Wall clock time and date at job start Tue Mar 31 2020 14:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 115.55011 * 2 1 4 4 N 1.31793 * 119.08167 * 214.43731 * 3 2 1 5 5 C 1.32507 * 120.99502 * 179.97438 * 4 3 2 6 6 C 1.38200 * 119.18585 * 359.71782 * 5 4 3 7 7 C 1.39531 * 118.33802 * 0.54516 * 6 5 4 8 8 N 1.38914 * 120.53004 * 179.72870 * 7 6 5 9 9 C 1.34777 * 120.00127 * 174.73395 * 8 7 6 10 10 O 1.21583 * 119.99821 * 5.04531 * 9 8 7 11 11 C 1.47583 * 120.00235 * 185.04853 * 9 8 7 12 12 C 1.40040 * 119.89629 * 180.02562 * 11 9 8 13 13 C 1.36302 * 120.10361 * 180.24945 * 12 11 9 14 14 C 1.40904 * 119.89244 * 359.50252 * 13 12 11 15 15 C 1.41086 * 120.10198 * 180.22778 * 14 13 12 16 16 H 1.08004 * 120.00123 * 209.73172 * 15 14 13 17 17 C 1.40234 * 120.00101 * 29.72913 * 15 14 13 18 18 N 1.30635 * 120.00091 * 9.91701 * 17 15 14 19 19 Si 1.86801 * 119.99801 * 189.92069 * 17 15 14 20 20 H 1.48497 * 109.47355 * 90.00165 * 19 17 15 21 21 H 1.48508 * 109.46897 * 210.00014 * 19 17 15 22 22 H 1.48492 * 109.47273 * 329.99769 * 19 17 15 23 23 C 1.40907 * 119.79636 * 0.47381 * 14 13 12 24 24 C 1.36298 * 119.88942 * 359.77572 * 23 14 13 25 25 N 1.31735 * 119.08659 * 34.41717 * 3 2 1 26 26 C 1.53001 * 117.49674 * 145.66963 * 2 1 3 27 27 C 1.52996 * 117.49678 * 214.32805 * 2 1 3 28 28 H 1.08997 * 109.46959 * 85.58063 * 1 2 3 29 29 H 1.09003 * 109.47344 * 205.58461 * 1 2 3 30 30 H 1.09002 * 109.47028 * 325.58399 * 1 2 3 31 31 H 1.08005 * 120.40498 * 180.02562 * 5 4 3 32 32 H 1.08009 * 120.83425 * 180.27445 * 6 5 4 33 33 H 0.96998 * 119.99897 * 354.73881 * 8 7 6 34 34 H 1.08004 * 119.94850 * 359.97290 * 12 11 9 35 35 H 1.07993 * 120.05634 * 179.72139 * 13 12 11 36 36 H 0.96997 * 120.00204 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.05027 * 179.75493 * 23 14 13 38 38 H 1.08008 * 119.94047 * 179.97438 * 24 23 14 39 39 H 1.09008 * 117.49899 * 215.00316 * 26 2 1 40 40 H 1.08997 * 117.50332 * 0.02562 * 26 2 1 41 41 H 1.08996 * 117.50098 * 359.97438 * 27 2 1 42 42 H 1.08999 * 117.49757 * 144.97774 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 7 3.3133 1.5279 -0.6513 5 6 3.9172 2.7071 -0.6768 6 6 3.3412 3.7736 -0.0129 7 6 2.1442 3.5595 0.6714 8 7 1.5288 4.5981 1.3587 9 6 0.3213 4.4081 1.9265 10 8 -0.1881 3.3042 1.9168 11 6 -0.3825 5.5401 2.5600 12 6 -1.6368 5.3401 3.1498 13 6 -2.2929 6.3837 3.7316 14 6 -1.7024 7.6629 3.7481 15 6 -2.3755 8.7452 4.3533 16 1 -2.2190 9.7499 3.9895 17 6 -3.2476 8.5163 5.4273 18 7 -3.2922 7.3397 5.9932 19 14 -4.3457 9.8938 6.0487 20 1 -5.6375 9.8655 5.3169 21 1 -4.5955 9.7107 7.5011 22 1 -3.6770 11.2002 5.8223 23 6 -0.4400 7.8591 3.1538 24 6 0.2062 6.8106 2.5699 25 7 1.5994 2.3470 0.6507 26 6 2.2364 -1.1208 0.7654 27 6 2.2364 -1.1208 -0.7653 28 1 -0.3633 0.0792 -1.0246 29 1 -0.3634 -0.9269 0.4438 30 1 -0.3633 0.8478 0.5808 31 1 4.8455 2.8344 -1.2139 32 1 3.8082 4.7475 -0.0199 33 1 1.9680 5.4599 1.4299 34 1 -2.0870 4.3585 3.1398 35 1 -3.2621 6.2296 4.1822 36 1 -3.8958 7.1812 6.7359 37 1 0.0146 8.8387 3.1606 38 1 1.1737 6.9602 2.1137 39 1 3.1714 -0.8747 1.2690 40 1 1.6112 -1.8583 1.2686 41 1 1.6112 -1.8583 -1.2685 42 1 3.1711 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890250998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:50 Heat of formation + Delta-G solvation = 50.095302 kcal Electronic energy + Delta-G solvation = -25627.010122 eV Core-core repulsion = 21958.263744 eV Total energy + Delta-G solvation = -3668.746379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35334 -40.79291 -39.10067 -38.49799 -36.27122 -35.69563 -34.07422 -32.40303 -31.77322 -31.15624 -29.50129 -27.93276 -25.90925 -25.31657 -23.67601 -23.26892 -22.76583 -21.55494 -21.23715 -19.41528 -19.06596 -18.41095 -17.69711 -17.07004 -16.63506 -16.56133 -16.36478 -15.86583 -15.76994 -15.50989 -15.11738 -14.93652 -14.70192 -14.48584 -14.05537 -14.03525 -13.66405 -13.32766 -13.26935 -12.88142 -12.87059 -12.78709 -12.53704 -12.37710 -12.32330 -11.78942 -11.73730 -11.49055 -11.39978 -11.24719 -11.20785 -11.05537 -10.61745 -9.89793 -9.73923 -9.61168 -9.40073 -8.75863 -6.53524 -0.15678 0.14470 0.49954 1.11468 1.38296 1.42255 1.52987 1.79823 2.06219 2.15848 2.60635 2.78860 2.82722 3.03203 3.34436 3.64390 3.71888 3.77407 3.99475 4.06713 4.13685 4.23595 4.27629 4.36152 4.44042 4.52311 4.73892 4.83786 4.87986 4.94979 4.97229 4.99518 5.01292 5.15608 5.16250 5.21774 5.29101 5.41722 5.55685 5.61239 5.71140 5.78381 5.97937 6.02202 6.17002 6.49758 6.53914 6.74512 6.84993 7.15904 7.37730 8.18226 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.002482 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.812498 B =11276.978779 C =12145.208304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.101 4.101 3 C 0.362 3.638 4 N -0.553 5.553 5 C 0.169 3.831 6 C -0.261 4.261 7 C 0.383 3.617 8 N -0.646 5.646 9 C 0.561 3.439 10 O -0.533 6.533 11 C -0.287 4.287 12 C -0.049 4.049 13 C -0.195 4.195 14 C 0.102 3.898 15 C -0.470 4.470 16 H 0.094 0.906 17 C 0.029 3.971 18 N -0.812 5.812 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.251 1.251 23 C -0.238 4.238 24 C -0.039 4.039 25 N -0.546 5.546 26 C -0.149 4.149 27 C -0.126 4.126 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.216 0.784 32 H 0.188 0.812 33 H 0.433 0.567 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.294 0.706 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.435 -6.217 -10.176 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C 0.094 3.906 4 N -0.270 5.270 5 C 0.006 3.994 6 C -0.287 4.287 7 C 0.144 3.856 8 N -0.294 5.294 9 C 0.354 3.646 10 O -0.409 6.409 11 C -0.292 4.292 12 C -0.068 4.068 13 C -0.214 4.214 14 C 0.099 3.901 15 C -0.498 4.498 16 H 0.112 0.888 17 C -0.188 4.188 18 N -0.436 5.436 19 Si 0.811 3.189 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.174 1.174 23 C -0.257 4.257 24 C -0.058 4.058 25 N -0.267 5.267 26 C -0.187 4.187 27 C -0.164 4.164 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.233 0.767 32 H 0.205 0.795 33 H 0.274 0.726 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.464 -7.888 -9.918 17.088 hybrid contribution -0.345 1.786 0.847 2.007 sum 11.119 -6.102 -9.071 15.593 Atomic orbital electron populations 1.21196 0.90616 1.02636 1.01710 1.19886 0.94846 0.84741 1.10880 1.22227 0.87587 0.93602 0.87152 1.68152 1.10631 1.26687 1.21528 1.23740 0.98517 0.85741 0.91443 1.22664 0.96793 1.05051 1.04143 1.19202 0.89975 0.87205 0.89256 1.43480 1.19545 1.14084 1.52252 1.18768 0.80216 0.88517 0.77076 1.90756 1.66290 1.26483 1.57339 1.19055 0.99748 0.93601 1.16790 1.20542 0.93983 0.97366 0.94938 1.20983 1.01004 0.93947 1.05484 1.18207 0.90911 0.93038 0.87978 1.20166 1.21200 0.95600 1.12807 0.88835 1.27021 0.96767 0.99315 0.95699 1.69776 1.30900 1.24718 1.18217 0.85045 0.78044 0.78020 0.77766 1.18692 1.19376 1.17379 1.21022 0.96165 0.99276 1.09237 1.20736 0.98399 0.90968 0.95671 1.68081 1.36014 0.99954 1.22618 1.23178 1.01506 0.98217 0.95809 1.23150 1.02419 0.97174 0.93643 0.92276 0.90327 0.93507 0.76722 0.79515 0.72588 0.89114 0.87724 0.89537 0.86067 0.84241 0.89555 0.86551 0.86233 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.97 9.79 71.98 0.70 -2.27 16 2 C -0.10 -2.78 2.62 -52.93 -0.14 -2.92 16 3 C 0.36 11.49 7.12 138.77 0.99 12.48 16 4 N -0.55 -14.41 9.30 -188.07 -1.75 -16.16 16 5 C 0.17 3.25 11.29 84.58 0.96 4.21 16 6 C -0.26 -5.40 10.04 22.57 0.23 -5.17 16 7 C 0.38 12.05 7.45 133.03 0.99 13.04 16 8 N -0.65 -20.58 5.32 -310.84 -1.65 -22.24 16 9 C 0.56 23.68 7.72 86.71 0.67 24.35 16 10 O -0.53 -26.36 14.63 -3.98 -0.06 -26.42 16 11 C -0.29 -12.72 5.89 -19.94 -0.12 -12.84 16 12 C -0.05 -2.44 9.52 22.26 0.21 -2.23 16 13 C -0.19 -10.19 8.59 22.47 0.19 -10.00 16 14 C 0.10 5.13 5.55 -21.27 -0.12 5.02 16 15 C -0.47 -23.08 9.05 23.45 0.21 -22.87 16 16 H 0.09 4.26 7.87 -2.91 -0.02 4.24 16 17 C 0.03 1.37 5.26 85.36 0.45 1.82 16 18 N -0.81 -40.49 10.85 21.87 0.24 -40.25 16 19 Si 0.99 35.08 29.57 68.60 2.03 37.11 16 20 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 21 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 22 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 23 C -0.24 -10.29 9.73 22.47 0.22 -10.07 16 24 C -0.04 -1.51 9.47 22.25 0.21 -1.30 16 25 N -0.55 -20.27 7.04 -185.26 -1.30 -21.58 16 26 C -0.15 -3.26 9.88 30.62 0.30 -2.96 16 27 C -0.13 -2.49 9.73 30.62 0.30 -2.20 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.84 7.90 -2.39 -0.02 1.82 16 30 H 0.05 1.75 7.37 -2.39 -0.02 1.73 16 31 H 0.22 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.43 10.12 6.74 -92.71 -0.62 9.50 16 34 H 0.09 4.61 7.63 -2.91 -0.02 4.59 16 35 H 0.10 5.75 6.25 -2.91 -0.02 5.73 16 36 H 0.29 13.22 8.29 -92.71 -0.77 12.46 16 37 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 38 H 0.14 3.85 6.39 -2.91 -0.02 3.83 16 39 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.12 2.15 8.05 -2.39 -0.02 2.13 16 41 H 0.12 1.81 8.14 -2.39 -0.02 1.80 16 42 H 0.11 2.16 7.50 -2.39 -0.02 2.14 16 Total: -1.00 -70.16 359.32 4.20 -65.96 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: 0.44 Total: 37.49 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 6.26 Total: -13.91 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -4.47 Total: -100.23 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.06 Total: -26.42 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -70.16 4.20 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890250998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.052 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds