Wall clock time and date at job start Tue Mar 31 2020 14:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31679 * 119.71914 * 2 1 4 4 C 1.31938 * 121.88620 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.45379 * 179.97438 * 4 3 2 6 6 C 1.52998 * 117.50025 * 163.61804 * 5 4 3 7 7 C 1.52995 * 60.00028 * 252.51436 * 6 5 4 8 8 C 1.38379 * 121.09608 * 0.02562 * 4 3 2 9 9 C 1.38332 * 119.31071 * 359.71718 * 8 4 3 10 10 C 1.39605 * 119.72197 * 180.02562 * 2 1 3 11 11 C 1.47684 * 120.56871 * 359.97379 * 10 2 1 12 12 O 1.21566 * 119.99733 * 63.63745 * 11 10 2 13 13 N 1.34771 * 120.00119 * 243.63067 * 11 10 2 14 14 C 1.37003 * 120.00089 * 185.89598 * 13 11 10 15 15 H 1.07996 * 120.00400 * 167.86400 * 14 13 11 16 16 C 1.38983 * 119.99873 * 347.85766 * 14 13 11 17 17 N 1.31369 * 120.00044 * 92.03041 * 16 14 13 18 18 Si 1.86804 * 120.00068 * 272.03004 * 16 14 13 19 19 H 1.48505 * 109.46770 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47293 * 119.99900 * 18 16 14 21 21 H 1.48502 * 109.46914 * 239.99956 * 18 16 14 22 22 C 1.39352 * 120.00118 * 5.89489 * 13 11 10 23 23 C 1.39084 * 119.69936 * 185.01672 * 22 13 11 24 24 C 1.38372 * 119.09524 * 179.74494 * 23 22 13 25 25 C 1.38823 * 118.49547 * 0.50127 * 24 23 22 26 26 C 1.38155 * 119.31461 * 359.47910 * 25 24 23 27 27 N 1.31876 * 120.85141 * 0.27396 * 26 25 24 28 28 H 1.09004 * 109.47349 * 274.03227 * 1 2 3 29 29 H 1.09006 * 109.47360 * 34.02900 * 1 2 3 30 30 H 1.08998 * 109.47165 * 154.02751 * 1 2 3 31 31 H 1.09000 * 115.54665 * 309.32975 * 5 4 3 32 32 H 1.09003 * 117.50169 * 0.02562 * 6 5 4 33 33 H 1.09007 * 117.50006 * 145.01939 * 6 5 4 34 34 H 1.09003 * 117.50002 * 252.50690 * 7 6 5 35 35 H 1.08998 * 117.51930 * 107.48781 * 7 6 5 36 36 H 1.08005 * 120.33942 * 179.97438 * 8 4 3 37 37 H 1.07999 * 120.85727 * 180.25069 * 9 8 4 38 38 H 0.96996 * 120.00082 * 174.98925 * 17 16 14 39 39 H 1.08003 * 120.45175 * 0.02562 * 23 22 13 40 40 H 1.08002 * 120.75315 * 180.25987 * 24 23 22 41 41 H 1.08002 * 120.34688 * 179.75236 * 25 24 23 42 42 H 1.07998 * 119.57491 * 180.25424 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4782 1.1935 -0.0005 5 6 4.1691 2.5328 -0.0011 6 6 5.6503 2.5638 0.3811 7 6 4.5985 3.1066 1.3506 8 6 4.2372 0.0364 -0.0016 9 6 3.6001 -1.1914 0.0038 10 6 2.1992 -1.2124 -0.0005 11 6 1.4672 -2.4951 -0.0005 12 8 0.7596 -2.7911 -0.9436 13 7 1.5839 -3.3375 1.0449 14 6 1.0037 -4.5776 0.9936 15 1 1.2547 -5.3224 1.7342 16 6 0.0918 -4.8770 -0.0117 17 7 0.5053 -5.4255 -1.1315 18 14 -1.7217 -4.4995 0.2295 19 1 -1.9264 -3.8883 1.5674 20 1 -2.1745 -3.5536 -0.8218 21 1 -2.5059 -5.7570 0.1350 22 6 2.2948 -2.9474 2.1782 23 6 2.5007 -3.8574 3.2097 24 6 3.2129 -3.4583 4.3269 25 6 3.6875 -2.1547 4.3790 26 6 3.4461 -1.3041 3.3175 27 7 2.7684 -1.7139 2.2630 28 1 -0.3634 0.0723 1.0251 29 1 -0.3634 0.8517 -0.5751 30 1 -0.3633 -0.9239 -0.4500 31 1 3.8304 3.2361 -0.7618 32 1 6.1252 1.6155 0.6326 33 1 6.2865 3.2876 -0.1283 34 1 4.5427 4.1876 1.4791 35 1 4.3811 2.5157 2.2403 36 1 5.3159 0.0915 -0.0024 37 1 4.1679 -2.1101 0.0072 38 1 -0.1381 -5.7011 -1.8030 39 1 2.1139 -4.8632 3.1376 40 1 3.3921 -4.1442 5.1417 41 1 4.2434 -1.8104 5.2385 42 1 3.8169 -0.2903 3.3518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892477697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:21 Heat of formation + Delta-G solvation = 113.961699 kcal Electronic energy + Delta-G solvation = -27829.098905 eV Core-core repulsion = 24163.121982 eV Total energy + Delta-G solvation = -3665.976924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.57250 -39.42803 -38.21002 -36.77520 -34.67761 -33.14133 -32.39402 -31.81864 -31.22204 -29.18431 -27.41544 -25.89846 -24.34179 -23.12622 -22.62704 -22.18647 -21.59885 -20.68073 -19.68376 -17.82234 -17.45211 -16.54446 -15.94150 -15.71519 -15.10707 -14.98479 -14.81223 -14.51658 -13.98546 -13.93067 -13.83342 -13.55743 -13.44553 -12.93136 -12.62253 -12.45713 -12.37080 -12.20741 -11.90863 -11.62668 -11.56976 -11.46002 -11.30836 -11.07556 -10.72239 -10.52692 -10.40773 -10.19499 -9.97305 -9.63063 -9.38246 -9.15183 -8.90855 -8.58663 -7.94974 -7.77630 -7.63570 -7.21158 -3.76929 1.46490 1.74940 1.84108 2.09456 3.06929 3.34770 3.38139 3.66406 3.78121 3.84314 4.22865 4.32154 4.46697 4.53453 4.79375 4.87812 4.98464 5.01140 5.15239 5.25327 5.36109 5.40991 5.44497 5.54345 5.67747 5.77371 5.79028 5.94082 5.97680 6.04305 6.09329 6.10437 6.11042 6.19589 6.23826 6.45479 6.54937 6.64226 6.71482 6.79051 6.89792 7.02455 7.19907 7.33001 7.71955 8.21907 8.52665 8.55934 8.72788 9.10137 9.65782 9.80011 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.005550 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.465424 B = 5043.937706 C = 6292.501925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.159 3.841 3 N -0.483 5.483 4 C 0.153 3.847 5 C -0.098 4.098 6 C -0.176 4.176 7 C -0.163 4.163 8 C -0.181 4.181 9 C -0.008 4.008 10 C -0.091 4.091 11 C 0.497 3.503 12 O -0.514 6.514 13 N -0.329 5.329 14 C -0.532 4.532 15 H 0.120 0.880 16 C 0.222 3.778 17 N -0.674 5.674 18 Si 0.808 3.192 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.280 1.280 22 C 0.343 3.657 23 C -0.207 4.207 24 C -0.048 4.048 25 C -0.257 4.257 26 C 0.136 3.864 27 N -0.530 5.530 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.283 0.717 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 9.027 5.083 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.021 3.979 3 N -0.192 5.192 4 C 0.015 3.985 5 C -0.117 4.117 6 C -0.213 4.213 7 C -0.201 4.201 8 C -0.202 4.202 9 C -0.034 4.034 10 C -0.097 4.097 11 C 0.290 3.710 12 O -0.393 6.393 13 N -0.033 5.033 14 C -0.644 4.644 15 H 0.137 0.863 16 C -0.015 4.015 17 N -0.292 5.292 18 Si 0.627 3.373 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.206 1.206 22 C 0.113 3.887 23 C -0.231 4.231 24 C -0.074 4.074 25 C -0.280 4.280 26 C -0.024 4.024 27 N -0.248 5.248 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.668 10.056 3.484 12.559 hybrid contribution -0.211 -1.350 0.941 1.659 sum 6.457 8.705 4.425 11.707 Atomic orbital electron populations 1.20787 0.89379 1.03943 1.02629 1.20897 0.96121 0.86618 0.94236 1.67047 1.09064 1.28897 1.14197 1.20061 0.89151 0.92801 0.96528 1.20687 0.95729 0.95324 0.99952 1.23057 0.91301 1.03242 1.03733 1.22916 1.02842 1.00711 0.93618 1.21519 1.00358 0.92466 1.05811 1.21226 0.92957 0.97564 0.91672 1.20417 0.94377 0.94486 1.00411 1.18004 0.85294 0.84432 0.83258 1.90638 1.39616 1.74427 1.34645 1.41178 1.39429 1.13631 1.09014 1.18319 1.35628 0.89909 1.20561 0.86286 1.24819 0.99980 0.86855 0.89841 1.70713 1.39255 1.16002 1.03249 0.88019 0.88541 0.79818 0.80925 1.18299 1.19299 1.20592 1.18535 0.93193 0.89264 0.87690 1.21452 1.05296 1.01512 0.94840 1.21198 0.94170 0.95481 0.96507 1.21533 1.09252 0.95756 1.01425 1.22159 0.93380 0.98471 0.88377 1.67672 1.15499 1.15298 1.26325 0.91038 0.90956 0.89680 0.86687 0.88290 0.88484 0.88625 0.88689 0.85606 0.86145 0.90516 0.84559 0.86152 0.86587 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.87 36.01 0.36 -1.80 16 2 C 0.16 3.28 6.82 -82.15 -0.56 2.72 16 3 N -0.48 -9.14 10.17 -5.39 -0.05 -9.19 16 4 C 0.15 2.52 6.46 -82.50 -0.53 1.99 16 5 C -0.10 -1.25 6.21 -91.78 -0.57 -1.82 16 6 C -0.18 -1.74 9.79 -26.73 -0.26 -2.01 16 7 C -0.16 -1.75 10.23 -26.74 -0.27 -2.02 16 8 C -0.18 -2.93 9.34 -39.49 -0.37 -3.30 16 9 C -0.01 -0.15 7.42 -38.85 -0.29 -0.43 16 10 C -0.09 -1.98 3.53 -104.83 -0.37 -2.35 16 11 C 0.50 12.43 6.10 -12.40 -0.08 12.35 16 12 O -0.51 -14.07 12.04 5.31 0.06 -14.01 16 13 N -0.33 -8.16 2.84 -61.76 -0.18 -8.34 16 14 C -0.53 -13.78 9.05 -14.97 -0.14 -13.92 16 15 H 0.12 3.00 5.97 -52.49 -0.31 2.69 16 16 C 0.22 5.75 2.98 -17.47 -0.05 5.70 16 17 N -0.67 -17.54 13.27 55.50 0.74 -16.80 16 18 Si 0.81 19.25 28.78 -169.99 -4.89 14.36 16 19 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 C 0.34 7.55 7.09 -154.70 -1.10 6.45 16 23 C -0.21 -4.06 9.33 -39.22 -0.37 -4.42 16 24 C -0.05 -0.77 10.17 -39.32 -0.40 -1.17 16 25 C -0.26 -3.91 10.11 -39.40 -0.40 -4.31 16 26 C 0.14 2.29 11.18 -17.56 -0.20 2.09 16 27 N -0.53 -10.58 5.22 -12.35 -0.06 -10.64 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.86 5.96 -51.93 -0.31 1.55 16 31 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.10 0.97 6.38 -51.93 -0.33 0.64 16 33 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.13 1.66 6.23 -52.48 -0.33 1.34 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.14 2.68 5.99 -52.48 -0.31 2.37 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -29.28 349.26 -9.67 -38.95 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.96 Total: 6.66 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -5.59 Total: -6.25 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.44 Total: -44.97 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.06 Total: -14.01 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.89 Total: 14.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.28 -9.67 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.914 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds