Wall clock time and date at job start Tue Mar 31 2020 14:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47079 * 264.99525 * 3 2 1 5 5 H 1.48504 * 109.47061 * 24.99157 * 3 2 1 6 6 H 1.48501 * 109.47177 * 144.99515 * 3 2 1 7 7 C 1.40236 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 192.69313 * 7 2 1 9 9 C 1.41110 * 120.00107 * 12.69278 * 7 2 1 10 10 C 1.40894 * 120.09829 * 27.07950 * 9 7 2 11 11 C 1.36315 * 119.88486 * 179.97438 * 10 9 7 12 12 C 1.40015 * 120.10959 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89359 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00014 * 151.60349 * 13 12 11 15 15 N 1.34780 * 120.00225 * 331.59681 * 13 12 11 16 16 C 1.47424 * 125.64553 * 3.32740 * 15 13 12 17 17 C 1.54911 * 104.83254 * 204.09220 * 16 15 13 18 18 C 1.55163 * 101.57756 * 322.99077 * 17 16 15 19 19 C 1.47023 * 125.64908 * 183.02239 * 15 13 12 20 20 H 1.08996 * 109.88388 * 59.55724 * 19 15 13 21 21 C 1.50707 * 109.87975 * 298.39417 * 19 15 13 22 22 N 1.31800 * 119.12021 * 314.72778 * 21 19 15 23 23 C 1.32337 * 120.81243 * 179.75818 * 22 21 19 24 24 C 1.38596 * 119.10366 * 0.51155 * 23 22 21 25 25 C 1.38594 * 118.40325 * 359.74599 * 24 23 22 26 26 N 1.31786 * 119.12026 * 135.00273 * 21 19 15 27 27 C 1.40009 * 120.21127 * 359.97438 * 12 11 10 28 28 C 1.36324 * 120.10454 * 359.97438 * 27 12 11 29 29 H 0.96991 * 119.99977 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.05611 * 0.25612 * 10 9 7 31 31 H 1.08001 * 119.94300 * 179.97438 * 11 10 9 32 32 H 1.08997 * 110.36792 * 322.92638 * 16 15 13 33 33 H 1.08999 * 110.36686 * 85.14612 * 16 15 13 34 34 H 1.08991 * 111.00514 * 81.06049 * 17 16 15 35 35 H 1.09000 * 111.00458 * 204.92428 * 17 16 15 36 36 H 1.09005 * 110.71709 * 153.86615 * 18 17 16 37 37 H 1.08994 * 110.72250 * 276.95868 * 18 17 16 38 38 H 1.08003 * 120.44075 * 180.23370 * 23 22 21 39 39 H 1.08004 * 120.79191 * 179.77080 * 24 23 22 40 40 H 1.07994 * 120.44611 * 179.97438 * 25 24 23 41 41 H 1.07991 * 119.94904 * 179.97438 * 27 12 11 42 42 H 1.07997 * 120.05525 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5938 1.9853 -1.3948 5 1 1.3890 2.6809 0.5915 6 1 3.4811 1.4729 0.8031 7 6 2.0076 -1.2145 -0.0005 8 1 3.0678 -1.2260 0.2050 9 6 1.3280 -2.4215 -0.2696 10 6 0.1648 -2.4153 -1.0646 11 6 -0.4881 -3.5839 -1.3222 12 6 -0.0048 -4.7888 -0.7977 13 6 -0.7160 -6.0517 -1.0793 14 8 -0.1037 -7.1019 -1.1034 15 7 -2.0439 -6.0405 -1.3094 16 6 -2.8937 -4.8378 -1.3787 17 6 -4.3192 -5.3393 -1.0375 18 6 -4.3334 -6.7296 -1.7263 19 6 -2.8838 -7.2251 -1.5392 20 1 -2.8297 -7.8907 -0.6778 21 6 -2.4224 -7.9478 -2.7786 22 7 -2.1554 -7.2514 -3.8652 23 6 -1.7434 -7.8511 -4.9706 24 6 -1.6047 -9.2301 -4.9778 25 6 -1.9000 -9.9284 -3.8176 26 7 -2.3020 -9.2598 -2.7486 27 6 1.1507 -4.7999 -0.0072 28 6 1.8110 -3.6365 0.2550 29 1 -0.4850 0.8400 0.0004 30 1 -0.2064 -1.4870 -1.4730 31 1 -1.3800 -3.5802 -1.9312 32 1 -2.5663 -4.0993 -0.6470 33 1 -2.8693 -4.4133 -2.3823 34 1 -4.4519 -5.4358 0.0400 35 1 -5.0771 -4.6834 -1.4659 36 1 -5.0386 -7.3977 -1.2318 37 1 -4.5734 -6.6330 -2.7851 38 1 -1.5227 -7.2741 -5.8565 39 1 -1.2741 -9.7479 -5.8660 40 1 -1.8038 -11.0036 -3.7866 41 1 1.5194 -5.7316 0.3955 42 1 2.7020 -3.6459 0.8653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898966416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:49 Heat of formation + Delta-G solvation = 25.763290 kcal Electronic energy + Delta-G solvation = -26659.677045 eV Core-core repulsion = 22989.875551 eV Total energy + Delta-G solvation = -3669.801494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.21002 -40.96729 -39.16301 -38.21691 -35.67250 -34.67062 -33.72702 -32.82531 -31.62606 -31.36233 -29.78060 -27.72675 -25.66085 -25.46657 -24.27358 -23.17781 -22.63162 -21.88293 -20.55599 -19.33416 -18.68267 -18.35387 -17.59189 -17.38013 -17.09442 -16.49393 -16.03399 -15.81099 -15.74075 -15.47340 -14.99998 -14.62470 -14.52984 -14.40495 -14.31445 -14.05100 -13.79453 -13.58019 -13.48745 -13.02044 -12.84219 -12.71407 -12.63322 -12.42305 -12.04161 -11.87598 -11.80925 -11.75252 -11.66326 -11.25705 -11.12376 -10.82022 -10.43069 -10.21617 -9.74910 -9.55575 -9.36404 -8.72950 -6.48332 -0.08948 0.17962 0.47418 1.12426 1.40036 1.44253 1.53274 2.02163 2.02887 2.18638 2.70643 2.81495 2.91768 3.29754 3.55982 3.65903 3.69629 3.74701 3.99337 4.14360 4.17389 4.21148 4.27635 4.33151 4.39388 4.48254 4.58205 4.77468 4.80764 4.87641 4.93455 4.94407 5.02985 5.07137 5.15177 5.28323 5.29909 5.38492 5.46076 5.60144 5.80353 5.96854 6.00265 6.07469 6.22266 6.55137 6.56605 6.78990 6.88951 7.13300 7.30923 8.21423 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.003165 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.491354 B = 8845.717528 C = 9264.034717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.477 4.477 8 H 0.082 0.918 9 C 0.102 3.898 10 C -0.190 4.190 11 C -0.063 4.063 12 C -0.282 4.282 13 C 0.588 3.412 14 O -0.604 6.604 15 N -0.601 5.601 16 C 0.094 3.906 17 C -0.118 4.118 18 C -0.104 4.104 19 C 0.196 3.804 20 H 0.083 0.917 21 C 0.303 3.697 22 N -0.529 5.529 23 C 0.127 3.873 24 C -0.219 4.219 25 C 0.132 3.868 26 N -0.539 5.539 27 C -0.039 4.039 28 C -0.248 4.248 29 H 0.296 0.704 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.200 0.800 41 H 0.096 0.904 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.077 -8.636 -8.601 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.505 4.505 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.209 4.209 11 C -0.081 4.081 12 C -0.286 4.286 13 C 0.383 3.617 14 O -0.488 6.488 15 N -0.333 5.333 16 C -0.028 4.028 17 C -0.156 4.156 18 C -0.142 4.142 19 C 0.090 3.910 20 H 0.101 0.899 21 C 0.035 3.965 22 N -0.244 5.244 23 C -0.038 4.038 24 C -0.241 4.241 25 C -0.033 4.033 26 N -0.253 5.253 27 C -0.059 4.059 28 C -0.267 4.267 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.209 0.791 39 H 0.205 0.795 40 H 0.217 0.783 41 H 0.115 0.885 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.222 -8.547 -7.762 16.101 hybrid contribution 1.195 0.002 -0.583 1.329 sum -10.028 -8.545 -8.344 15.595 Atomic orbital electron populations 1.69732 1.08982 1.31390 1.32498 1.26878 0.95687 1.04588 0.90974 0.85107 0.78923 0.75276 0.79834 1.18435 1.18771 1.18370 1.20069 0.97043 0.91667 1.41711 0.89958 1.18132 0.91759 0.92769 0.87485 1.21055 0.99656 0.97154 1.03071 1.21147 0.98346 0.91230 0.97414 1.19072 1.02337 0.92279 1.14950 1.18263 0.80397 0.88605 0.74451 1.90623 1.67306 1.34843 1.56077 1.48250 1.06261 1.08260 1.70529 1.22783 0.90767 0.87520 1.01750 1.22845 0.94962 0.95718 1.02031 1.22629 0.90957 0.98034 1.02591 1.20367 0.92311 0.86947 0.91377 0.89942 1.23347 0.91830 0.87293 0.94078 1.68136 1.13355 1.42155 1.00725 1.23866 0.90102 0.93793 0.96057 1.23293 1.02361 0.96250 1.02159 1.23889 0.89451 1.02483 0.87464 1.68158 1.15601 1.09900 1.31669 1.20416 0.93295 0.96739 0.95414 1.20849 1.04208 0.93117 1.08556 0.89283 0.86501 0.85280 0.90450 0.90784 0.89516 0.86534 0.87161 0.90209 0.79062 0.79458 0.78291 0.88539 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.45 10.82 21.87 0.24 -38.21 16 2 C 0.04 1.73 5.23 85.36 0.45 2.18 16 3 Si 0.99 35.36 29.58 68.60 2.03 37.39 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 7 C -0.48 -24.59 9.06 23.46 0.21 -24.38 16 8 H 0.08 4.09 7.88 -2.91 -0.02 4.06 16 9 C 0.10 5.42 5.57 -21.28 -0.12 5.30 16 10 C -0.19 -9.67 8.60 22.47 0.19 -9.47 16 11 C -0.06 -2.92 7.84 22.25 0.17 -2.75 16 12 C -0.28 -13.79 5.70 -19.93 -0.11 -13.90 16 13 C 0.59 27.41 7.43 86.73 0.64 28.05 16 14 O -0.60 -31.82 16.42 -4.00 -0.07 -31.88 16 15 N -0.60 -22.29 2.88 -795.75 -2.30 -24.59 16 16 C 0.09 2.79 5.02 86.86 0.44 3.23 16 17 C -0.12 -2.38 7.09 31.99 0.23 -2.15 16 18 C -0.10 -2.22 6.47 31.79 0.21 -2.02 16 19 C 0.20 6.23 3.27 44.60 0.15 6.38 16 20 H 0.08 2.79 8.13 -2.39 -0.02 2.78 16 21 C 0.30 10.09 5.62 138.75 0.78 10.87 16 22 N -0.53 -16.95 10.11 -187.84 -1.90 -18.85 16 23 C 0.13 3.06 11.30 84.70 0.96 4.01 16 24 C -0.22 -4.15 10.17 22.44 0.23 -3.92 16 25 C 0.13 2.99 11.31 84.70 0.96 3.95 16 26 N -0.54 -16.83 10.32 -187.84 -1.94 -18.77 16 27 C -0.04 -1.99 9.52 22.25 0.21 -1.78 16 28 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 29 H 0.30 12.59 8.29 -92.71 -0.77 11.82 16 30 H 0.12 6.00 6.15 -2.91 -0.02 5.98 16 31 H 0.13 5.22 4.64 -2.91 -0.01 5.21 16 32 H 0.08 2.58 6.25 -2.39 -0.01 2.56 16 33 H 0.07 2.16 7.22 -2.39 -0.02 2.14 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 1.70 7.83 -2.39 -0.02 1.68 16 38 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 39 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.10 4.76 7.88 -2.92 -0.02 4.73 16 42 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -72.89 351.34 2.92 -69.97 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 1.05 Total: 33.89 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.81 Total: -8.94 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -5.90 Total: -100.43 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.07 Total: -31.88 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -72.89 2.92 -69.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898966416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.731 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds