Wall clock time and date at job start Tue Mar 31 2020 14:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86803 * 120.00188 * 2 1 4 4 H 1.48502 * 109.46947 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47405 * 119.99765 * 3 2 1 6 6 H 1.48498 * 109.47099 * 239.99972 * 3 2 1 7 7 C 1.38638 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00571 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99543 * 174.93149 * 9 7 2 11 11 C 1.38733 * 120.08952 * 5.62834 * 10 9 7 12 12 C 1.38343 * 119.97674 * 179.97438 * 11 10 9 13 13 F 1.35096 * 119.92765 * 180.02562 * 12 11 10 14 14 C 1.38548 * 120.15110 * 359.97438 * 12 11 10 15 15 C 1.38196 * 120.17601 * 0.02562 * 14 12 11 16 16 C 1.38702 * 120.01866 * 359.74752 * 15 14 12 17 17 N 1.40139 * 120.07202 * 180.27367 * 16 15 14 18 18 C 1.34776 * 120.00000 * 34.13325 * 17 16 15 19 19 O 1.21588 * 120.00065 * 355.25930 * 18 17 16 20 20 N 1.34771 * 119.99814 * 175.25409 * 18 17 16 21 21 C 1.47430 * 125.64942 * 4.71278 * 20 18 17 22 22 C 1.55130 * 104.72214 * 155.81053 * 21 20 18 23 23 C 1.55160 * 101.48313 * 37.29851 * 22 21 20 24 24 C 1.47024 * 125.65054 * 185.01643 * 20 18 17 25 25 H 1.09000 * 109.87900 * 300.44557 * 24 20 18 26 26 C 1.52999 * 109.88257 * 61.45373 * 24 20 18 27 27 N 1.46897 * 109.47188 * 185.27075 * 26 24 20 28 28 H 0.97005 * 119.99689 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.01250 * 359.95067 * 11 10 9 30 30 H 1.07997 * 119.91425 * 180.02562 * 14 12 11 31 31 H 1.08003 * 119.99302 * 179.97438 * 15 14 12 32 32 H 0.96996 * 119.99765 * 214.12265 * 17 16 15 33 33 H 1.08993 * 110.36634 * 274.74447 * 21 20 18 34 34 H 1.08998 * 110.36757 * 37.06532 * 21 20 18 35 35 H 1.08997 * 111.19460 * 279.19147 * 22 21 20 36 36 H 1.09005 * 110.93724 * 155.28685 * 22 21 20 37 37 H 1.09009 * 110.71711 * 205.96626 * 23 22 21 38 38 H 1.09004 * 110.87727 * 82.76577 * 23 22 21 39 39 H 1.09001 * 109.46862 * 305.26695 * 26 24 20 40 40 H 1.09001 * 109.47101 * 65.26489 * 26 24 20 41 41 H 1.00903 * 111.00366 * 61.10216 * 27 26 24 42 42 H 1.00905 * 110.99766 * 185.05872 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2848 2.7465 -0.0006 5 1 3.1035 1.6965 1.2125 6 1 3.1035 1.6964 -1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0703 -3.5045 -0.1048 11 6 3.4561 -3.4400 -0.0908 12 6 4.2031 -4.5994 -0.1988 13 9 5.5525 -4.5355 -0.1845 14 6 3.5706 -5.8260 -0.3206 15 6 2.1905 -5.8975 -0.3353 16 6 1.4345 -4.7401 -0.2227 17 7 0.0350 -4.8119 -0.2317 18 6 -0.5890 -5.8706 0.3216 19 8 0.0617 -6.8036 0.7512 20 7 -1.9343 -5.8952 0.3987 21 6 -2.8460 -4.8839 -0.1667 22 6 -4.1884 -5.6339 -0.3715 23 6 -4.2203 -6.5563 0.8757 24 6 -2.7356 -6.9315 1.0662 25 1 -2.5375 -7.9027 0.6125 26 6 -2.3935 -6.9743 2.5568 27 7 -3.1036 -8.0933 3.1903 28 1 -0.4850 -0.8401 0.0004 29 1 3.9515 -2.4851 0.0040 30 1 4.1575 -6.7287 -0.4043 31 1 1.7005 -6.8552 -0.4307 32 1 -0.4845 -4.0995 -0.6360 33 1 -2.9738 -4.0561 0.5307 34 1 -2.4651 -4.5213 -1.1215 35 1 -4.1763 -6.2198 -1.2906 36 1 -5.0280 -4.9387 -0.3649 37 1 -4.8211 -7.4452 0.6827 38 1 -4.5972 -6.0195 1.7463 39 1 -1.3189 -7.1100 2.6791 40 1 -2.6973 -6.0387 3.0263 41 1 -2.8255 -8.9743 2.7845 42 1 -2.9597 -8.0938 4.1891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886936980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:40 Heat of formation + Delta-G solvation = -91.019656 kcal Electronic energy + Delta-G solvation = -27695.983017 eV Core-core repulsion = 23590.348210 eV Total energy + Delta-G solvation = -4105.634807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.90742 -42.01937 -40.83735 -39.17906 -37.99786 -35.92537 -35.15263 -34.35504 -32.69671 -31.14447 -30.22267 -29.46277 -27.06680 -25.73909 -24.35796 -23.78574 -23.09340 -21.94831 -20.84233 -20.52775 -19.75013 -19.02365 -18.29371 -17.56899 -17.24570 -17.02154 -16.71171 -16.63727 -16.09677 -15.87087 -15.69625 -15.59290 -15.54563 -15.44870 -15.15259 -14.81344 -14.17686 -14.14256 -14.04776 -13.83419 -13.39499 -13.07329 -12.72593 -12.68604 -12.54089 -12.42738 -12.15431 -12.02606 -11.94751 -11.68694 -11.65440 -11.41291 -11.10285 -10.79709 -9.94295 -9.67655 -9.62287 -8.97494 -8.84633 -6.27529 0.10429 0.35911 1.34641 1.50438 1.60255 1.78625 1.90642 2.28634 2.61004 2.73449 2.98590 3.05079 3.33960 3.51713 3.63541 3.69695 3.84317 3.91464 4.07592 4.12792 4.25619 4.28650 4.37686 4.44896 4.57411 4.68361 4.76215 4.84163 4.94928 4.99107 5.02048 5.10697 5.11395 5.20336 5.28781 5.36097 5.37539 5.50851 5.83755 5.91262 6.06533 6.19743 6.48708 6.71485 6.77959 7.30633 7.46536 8.47368 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.004276 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.460279 B = 6546.762886 C = 8542.533966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.030 4.030 3 Si 1.139 2.861 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.491 4.491 8 H 0.089 0.911 9 O -0.223 6.223 10 C 0.133 3.867 11 C -0.260 4.260 12 C 0.123 3.877 13 F -0.142 7.142 14 C -0.199 4.199 15 C -0.051 4.051 16 C 0.077 3.923 17 N -0.666 5.666 18 C 0.718 3.282 19 O -0.607 6.607 20 N -0.628 5.628 21 C 0.085 3.915 22 C -0.120 4.120 23 C -0.102 4.102 24 C 0.156 3.844 25 H 0.070 0.930 26 C 0.056 3.944 27 N -0.835 5.835 28 H 0.265 0.735 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.010 0.990 40 H 0.064 0.936 41 H 0.347 0.653 42 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -12.064 -0.092 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.229 4.229 3 Si 0.955 3.045 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.107 0.893 9 O -0.129 6.129 10 C 0.080 3.920 11 C -0.281 4.281 12 C 0.103 3.897 13 F -0.121 7.121 14 C -0.219 4.219 15 C -0.072 4.072 16 C -0.018 4.018 17 N -0.313 5.313 18 C 0.420 3.580 19 O -0.487 6.487 20 N -0.366 5.366 21 C -0.037 4.037 22 C -0.158 4.158 23 C -0.139 4.139 24 C 0.052 3.948 25 H 0.088 0.912 26 C -0.076 4.076 27 N -0.365 5.365 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.178 0.822 31 H 0.171 0.829 32 H 0.245 0.755 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.160 0.840 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.093 -10.678 -0.028 13.398 hybrid contribution 1.544 -1.386 0.272 2.093 sum -6.549 -12.064 0.244 13.729 Atomic orbital electron populations 1.70730 1.07423 1.30379 1.45245 1.28145 0.96904 1.04232 0.93594 0.82626 0.73890 0.69348 0.78593 1.19624 1.19004 1.18666 1.22556 0.93725 0.82607 1.57726 0.89341 1.83614 1.35627 1.12423 1.81252 1.19000 0.90143 0.86752 0.96091 1.20932 0.93241 0.99197 1.14750 1.17432 0.76327 0.94116 1.01787 1.91434 1.29318 1.97338 1.94020 1.20913 0.94447 0.96563 1.09995 1.20893 0.92528 0.97205 0.96562 1.16942 0.82448 0.91372 1.11087 1.42232 1.04524 1.23872 1.60661 1.15518 0.81417 0.82493 0.78538 1.90817 1.64713 1.37273 1.55897 1.47690 1.02355 1.27940 1.58587 1.22632 0.91095 0.91450 0.98535 1.22829 0.95252 0.98848 0.98874 1.22545 0.91953 1.01072 0.98375 1.21505 0.91597 0.90531 0.91165 0.91226 1.21977 0.95261 0.95534 0.94854 1.58645 1.62898 1.05676 1.09305 0.92628 0.84617 0.82191 0.82862 0.75452 0.91574 0.90692 0.89622 0.87502 0.87933 0.90115 0.97165 0.91771 0.84049 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.94 13.70 21.61 0.30 -51.64 16 2 C -0.03 -1.62 5.49 84.83 0.47 -1.16 16 3 Si 1.14 45.84 29.92 68.60 2.05 47.90 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.49 -26.95 9.49 67.92 0.64 -26.31 16 8 H 0.09 4.64 5.21 -2.91 -0.02 4.62 16 9 O -0.22 -12.06 8.71 -22.87 -0.20 -12.26 16 10 C 0.13 6.37 6.66 22.68 0.15 6.52 16 11 C -0.26 -11.66 9.14 22.41 0.20 -11.46 16 12 C 0.12 4.83 7.29 22.37 0.16 4.99 16 13 F -0.14 -5.23 17.26 44.97 0.78 -4.45 16 14 C -0.20 -7.01 10.02 22.33 0.22 -6.79 16 15 C -0.05 -1.95 8.70 22.37 0.19 -1.75 16 16 C 0.08 3.27 6.34 38.22 0.24 3.51 16 17 N -0.67 -25.58 5.16 -316.70 -1.63 -27.21 16 18 C 0.72 25.92 8.06 179.06 1.44 27.36 16 19 O -0.61 -24.40 12.88 -3.99 -0.05 -24.45 16 20 N -0.63 -17.69 3.06 -805.45 -2.47 -20.15 16 21 C 0.09 1.93 6.53 86.93 0.57 2.50 16 22 C -0.12 -1.81 7.10 32.06 0.23 -1.59 16 23 C -0.10 -1.63 6.30 31.78 0.20 -1.43 16 24 C 0.16 3.59 3.06 45.34 0.14 3.72 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 C 0.06 1.37 6.18 86.30 0.53 1.90 16 27 N -0.83 -14.86 9.41 -186.72 -1.76 -16.62 16 28 H 0.27 15.54 7.97 -92.70 -0.74 14.80 16 29 H 0.14 6.21 5.64 -2.91 -0.02 6.20 16 30 H 0.16 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.15 5.62 6.14 -2.91 -0.02 5.60 16 32 H 0.41 15.26 7.10 -92.71 -0.66 14.61 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.69 7.41 -2.39 -0.02 1.68 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.08 1.33 7.77 -2.39 -0.02 1.31 16 39 H 0.01 0.32 6.86 -2.39 -0.02 0.30 16 40 H 0.06 1.65 8.02 -2.39 -0.02 1.63 16 41 H 0.35 5.52 9.05 -89.69 -0.81 4.71 16 42 H 0.35 5.41 9.08 -89.69 -0.81 4.59 16 Total: -1.00 -67.06 350.79 1.27 -65.79 By element: Atomic # 1 Polarization: 44.23 SS G_CDS: -1.14 Total: 43.09 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.40 Total: 0.02 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -5.56 Total: -115.63 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.25 Total: -36.71 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.05 Total: 47.90 kcal Total: -67.06 1.27 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886936980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.231 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds