 -7.98 -38.16 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.11 Total: 16.20 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -3.25 Total: -4.02 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.07 Total: -53.71 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.07 Total: -16.60 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.09 Total: 17.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.18 -7.98 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886936980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.457 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds