Wall clock time and date at job start Tue Mar 31 2020 14:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47079 * 264.99525 * 3 2 1 5 5 H 1.48504 * 109.47061 * 24.99157 * 3 2 1 6 6 H 1.48501 * 109.47177 * 144.99515 * 3 2 1 7 7 C 1.40236 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 192.69313 * 7 2 1 9 9 C 1.41110 * 120.00107 * 12.69278 * 7 2 1 10 10 C 1.40894 * 120.09829 * 27.07950 * 9 7 2 11 11 C 1.36315 * 119.88486 * 179.97438 * 10 9 7 12 12 C 1.40015 * 120.10959 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89359 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00014 * 151.60349 * 13 12 11 15 15 N 1.34780 * 120.00225 * 331.59681 * 13 12 11 16 16 C 1.47424 * 125.64553 * 3.32740 * 15 13 12 17 17 C 1.54911 * 104.83254 * 204.09220 * 16 15 13 18 18 C 1.55163 * 101.57756 * 322.99077 * 17 16 15 19 19 C 1.47023 * 125.64908 * 183.02239 * 15 13 12 20 20 H 1.08996 * 109.88388 * 59.55724 * 19 15 13 21 21 C 1.50707 * 109.87975 * 298.39417 * 19 15 13 22 22 N 1.31800 * 119.12021 * 314.72778 * 21 19 15 23 23 C 1.32337 * 120.81243 * 179.75818 * 22 21 19 24 24 C 1.38596 * 119.10366 * 0.51155 * 23 22 21 25 25 C 1.38594 * 118.40325 * 359.74599 * 24 23 22 26 26 N 1.31786 * 119.12026 * 135.00273 * 21 19 15 27 27 C 1.40009 * 120.21127 * 359.97438 * 12 11 10 28 28 C 1.36324 * 120.10454 * 359.97438 * 27 12 11 29 29 H 0.96991 * 119.99977 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.05611 * 0.25612 * 10 9 7 31 31 H 1.08001 * 119.94300 * 179.97438 * 11 10 9 32 32 H 1.08997 * 110.36792 * 322.92638 * 16 15 13 33 33 H 1.08999 * 110.36686 * 85.14612 * 16 15 13 34 34 H 1.08991 * 111.00514 * 81.06049 * 17 16 15 35 35 H 1.09000 * 111.00458 * 204.92428 * 17 16 15 36 36 H 1.09005 * 110.71709 * 153.86615 * 18 17 16 37 37 H 1.08994 * 110.72250 * 276.95868 * 18 17 16 38 38 H 1.08003 * 120.44075 * 180.23370 * 23 22 21 39 39 H 1.08004 * 120.79191 * 179.77080 * 24 23 22 40 40 H 1.07994 * 120.44611 * 179.97438 * 25 24 23 41 41 H 1.07991 * 119.94904 * 179.97438 * 27 12 11 42 42 H 1.07997 * 120.05525 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5938 1.9853 -1.3948 5 1 1.3890 2.6809 0.5915 6 1 3.4811 1.4729 0.8031 7 6 2.0076 -1.2145 -0.0005 8 1 3.0678 -1.2260 0.2050 9 6 1.3280 -2.4215 -0.2696 10 6 0.1648 -2.4153 -1.0646 11 6 -0.4881 -3.5839 -1.3222 12 6 -0.0048 -4.7888 -0.7977 13 6 -0.7160 -6.0517 -1.0793 14 8 -0.1037 -7.1019 -1.1034 15 7 -2.0439 -6.0405 -1.3094 16 6 -2.8937 -4.8378 -1.3787 17 6 -4.3192 -5.3393 -1.0375 18 6 -4.3334 -6.7296 -1.7263 19 6 -2.8838 -7.2251 -1.5392 20 1 -2.8297 -7.8907 -0.6778 21 6 -2.4224 -7.9478 -2.7786 22 7 -2.1554 -7.2514 -3.8652 23 6 -1.7434 -7.8511 -4.9706 24 6 -1.6047 -9.2301 -4.9778 25 6 -1.9000 -9.9284 -3.8176 26 7 -2.3020 -9.2598 -2.7486 27 6 1.1507 -4.7999 -0.0072 28 6 1.8110 -3.6365 0.2550 29 1 -0.4850 0.8400 0.0004 30 1 -0.2064 -1.4870 -1.4730 31 1 -1.3800 -3.5802 -1.9312 32 1 -2.5663 -4.0993 -0.6470 33 1 -2.8693 -4.4133 -2.3823 34 1 -4.4519 -5.4358 0.0400 35 1 -5.0771 -4.6834 -1.4659 36 1 -5.0386 -7.3977 -1.2318 37 1 -4.5734 -6.6330 -2.7851 38 1 -1.5227 -7.2741 -5.8565 39 1 -1.2741 -9.7479 -5.8660 40 1 -1.8038 -11.0036 -3.7866 41 1 1.5194 -5.7316 0.3955 42 1 2.7020 -3.6459 0.8653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898966416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:50 Heat of formation + Delta-G solvation = 44.538741 kcal Electronic energy + Delta-G solvation = -26658.862880 eV Core-core repulsion = 22989.875551 eV Total energy + Delta-G solvation = -3668.987329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11952 -39.48346 -37.49285 -36.57643 -33.84911 -33.63028 -32.57446 -31.47630 -29.97691 -29.47174 -28.57436 -25.93232 -24.55809 -24.34297 -22.89772 -21.66618 -20.92723 -20.53439 -19.04544 -17.60118 -17.46715 -17.03150 -16.23027 -15.97781 -15.51466 -15.32959 -14.76954 -14.58713 -14.12219 -13.92793 -13.56271 -13.45129 -13.27226 -12.98139 -12.84690 -12.47354 -12.22762 -12.07823 -11.81153 -11.65668 -11.33493 -11.23846 -10.95803 -10.92693 -10.83998 -10.76651 -10.67164 -10.55899 -9.98592 -9.56911 -9.46307 -9.32163 -9.16507 -8.93072 -8.25297 -7.65518 -7.46795 -6.94097 -4.56780 0.90786 1.15261 2.30616 2.95270 2.98226 3.00515 3.05807 3.39546 3.70486 3.78891 3.86501 4.00903 4.28919 4.55732 4.58699 4.63223 4.78079 4.95227 5.02090 5.09548 5.33631 5.41875 5.55866 5.58114 5.71719 5.74299 5.79367 5.92781 6.05027 6.08957 6.20868 6.28275 6.31743 6.39376 6.72550 6.83497 6.88267 7.05078 7.08632 7.17833 7.49301 7.66997 7.86363 7.90760 8.10609 8.14505 8.22028 8.45736 8.68783 8.79828 9.02239 9.97239 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.003165 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.491354 B = 8845.717528 C = 9264.034717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.447 4.447 8 H 0.082 0.918 9 C 0.127 3.873 10 C -0.174 4.174 11 C -0.075 4.075 12 C -0.271 4.271 13 C 0.592 3.408 14 O -0.567 6.567 15 N -0.607 5.607 16 C 0.103 3.897 17 C -0.133 4.133 18 C -0.118 4.118 19 C 0.206 3.794 20 H 0.097 0.903 21 C 0.328 3.672 22 N -0.500 5.500 23 C 0.148 3.852 24 C -0.238 4.238 25 C 0.147 3.853 26 N -0.510 5.510 27 C -0.029 4.029 28 C -0.234 4.234 29 H 0.285 0.715 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.165 0.835 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.096 0.904 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -8.909 -7.179 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.124 3.876 10 C -0.193 4.193 11 C -0.094 4.094 12 C -0.275 4.275 13 C 0.388 3.612 14 O -0.448 6.448 15 N -0.341 5.341 16 C -0.020 4.020 17 C -0.171 4.171 18 C -0.156 4.156 19 C 0.099 3.901 20 H 0.115 0.885 21 C 0.059 3.941 22 N -0.213 5.213 23 C -0.019 4.019 24 C -0.260 4.260 25 C -0.020 4.020 26 N -0.224 5.224 27 C -0.048 4.048 28 C -0.254 4.254 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.182 0.818 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.114 0.886 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.748 -8.809 -6.324 14.581 hybrid contribution 0.793 0.201 -0.957 1.259 sum -8.955 -8.608 -7.282 14.398 Atomic orbital electron populations 1.69711 1.07721 1.29743 1.33255 1.26048 0.94884 1.01663 0.92055 0.86209 0.80365 0.79861 0.79704 1.18990 1.20086 1.18466 1.19806 0.96748 0.90681 1.40274 0.89966 1.17797 0.90923 0.92072 0.86786 1.21045 0.99175 0.96766 1.02298 1.20966 0.98102 0.92203 0.98082 1.18803 1.02247 0.91206 1.15239 1.18447 0.78890 0.89674 0.74175 1.90664 1.65962 1.34037 1.54113 1.48316 1.07222 1.05985 1.72583 1.22613 0.88723 0.88664 1.02005 1.22850 0.97253 0.95708 1.01265 1.22631 0.93371 0.97621 1.02014 1.20113 0.90455 0.88013 0.91516 0.88523 1.23411 0.90244 0.86688 0.93722 1.68188 1.12119 1.41198 0.99807 1.23234 0.90360 0.92229 0.96068 1.22850 1.04904 0.97037 1.01255 1.23162 0.90264 1.00763 0.87771 1.68176 1.14442 1.09964 1.29846 1.20286 0.92747 0.96814 0.94957 1.20720 1.03651 0.93048 1.07974 0.90414 0.85941 0.87762 0.88790 0.91173 0.90310 0.89689 0.89802 0.90503 0.81759 0.83809 0.81762 0.88592 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.71 10.82 55.56 0.60 -18.11 16 2 C 0.07 1.73 5.23 -17.31 -0.09 1.64 16 3 Si 0.91 17.55 29.58 -169.99 -5.03 12.53 16 4 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.45 -11.27 9.06 -37.74 -0.34 -11.61 16 8 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 9 C 0.13 3.28 5.57 -106.80 -0.59 2.69 16 10 C -0.17 -4.30 8.60 -39.27 -0.34 -4.64 16 11 C -0.07 -1.70 7.84 -39.61 -0.31 -2.01 16 12 C -0.27 -6.41 5.70 -104.73 -0.60 -7.00 16 13 C 0.59 13.40 7.43 -12.42 -0.09 13.31 16 14 O -0.57 -14.39 16.42 5.29 0.09 -14.31 16 15 N -0.61 -11.15 2.88 -165.49 -0.48 -11.63 16 16 C 0.10 1.57 5.02 -2.53 -0.01 1.55 16 17 C -0.13 -1.50 7.09 -24.58 -0.17 -1.67 16 18 C -0.12 -1.38 6.47 -24.89 -0.16 -1.54 16 19 C 0.21 3.28 3.27 -68.10 -0.22 3.06 16 20 H 0.10 1.60 8.13 -51.93 -0.42 1.17 16 21 C 0.33 5.48 5.62 -157.19 -0.88 4.60 16 22 N -0.50 -8.15 10.11 -10.72 -0.11 -8.25 16 23 C 0.15 1.90 11.30 -17.20 -0.19 1.70 16 24 C -0.24 -2.58 10.17 -39.32 -0.40 -2.98 16 25 C 0.15 1.80 11.31 -17.20 -0.19 1.60 16 26 N -0.51 -8.09 10.32 -10.72 -0.11 -8.20 16 27 C -0.03 -0.70 9.52 -39.61 -0.38 -1.08 16 28 C -0.23 -5.78 9.73 -39.27 -0.38 -6.17 16 29 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 30 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 31 H 0.10 2.09 4.64 -52.49 -0.24 1.85 16 32 H 0.09 1.57 6.25 -51.93 -0.32 1.24 16 33 H 0.07 1.06 7.22 -51.93 -0.38 0.68 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.90 7.83 -51.93 -0.41 0.49 16 38 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.10 2.25 7.88 -52.49 -0.41 1.83 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -31.96 351.34 -10.13 -42.09 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.02 Total: 9.12 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -5.37 Total: -8.53 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.10 Total: -46.19 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.96 -10.13 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898966416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.626 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds